version 1.0
Agrobacterium tumefaciens str. C58 chromosome linear, complete sequence - 1..2075577 1851 proteins Pos %G+C SD Location Strand Length PID Gene Synonym Code Product 1084 58.13 0 1232024..1233628 + 534 15890861 dppA Atu4113 - ABC transporter, substrate binding protein (dipeptide) 1085 60.02 0 1233691..1234698 + 335 15890860 dppB Atu4114 - ABC transporter, membrane spanning protein (dipeptide) 1086 62.95 +1 1234695..1235609 + 304 15890859 dppC Atu4115 - ABC transporter, membrane spanning protein (dipeptide) 1087 60.24 0 1235613..1236452 + 279 15890858 dppD Atu4116 - ABC transporter, nucleotide binding/ATPase protein (dipeptide) 1088 61.94 0 1236449..1237294 + 281 15890857 dppF Atu4117 - ABC transporter, nucleotide binding/ATPase protein (dipeptide) 1089 60.00 0 1237357..1238031 - 224 15890856 - Atu4118 - GntR family transcriptional regulator 1090 58.98 0 1238259..1239377 + 372 15890855 - Atu4120 - mandelate racemase 1091 61.97 0 1239429..1240451 - 340 159186033 - Atu4121 - monooxygenase 1092 58.93 0 1240588..1241505 - 305 15890853 - Atu4122 - LysR family transcriptional regulator 1093 59.22 0 1241719..1242927 + 402 15890852 - Atu4123 - ABC transporter, substrate binding protein (branched chain amino acid) 1094 61.71 0 1242956..1243762 + 268 15890851 - Atu4124 - ABC transporter, nucleotide binding/ATPase protein (branched chain amino acid) 1095 59.69 0 1243764..1244465 + 233 15890850 - Atu4125 - ABC transporter, nucleotide binding/ATPase protein (branched chain amino acid) 1096 59.68 0 1244468..1245355 + 295 15890849 - Atu4126 - ABC transporter, membrane spanning protein (branched chain amino acid) 1097 59.42 0 1245357..1246364 + 335 15890848 - Atu4127 - ABC transporter, membrane spanning protein (branched chain amino acid) 1098 60.84 0 1246439..1248034 + 531 159186034 - Atu4128 - GMC type oxidoreductase 1099 63.39 +1 1248048..1248932 + 294 159186035 mmsB Atu4129 - 3-hydroxyisobutyrate dehydrogenase 1100 60.17 0 1248929..1250884 + 651 15890845 acsA Atu4130 - acetoacetyl-CoA synthetase 1101 62.21 0 1250889..1251674 + 261 15890844 - Atu4131 - hydroxybutyrate dehydrogenase 1102 60.92 0 1251793..1252836 + 347 159186036 - Atu4132 - AraC family transcriptional regulator 1103 52.19 -2 1252868..1253164 + 98 159186037 - Atu4133 - hypothetical protein 1104 62.01 0 1253290..1253697 + 135 159186038 - Atu4134 - hypothetical protein 1105 60.59 0 1253793..1256129 + 778 15890840 gcd Atu4135 - glucose dehydrogenase 1106 56.89 0 1256201..1256701 - 166 159186039 - Atu4136 - hypothetical protein 1107 61.73 0 1256875..1257360 + 161 15890838 - Atu4137 - hypothetical protein 1108 61.70 0 1257367..1258593 - 408 15890837 - Atu4138 - oxidoreductase 1109 57.18 0 1258613..1259023 - 136 15890836 - Atu4139 - hypothetical protein 1110 58.30 0 1259031..1259891 - 286 15890835 - Atu4140 - hypothetical protein 1111 55.56 -1 1259947..1260387 - 146 159186040 - Atu4141 - hypothetical protein 1112 57.40 0 1260446..1261006 - 186 15890833 pfpI Atu4142 - proteinase 1113 52.70 -2 1261025..1261246 - 73 15890832 - Atu4143 - hypothetical protein 1114 53.65 -1 1261290..1261481 + 63 17937839 - Atu4144 - hypothetical protein 1115 57.70 0 1261534..1262358 + 274 159186041 - Atu4145 - hypothetical protein 1116 60.49 0 1262358..1264235 + 625 159186042 - Atu4146 - hypothetical protein 1117 58.74 0 1264246..1265292 + 348 159186043 gshB Atu4147 - glutathione synthetase 1118 57.94 0 1265293..1266312 - 339 15890828 lspL Atu4148 - UDP-glucuronic acid epimerase 1119 60.21 0 1266399..1267730 - 443 15890827 ugdH Atu4149 - UDP-glucose 6-dehydrogenase 1120 58.78 0 1268112..1268999 + 295 159186044 - Atu4150 - hypothetical protein 1121 60.58 0 1269033..1269935 - 300 159186045 gcvA Atu4151 - LysR family transcriptional regulator 1122 62.22 0 1270148..1271677 + 509 159186046 - Atu4153 - aldehyde dehydrogenase 1123 60.17 0 1271907..1272860 + 317 159186047 - Atu4154 - ABC transporter, substrate binding protein (aliphatic sulfonate) 1124 59.39 0 1272881..1273663 + 260 15890822 - Atu4155 - ABC transporter, membrane spanning protein (aliphatic sulphonate) 1125 63.42 +1 1273672..1274502 + 276 15890821 - Atu4156 - ABC transporter, nucleotide binding/ATPase protein (aliphatic sulfonate) 1126 63.52 +1 1274540..1278226 - 1228 15890820 putA Atu4157 - bifunctional proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase 1127 56.05 -1 1278402..1278872 + 156 15890819 putR Atu4159 - AsnC family transcriptional regulator 1128 60.67 0 1278940..1279506 - 188 159186048 - Atu4160 - RNA polymerase sigma factor 1129 54.59 -1 1279506..1279712 - 68 15890817 - Atu4161 - hypothetical protein 1130 56.60 0 1279850..1280644 + 264 159186049 - Atu4162 - two-component response regulator 1131 57.68 0 1280740..1281729 + 329 15890815 - Atu4163 - two component sensor kinase 1132 58.91 0 1281990..1283729 - 579 15890814 - Atu4164 - two component sensor kinase 1133 60.59 0 1283944..1284519 + 191 15890813 - Atu4165 - hypothetical protein 1134 59.57 0 1284621..1285607 - 328 159186050 galE/exoB Atu4166 - UDP-glucose 4-epimerase 1135 62.33 0 1285777..1286214 - 145 15890811 - Atu4167 - hypothetical protein 1136 59.06 0 1286219..1286665 - 148 159186051 - Atu4168 - hypothetical protein 1137 55.56 -1 1286842..1287939 + 365 15890809 nspC Atu4169 - carboxynorspermidine decarboxylase 1138 55.77 -1 1288000..1289238 + 412 15890808 - Atu4170 - hypothetical protein 1139 62.55 0 1289460..1291307 - 615 15890807 deaD Atu4171 - cold-shock dead-box protein A 1140 55.29 -1 1291308..1291562 - 84 15890806 - Atu8038 - hypothetical protein 1141 60.41 0 1291699..1292976 + 425 159186052 lysC Atu4172 - aspartate kinase 1142 60.58 0 1293152..1295419 + 755 15890804 ptsI Atu4173 - phosphoenolpyruvate-protein phosphotransferase 1143 59.10 0 1295449..1296531 + 360 15890803 prfA Atu4174 - peptide chain release factor 1 1144 55.52 -1 1296528..1297397 + 289 15890802 hemK Atu4175 - protoporphyrinogen oxidase 1145 63.61 +1 1297793..1298578 + 261 159186053 - Atu4176 - hypothetical protein 1146 60.23 0 1298943..1301567 + 874 159186054 clpB Atu4177 - ATP-dependent Clp protease, ATP-binding subunit 1147 59.78 0 1301637..1303583 - 648 15890798 - Atu4178 - hypothetical protein 1148 47.46 -2 1303752..1304204 - 150 17937874 - Atu4179 - hypothetical protein 1149 49.23 -2 1306725..1307114 - 129 159186055 - Atu4183 - hypothetical protein 1150 50.67 -2 1309700..1309999 + 99 15890795 - Atu4185 - hypothetical protein 1151 59.75 0 1310831..1311727 - 298 159186056 dapA Atu4189 - dihydropicolinate synthase 1152 57.48 0 1311759..1312640 - 293 159186057 - Atu4190 - calcium-binding protein, regucalcin 1153 59.97 0 1312684..1313415 - 243 159186058 - Atu4191 - GntR family transcriptional regulator 1154 57.23 0 1313719..1315668 + 649 15890790 - Atu4192 - ABC transporter, substrate binding protein (oligopeptide) 1155 58.16 0 1315779..1316765 + 328 15890789 - Atu4193 - ABC transporter, membrane spanning protein (oligopeptide) 1156 59.82 0 1316775..1317899 + 374 15890788 - Atu4194 - ABC transporter, membrane spanning protein (oligopeptide) 1157 58.70 0 1317928..1319634 + 568 159186059 - Atu4195 - ABC transporter, nucleotide binding/ATPase protein (oligopeptide) 1158 58.00 0 1319679..1320866 + 395 15890786 - Atu4196 - hypothetical protein 1159 57.42 0 1320844..1321719 + 291 15890785 - Atu4197 - hypothetical protein 1160 54.88 -1 1321906..1322202 - 98 15890784 - Atu4198 - hypothetical protein 1161 60.03 0 1322273..1322845 - 190 159186060 - Atu4199 - TetR family transcriptional regulator 1162 56.65 0 1322941..1323429 - 162 159186061 - Atu4200 - hypothetical protein 1163 56.53 0 1323428..1324009 + 193 15890781 - Atu4201 - flavodoxin, WrbA-like protein 1164 57.83 0 1324449..1325150 - 233 15890780 - Atu4202 - methyltransferase 1165 59.77 0 1325168..1325878 - 236 15890779 - Atu4203 - hypothetical protein 1166 61.13 0 1325969..1326709 - 246 159186062 - Atu4204 - AraC family transcriptional regulator 1167 58.33 0 1327589..1328236 - 215 159186063 tetR Atu4205 - TetR family transcriptional regulator 1168 60.51 0 1328325..1329509 + 394 15890776 tetA Atu4206 - tetracycline resistance protein 1169 57.70 0 1329649..1330797 - 382 159186064 - Atu4207 - ROK family transcriptional regulator 1170 58.37 0 1330887..1332260 + 457 15890774 - Atu4208 - ABC transporter, substrate binding protein (sugar) 1171 60.09 0 1332328..1333239 + 303 159186065 - Atu4209 - ABC transporter, membrane spanning protein (sugar) 1172 58.17 0 1333239..1334297 + 352 159186066 - Atu4210 - ABC transporter, membrane spanning protein (sugars) 1173 59.30 0 1334303..1335415 + 370 15890771 - Atu4211 - ABC transporter, nucleotide binding/ATPase protein (sugar) 1174 57.70 0 1335428..1336174 + 248 15890770 ugpQ Atu4212 - glycerophosphodiester phosphodiesterase 1175 57.74 0 1336285..1336665 - 126 159186067 - Atu4213 - hypothetical protein 1176 52.38 -2 1336799..1337029 - 76 15890768 cspA Atu4214 - cold shock protein 1177 57.27 0 1337330..1337776 - 148 15890767 ftsZ Atu4215 - cell division protein 1178 61.12 0 1337832..1339130 - 432 159186068 fabF Atu4216 - 3-oxoacyl-(acyl carrier protein) synthase II 1179 60.20 0 1339277..1339864 - 195 159186069 - Atu4217 - TetR family transcriptional regulator 1180 62.25 0 1339962..1341071 + 369 159186070 - Atu4218 - multidrug efflux protein 1181 59.69 0 1341071..1344181 + 1036 15890763 - Atu4219 - cation efflux system protein 1182 56.96 0 1344211..1345086 + 291 15890762 - Atu4220 - short-chain dehydrogenase 1183 61.75 0 1345110..1345658 - 182 15890761 - Atu4221 - hypothetical protein 59.48 MEAN 3.31 STD DEV
Last Updated: Dec 04, 2008
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.
version
1.0