IslandPath Analysis: Agrobacterium tumefaciens str. C58



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 59.48   STD DEV: 3.31
Agrobacterium tumefaciens str. C58 chromosome linear, complete sequence - 1..2075577
1851 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1189	 60.49	0	1352037..1352942	+	301	15890755	purF	Atu4227	-	amidophosphoribosyltransferase
1190	 58.52	0	1352980..1353666	+	228	15890754	fwdC	Atu4228	-	formyl-methanofuran dehydrogenase
1191	 62.90	+1	1353683..1355011	+	442	15890753	gltB	Atu4229	-	glutamate synthase large subunit
1192	 59.56	0	1355097..1356404	+	435	15890752	glnA	Atu4230	-	glutamine synthetase III
1193	 58.19	0	1356493..1357377	+	294	159186072	purU	Atu4231	-	formyltetrahydrofolate deformylase
1194	 60.63	0	1357532..1358227	+	231	159186073	-	Atu4232	-	GntR family transcriptional regulator
1195	 60.39	0	1358411..1359271	+	286	159186074	-	Atu4233	-	ABC transporter, substrate binding protein (amino acid)
1196	 58.75	0	1359445..1360038	+	197	159186075	-	Atu4234	-	ABC transporter, membrane spanning protein (amino acid)
1197	 59.02	0	1360068..1360799	+	243	159186076	-	Atu4235	-	ABC transporter, nucleotide binding/ATPase protein (amino acid)
1198	 61.41	0	1360880..1362058	+	392	15890746	-	Atu4236	-	dehydrogenase
1199	 61.36	0	1362176..1362778	+	200	15890745	-	Atu4237	-	hypothetical protein
1200	 63.12	+1	1362790..1363635	+	281	159186077	-	Atu4238	-	hydrolase
1201	 60.49	0	1363632..1364570	+	312	15890743	-	Atu4239	-	flavoprotein oxidoreductase
1202	 59.27	0	1364567..1365607	+	346	15890742	-	Atu4240	-	alkanal monooxygenase alpha chain
1203	 61.28	0	1365612..1367078	+	488	159186078	dhaS	Atu4241	-	aldehyde dehydrogenase
1204	 55.87	-1	1367083..1367397	+	104	15890740	-	Atu4242	-	hypothetical protein
1205	 57.76	0	1367454..1368464	+	336	15890739	-	Atu4243	-	ABC transporter, substrate binding protein (polyamine)
1206	 60.50	0	1368524..1369399	+	291	159186079	-	Atu4244	-	ABC transporter, membrane spanning protein (polyamine)
1207	 60.17	0	1369401..1370201	+	266	15890737	-	Atu4245	-	ABC transporter, membrane spanning protein (polyamine)
1208	 59.46	0	1370198..1371280	+	360	15890736	-	Atu4246	-	ABC transporter, nucleotide binding/ATPase protein (polyamine)
1209	 61.03	0	1371293..1372747	+	484	15890735	attK	Atu4247	-	aldehyde dehydrogenase
1210	 59.57	0	1372755..1373036	-	93	159186080	-	Atu4248	-	hypothetical protein
1211	 60.25	0	1373286..1374329	-	347	15890733	-	Atu4249	-	ABC transporter, nucleotide binding/ATPase protein (sugars)
1212	 57.18	0	1374344..1375186	-	280	15890732	-	Atu4250	-	ABC transporter, membrane spanning protein (sugar)
1213	 59.33	0	1375176..1376102	-	308	159186081	-	Atu4251	-	ABC transporter, membrane spanning protein (sugar)
1214	 58.65	0	1376158..1377417	-	419	15890730	-	Atu4252	-	ABC transporter, substrate binding protein (sugar)
1215	 62.32	0	1377447..1379057	-	536	159186082	-	Atu4253	-	hypothetical protein
1216	 61.76	0	1379059..1380117	-	352	15890728	-	Atu4254	-	LacI family transcription regulator
1217	 53.14	-1	1380352..1380876	+	174	159186083	atsA	Atu4255	-	hypothetical protein
1218	 58.46	0	1381036..1382571	-	511	159186084	-	Atu4256	-	ABC transporter, nucleotide binding/ATPase protein (oligopeptide)
1219	 58.21	0	1382645..1383661	-	338	159186085	-	Atu4257	-	ABC transporter, membrane spanning protein (oligopeptide)
1220	 58.12	0	1383768..1384691	-	307	15890724	-	Atu4258	-	ABC transporter, membrane spanning protein (oligopeptide)
1221	 56.45	0	1384746..1386341	-	531	159186086	-	Atu4259	-	ABC transporter, substrate binding protein (oligopeptide)
1222	 58.56	0	1386627..1387403	-	258	159186087	-	Atu4260	-	ABC transporter, membrane spanning protein
1223	 59.00	0	1387390..1388211	-	273	15890721	-	Atu4261	-	ABC transporter, nucleotide binding/ATPase protein
1224	 58.39	0	1388221..1389150	-	309	159186088	-	Atu4262	-	ABC transporter, substrate binding protein
1225	 60.75	0	1389268..1390365	-	365	15890719	-	Atu4263	-	hypothetical protein
1226	 55.85	-1	1390459..1391355	+	298	15890718	-	Atu4264	-	LysR family transcriptional regulator
1227	 58.86	0	1391447..1392061	-	204	15890717	-	Atu4265	-	hypothetical protein
1228	 63.33	+1	1392096..1393442	-	448	15890716	-	Atu4266	-	GntR family transcriptional regulator
1229	 60.99	0	1393578..1393982	+	134	15890715	-	Atu4267	-	hypothetical protein
1230	 61.59	0	1394014..1394643	+	209	159186089	-	Atu4268	-	RhtB family transporter
1231	 62.53	0	1394700..1395545	+	281	159186090	phzC	Atu4269	-	phenazine biosynthesis protein
1232	 56.78	0	1395572..1396168	+	198	159186091	-	Atu4270	-	hypothetical protein
1233	 57.55	0	1396284..1397171	-	295	15890711	-	Atu4271	-	LysR family transcriptional regulator
1234	 53.01	-1	1397284..1397649	+	121	159186365	-	Atu8039	-	hypothetical protein
1235	 57.88	0	1397935..1398378	+	147	15890709	accB	Atu4272	-	acetyl-CoA carboxylase biotin carboxyl carrier protein
1236	 58.49	0	1398375..1399769	+	464	15890708	accC	Atu4273	-	acetyl-CoA carboxylase, biotin carboxylase
1237	 61.77	0	1399766..1400194	+	142	159186092	-	Atu4274	-	hypothetical protein
1238	 57.91	0	1400191..1400898	+	235	15890706	-	Atu4275	-	hypothetical protein
1239	 61.95	0	1400895..1401890	+	331	15890705	-	Atu4276	-	hypothetical protein
1240	 61.59	0	1401921..1402688	+	255	159186093	-	Atu4277	-	hypothetical protein
1241	 58.71	0	1402734..1403939	+	401	159186094	aatA	Atu4278	-	aspartate aminotransferase
1242	 58.50	0	1403998..1404903	-	301	159186095	nac	Atu4279	-	LysR family transcriptional regulator
1243	 58.21	0	1405144..1405923	+	259	15890701	-	Atu4280	-	short-chain dehydrogenase
1244	 57.20	0	1405920..1406627	+	235	15890700	-	Atu4281	-	ABC transporter, membrane spanning protein (amino acid)
1245	 59.16	0	1406624..1407382	+	252	15890699	-	Atu4282	-	ABC transporter, membrane spanning protein (amino acid)
1246	 59.22	0	1407379..1408143	+	254	15890698	-	Atu4283	-	ABC transporter, nucleotide binding/ATPase protein
1247	 58.78	0	1408174..1409010	+	278	15890697	-	Atu4284	-	ABC transporter, substrate binding protein (amino acid)
1248	 58.07	0	1409104..1409778	+	224	159186096	menG	Atu4285	-	S-adenosylmethionine:2-demethylmenaquinone methyltransferase
1249	 58.93	0	1409923..1410762	-	279	159186097	-	Atu4286	-	hypothetical protein
1250	 63.35	+1	1410846..1411538	-	230	15890694	-	Atu4287	-	NonF-related protein
1251	 61.33	0	1411727..1412626	+	299	159186098	-	Atu4288	-	LysR family transcriptional regulator
1252	 64.64	+1	1412652..1413590	-	312	15890692	adhC	Atu4289	-	alcohol dehydrogenase
1253	 56.72	0	1413630..1413830	+	66	17937979	-	Atu4290	-	hypothetical protein
1254	 60.18	0	1413855..1414763	-	302	159186099	-	Atu4291	-	LysR family transcriptional regulator
1255	 61.68	0	1414920..1416101	+	393	159186100	-	Atu4292	-	chloramphenicol resistance protein
1256	 65.50	+1	1416166..1417191	+	341	159186101	-	Atu4293	-	monooxygenase
1257	 59.47	0	1417206..1418039	+	277	15890688	yafB	Atu4294	-	oxidoreductase
1258	 62.54	0	1418147..1418995	-	282	159186102	aroE	Atu4295	-	shikimate 5-dehydrogenase
1259	 60.73	0	1418985..1420568	-	527	15890686	-	Atu4296	-	dehydrogenase
1260	 61.07	0	1420708..1421601	+	297	159186103	-	Atu4297	-	AraC family transcriptional regulator
1261	 59.34	0	1421591..1423609	-	672	15890684	-	Atu4298	-	hypothetical protein
1262	 58.89	0	1423945..1424484	+	179	159186104	-	Atu4299	-	hypothetical protein
1263	 60.53	0	1424686..1425321	+	211	159186105	nwsB	Atu4300	-	two component response regulator
1264	 60.21	0	1425633..1426391	+	252	159186106	-	Atu4301	-	hypothetical protein
1265	 56.76	0	1426469..1426882	+	137	15890680	-	Atu4302	-	hypothetical protein
1266	 59.49	0	1427019..1427450	+	143	15890679	-	Atu4303	-	hypothetical protein
1267	 56.74	0	1427475..1428965	+	496	15890678	-	Atu4304	-	hypothetical protein
1268	 61.67	0	1429208..1431850	+	880	15890677	-	Atu4305	-	two component sensor kinase
1269	 61.11	0	1431872..1432231	+	119	159186107	-	Atu4306	-	two component response regulator
1270	 63.05	+1	1432576..1433544	+	322	159186108	-	Atu4307	-	hypothetical protein
1271	 58.21	0	1433832..1434647	+	271	159186109	-	Atu4308	-	hypothetical protein
1272	 62.89	+1	1434893..1435924	-	343	159186110	-	Atu4309	-	AraC family transcriptional regulator
1273	 61.40	0	1436024..1437277	+	417	15890672	soxB	Atu4310	-	sarcosine oxidase beta subunit
1274	 61.99	0	1437344..1437664	+	106	15890671	soxD	Atu4311	-	sarcosine oxidase delta subunit
1275	 62.45	0	1437661..1440651	+	996	15890670	soxA	Atu4312	-	sarcosine oxidase alpha subunit
1276	 64.17	+1	1440658..1441218	+	186	15890669	soxG	Atu4313	-	sarcosine oxidase gamma subunit
1277	 62.10	0	1441237..1442505	+	422	15890668	glyA	Atu4314	-	serine hydroxymethyltransferase
1278	 57.40	0	1442632..1443516	+	294	159186111	purU	Atu4315	-	formyltetrahydrofolate deformylase
1279	 61.46	0	1443591..1444820	-	409	15890666	-	Atu4316	-	ABC transporter, membrane spanning protein
1280	 60.56	0	1444964..1445536	+	190	159186112	-	Atu4317	-	TetR family transcriptional regulator
1281	 60.97	0	1445784..1446836	+	350	15890664	-	Atu4318	-	xylitol dehydrogenase
1282	 59.55	0	1447208..1448092	+	294	159186113	-	Atu4319	-	AraC family transcriptional regulator
1283	 59.87	0	1448190..1449101	+	303	15890662	rbsB	Atu4320	-	ABC transporter, substrate binding protein (ribose)
1284	 59.55	0	1449173..1450675	+	500	159186114	rbsA	Atu4321	-	ABC transporter, nucleotide binding/ATPase protein (ribose)
1285	 63.39	+1	1450665..1451642	+	325	159186115	rbsC	Atu4322	-	ABC transporter, membrane spanning protein (ribose)
1286	 60.38	0	1451682..1452413	+	243	15890659	rdh	Atu4323	-	ribitol 2-dehydrogenase
1287	 62.69	0	1452503..1454113	+	536	15890658	-	Atu4324	-	ribitol kinase
1288	 62.67	0	1454163..1454888	+	241	159186116	cbr	Atu4325	-	short chain dehydrogenase
59.48	MEAN

3.31	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.