version 1.0
Agrobacterium tumefaciens str. C58 chromosome linear, complete sequence - 1..2075577 1851 proteins Pos %G+C SD Location Strand Length PID Gene Synonym Code Product 1272 62.89 +1 1434893..1435924 - 343 159186110 - Atu4309 - AraC family transcriptional regulator 1273 61.40 0 1436024..1437277 + 417 15890672 soxB Atu4310 - sarcosine oxidase beta subunit 1274 61.99 0 1437344..1437664 + 106 15890671 soxD Atu4311 - sarcosine oxidase delta subunit 1275 62.45 0 1437661..1440651 + 996 15890670 soxA Atu4312 - sarcosine oxidase alpha subunit 1276 64.17 +1 1440658..1441218 + 186 15890669 soxG Atu4313 - sarcosine oxidase gamma subunit 1277 62.10 0 1441237..1442505 + 422 15890668 glyA Atu4314 - serine hydroxymethyltransferase 1278 57.40 0 1442632..1443516 + 294 159186111 purU Atu4315 - formyltetrahydrofolate deformylase 1279 61.46 0 1443591..1444820 - 409 15890666 - Atu4316 - ABC transporter, membrane spanning protein 1280 60.56 0 1444964..1445536 + 190 159186112 - Atu4317 - TetR family transcriptional regulator 1281 60.97 0 1445784..1446836 + 350 15890664 - Atu4318 - xylitol dehydrogenase 1282 59.55 0 1447208..1448092 + 294 159186113 - Atu4319 - AraC family transcriptional regulator 1283 59.87 0 1448190..1449101 + 303 15890662 rbsB Atu4320 - ABC transporter, substrate binding protein (ribose) 1284 59.55 0 1449173..1450675 + 500 159186114 rbsA Atu4321 - ABC transporter, nucleotide binding/ATPase protein (ribose) 1285 63.39 +1 1450665..1451642 + 325 159186115 rbsC Atu4322 - ABC transporter, membrane spanning protein (ribose) 1286 60.38 0 1451682..1452413 + 243 15890659 rdh Atu4323 - ribitol 2-dehydrogenase 1287 62.69 0 1452503..1454113 + 536 15890658 - Atu4324 - ribitol kinase 1288 62.67 0 1454163..1454888 + 241 159186116 cbr Atu4325 - short chain dehydrogenase 1289 58.30 0 1454974..1456467 - 497 159186117 - Atu4326 - proline/glycine betaine transporter 1290 56.74 0 1456654..1457076 + 140 159186118 - Atu4327 - hypothetical protein 1291 56.72 0 1457193..1457393 - 66 17938017 - Atu4328 - hypothetical protein 1292 62.02 0 1457455..1458357 + 300 15890654 bexD Atu4329 - polysaccharide export protein 1293 60.76 0 1458366..1459178 - 270 159186119 impN Atu4330 - serine/threonine protein kinase 1294 60.31 0 1459258..1460673 - 471 159186120 impM Atu4331 - serine/threonine phosphoprotein phosphatase 1295 60.89 0 1460756..1464235 - 1159 15890651 impL Atu4332 - IcmF family protein 1296 62.28 0 1464232..1465737 - 501 159186121 impK Atu4333 - OmpA-like porin 1297 62.19 0 1465734..1467074 - 446 15890649 impJ Atu4334 - hypothetical protein 1298 61.92 0 1467064..1468263 - 399 15890648 impI Atu4335 - putative forkhead-type phosphopeptide-binding protein 1299 62.79 +1 1468274..1469278 - 334 15890647 impH Atu4336 - hypothetical protein 1300 61.34 0 1469288..1471069 - 593 15890646 impG Atu4337 - hypothetical protein 1301 61.18 0 1471062..1471571 - 169 159186122 impF Atu4338 - hypothetical protein 1302 62.79 +1 1471564..1472388 - 274 15890644 impE Atu4339 - hypothetical protein 1303 62.37 0 1472385..1473779 - 464 159186123 impD Atu4340 - hypothetical protein 1304 60.32 0 1473834..1475315 - 493 15890642 impC Atu4341 - hypothetical protein 1305 55.88 -1 1475409..1475918 - 169 159186124 impB Atu4342 - hypothetical protein 1306 55.97 -1 1475984..1477039 - 351 15890640 impA Atu4343 - hypothetical protein 1307 60.84 0 1477260..1479938 + 892 159186125 clpB Atu4344 - ATP-dependent Clp protease, ATP-binding subunit 1308 54.30 -1 1479996..1480472 + 158 15890638 - Atu4345 - hypothetical protein 1309 58.97 0 1480579..1480968 + 129 159186126 - Atu4346 - hypothetical protein 1310 60.08 0 1480980..1481480 + 166 159186127 - Atu4347 - hypothetical protein 1311 60.51 0 1481495..1483945 + 816 15890635 vgrG Atu4348 - VgrG protein 1312 54.23 -1 1483948..1484904 + 318 159186128 - Atu4349 - hypothetical protein 1313 52.21 -2 1484901..1485737 + 278 15890633 - Atu4350 - hypothetical protein 1314 45.19 -2 1485765..1486439 + 224 15890632 - Atu4351 - hypothetical protein 1315 59.15 0 1486452..1486757 + 101 15890631 - Atu4352 - hypothetical protein 1316 57.91 0 1486896..1488734 - 612 159186129 - Atu4353 - hypothetical protein 1317 61.34 0 1489103..1490773 + 556 159186130 - Atu4354 - hypothetical protein 1318 59.99 0 1490777..1492333 - 518 15890628 - Atu4355 - hypothetical protein 1319 60.47 0 1492710..1493726 - 338 15890627 - Atu4356 - hypothetical protein 1320 60.36 0 1493959..1494624 + 221 15890626 - Atu4357 - hypothetical protein 1321 60.41 0 1494699..1495784 - 361 15890625 - Atu4358 - ABC transporter, nucleotide binding/ATPase protein 1322 57.85 0 1495781..1496608 - 275 15890624 - Atu4359 - ABC transporter, membrane spanning protein (sugar) 1323 57.81 0 1496605..1497507 - 300 15890623 thuF Atu4360 - ABC transporter, membrane spanning protein (sugar) 1324 58.72 0 1497621..1498853 - 410 15890622 - Atu4361 - ABC transporter, substrate binding protein (sugar) 1325 59.58 0 1498917..1499819 - 300 15890621 - Atu4362 - hypothetical protein 1326 59.52 0 1499832..1500866 - 344 159186131 - Atu4363 - hypothetical protein 1327 59.81 0 1501005..1502069 + 354 15890619 thuR Atu4364 - LacI family transcription regulator 1328 59.36 0 1502059..1502934 - 291 159186132 - Atu4365 - hypothetical protein 1329 59.17 0 1503110..1503883 - 257 159186133 sdhX Atu4366 - short chain dehydrogenase 1330 61.89 0 1504020..1504919 + 299 159186134 gstR Atu4367 - LysR family transcriptional regulator 1331 64.65 +1 1504990..1505385 - 131 159186135 - Atu4368 - hypothetical protein 1332 59.04 0 1505684..1506706 + 340 15890614 rbsB Atu4369 - ABC transporter, substrate binding protein (sugar) 1333 61.85 0 1506810..1508303 + 497 159186136 - Atu4370 - ABC transporter, nucleotide binding/ATPase protein (sugar) 1334 62.65 0 1508300..1509244 + 314 15890612 - Atu4371 - ABC transporter, membrane spanning protein (sugar) 1335 61.20 0 1509246..1510214 + 322 15890611 rbsC Atu4372 - ABC transporter, membrane spanning protein (ribose) 1336 61.97 0 1510218..1511240 + 340 15890610 cytR Atu4373 - LacI family transcriptional regulator 1337 59.81 0 1511274..1512323 + 349 15890609 - Atu4374 - hypothetical protein 1338 63.33 +1 1512335..1513504 + 389 159186137 - Atu4375 - hypothetical protein 1339 60.97 0 1513657..1514481 + 274 159186138 - Atu4376 - hypothetical protein 1340 58.96 0 1514633..1516318 + 561 15890606 - Atu4377 - oxidoreductase 1341 59.18 0 1516318..1516878 + 186 159186139 - Atu4378 - hypothetical protein 1342 59.60 0 1516948..1517343 + 131 159186140 cy2 Atu4379 - cytochrome c2 1343 62.96 +1 1517414..1518115 - 233 159186141 nnrR Atu4380 - Crp family transcriptional regulator 1344 62.31 0 1518265..1519182 - 305 159186142 nirV Atu4381 - nitrite reductase, NirV precursor 1345 61.59 0 1519291..1520433 - 380 159186143 nirK Atu4382 - nitrite reductase, copper-containing 1346 63.18 +1 1520670..1521902 + 410 159186144 - Atu4383 - hypothetical protein 1347 62.17 0 1521986..1522519 - 177 15890599 - Atu4384 - hypothetical protein 1348 60.22 0 1522598..1523047 - 149 15890598 - Atu4385 - hypothetical protein 1349 64.56 +1 1523047..1524945 - 632 15890597 norD Atu4386 - nitric oxide reductase NorD protein 1350 62.85 +1 1525017..1525829 - 270 159186145 norQ Atu4387 - nitric oxide reductase NorQ protein 1351 57.83 0 1525894..1527240 - 448 15890595 norB Atu4388 - nitric oxide reductase, cytochrome b subunit 1352 58.72 0 1527265..1527717 - 150 159186146 norC Atu4389 - nitric oxide reductase, cytochrome c-containing subunit 1353 63.00 +1 1527884..1528183 - 99 15890593 norF Atu8197 - NorF protein 1354 59.36 0 1528180..1528713 - 177 159186147 norE Atu4391 - nitric oxide reductase NorE protein 1355 58.93 0 1528839..1529006 + 55 15890591 - Atu8040 - hypothetical protein 1356 65.04 +1 1529019..1529696 + 225 15890590 nnrU Atu4392 - denitrification regulatory protein 1357 62.27 0 1529701..1530291 - 196 15890589 - Atu4393 - 3-octaprenyl-4-hydroxybenzoate carboxy-lyase 1358 62.94 +1 1530288..1531844 - 518 159186148 - Atu4394 - hypothetical protein 1359 58.69 0 1531871..1532221 - 116 159186149 - Atu4395 - hypothetical protein 1360 62.98 +1 1532371..1532886 + 171 15890586 - Atu4396 - hypothetical protein 1361 63.29 +1 1532877..1533854 + 325 15890585 - Atu4397 - protease 1362 63.05 +1 1533860..1534798 + 312 159186150 - Atu4398 - hypothetical protein 1363 61.64 0 1534795..1535172 + 125 15890583 - Atu4399 - hypothetical protein 1364 62.26 0 1535270..1537423 + 717 15890582 - Atu4400 - ferrienterobactin-like protein 1365 63.82 +1 1537442..1538425 + 327 15890581 - Atu4401 - hypothetical protein 1366 65.68 +1 1538431..1539240 + 269 15890580 - Atu4402 - ABC transporter, membrane spanning protein (anion) 1367 62.02 0 1539237..1539989 + 250 159186151 - Atu4403 - ABC transporter, nucleotide binding/ATPase protein (anion) 1368 63.22 +1 1539986..1541173 + 395 15890578 - Atu4404 - hypothetical protein 1369 58.60 0 1541384..1541569 + 61 15890577 napE Atu4405 - periplasmic nitrate reductase protein NapE 1370 63.07 +1 1541577..1542077 + 166 15890576 napF Atu4406 - periplasmic nitrate reductase, ferredoxin-like protein 1371 56.60 0 1542070..1542357 + 95 15890575 napD Atu4407 - periplasmic nitrate reductase, NapD protein 59.48 MEAN 3.31 STD DEV
Last Updated: Dec 04, 2008
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.
version
1.0