IslandPath Analysis: Agrobacterium tumefaciens str. C58



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 59.48   STD DEV: 3.31
Agrobacterium tumefaciens str. C58 chromosome linear, complete sequence - 1..2075577
1851 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1079	 61.56	0	1228027..1228653	-	208	15890866	rnd	Atu4108	-	ribonuclease D
1080	 57.25	0	1228724..1229413	+	229	15890865	-	Atu4109	-	hypothetical protein
1081	 60.40	0	1229427..1230176	+	249	15890864	sdh	Atu4110	-	serine dehydrogenase
1082	 52.27	-2	1230231..1230494	+	87	15890863	-	Atu4111	-	hypothetical protein
1083	 60.69	0	1230719..1231906	+	395	159186032	-	Atu4112	-	proline dipeptidase
1084	 58.13	0	1232024..1233628	+	534	15890861	dppA	Atu4113	-	ABC transporter, substrate binding protein (dipeptide)
1085	 60.02	0	1233691..1234698	+	335	15890860	dppB	Atu4114	-	ABC transporter, membrane spanning protein (dipeptide)
1086	 62.95	+1	1234695..1235609	+	304	15890859	dppC	Atu4115	-	ABC transporter, membrane spanning protein (dipeptide)
1087	 60.24	0	1235613..1236452	+	279	15890858	dppD	Atu4116	-	ABC transporter, nucleotide binding/ATPase protein (dipeptide)
1088	 61.94	0	1236449..1237294	+	281	15890857	dppF	Atu4117	-	ABC transporter, nucleotide binding/ATPase protein (dipeptide)
1089	 60.00	0	1237357..1238031	-	224	15890856	-	Atu4118	-	GntR family transcriptional regulator
1090	 58.98	0	1238259..1239377	+	372	15890855	-	Atu4120	-	mandelate racemase
1091	 61.97	0	1239429..1240451	-	340	159186033	-	Atu4121	-	monooxygenase
1092	 58.93	0	1240588..1241505	-	305	15890853	-	Atu4122	-	LysR family transcriptional regulator
1093	 59.22	0	1241719..1242927	+	402	15890852	-	Atu4123	-	ABC transporter, substrate binding protein (branched chain amino acid)
1094	 61.71	0	1242956..1243762	+	268	15890851	-	Atu4124	-	ABC transporter, nucleotide binding/ATPase protein (branched chain amino acid)
1095	 59.69	0	1243764..1244465	+	233	15890850	-	Atu4125	-	ABC transporter, nucleotide binding/ATPase protein (branched chain amino acid)
1096	 59.68	0	1244468..1245355	+	295	15890849	-	Atu4126	-	ABC transporter, membrane spanning protein (branched chain amino acid)
1097	 59.42	0	1245357..1246364	+	335	15890848	-	Atu4127	-	ABC transporter, membrane spanning protein (branched chain amino acid)
1098	 60.84	0	1246439..1248034	+	531	159186034	-	Atu4128	-	GMC type oxidoreductase
1099	 63.39	+1	1248048..1248932	+	294	159186035	mmsB	Atu4129	-	3-hydroxyisobutyrate dehydrogenase
1100	 60.17	0	1248929..1250884	+	651	15890845	acsA	Atu4130	-	acetoacetyl-CoA synthetase
1101	 62.21	0	1250889..1251674	+	261	15890844	-	Atu4131	-	hydroxybutyrate dehydrogenase
1102	 60.92	0	1251793..1252836	+	347	159186036	-	Atu4132	-	AraC family transcriptional regulator
1103	 52.19	-2	1252868..1253164	+	98	159186037	-	Atu4133	-	hypothetical protein
1104	 62.01	0	1253290..1253697	+	135	159186038	-	Atu4134	-	hypothetical protein
1105	 60.59	0	1253793..1256129	+	778	15890840	gcd	Atu4135	-	glucose dehydrogenase
1106	 56.89	0	1256201..1256701	-	166	159186039	-	Atu4136	-	hypothetical protein
1107	 61.73	0	1256875..1257360	+	161	15890838	-	Atu4137	-	hypothetical protein
1108	 61.70	0	1257367..1258593	-	408	15890837	-	Atu4138	-	oxidoreductase
1109	 57.18	0	1258613..1259023	-	136	15890836	-	Atu4139	-	hypothetical protein
1110	 58.30	0	1259031..1259891	-	286	15890835	-	Atu4140	-	hypothetical protein
1111	 55.56	-1	1259947..1260387	-	146	159186040	-	Atu4141	-	hypothetical protein
1112	 57.40	0	1260446..1261006	-	186	15890833	pfpI	Atu4142	-	proteinase
1113	 52.70	-2	1261025..1261246	-	73	15890832	-	Atu4143	-	hypothetical protein
1114	 53.65	-1	1261290..1261481	+	63	17937839	-	Atu4144	-	hypothetical protein
1115	 57.70	0	1261534..1262358	+	274	159186041	-	Atu4145	-	hypothetical protein
1116	 60.49	0	1262358..1264235	+	625	159186042	-	Atu4146	-	hypothetical protein
1117	 58.74	0	1264246..1265292	+	348	159186043	gshB	Atu4147	-	glutathione synthetase
1118	 57.94	0	1265293..1266312	-	339	15890828	lspL	Atu4148	-	UDP-glucuronic acid epimerase
1119	 60.21	0	1266399..1267730	-	443	15890827	ugdH	Atu4149	-	UDP-glucose 6-dehydrogenase
1120	 58.78	0	1268112..1268999	+	295	159186044	-	Atu4150	-	hypothetical protein
1121	 60.58	0	1269033..1269935	-	300	159186045	gcvA	Atu4151	-	LysR family transcriptional regulator
1122	 62.22	0	1270148..1271677	+	509	159186046	-	Atu4153	-	aldehyde dehydrogenase
1123	 60.17	0	1271907..1272860	+	317	159186047	-	Atu4154	-	ABC transporter, substrate binding protein (aliphatic sulfonate)
1124	 59.39	0	1272881..1273663	+	260	15890822	-	Atu4155	-	ABC transporter, membrane spanning protein (aliphatic sulphonate)
1125	 63.42	+1	1273672..1274502	+	276	15890821	-	Atu4156	-	ABC transporter, nucleotide binding/ATPase protein (aliphatic sulfonate)
1126	 63.52	+1	1274540..1278226	-	1228	15890820	putA	Atu4157	-	bifunctional proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase
1127	 56.05	-1	1278402..1278872	+	156	15890819	putR	Atu4159	-	AsnC family transcriptional regulator
1128	 60.67	0	1278940..1279506	-	188	159186048	-	Atu4160	-	RNA polymerase sigma factor
1129	 54.59	-1	1279506..1279712	-	68	15890817	-	Atu4161	-	hypothetical protein
1130	 56.60	0	1279850..1280644	+	264	159186049	-	Atu4162	-	two-component response regulator
1131	 57.68	0	1280740..1281729	+	329	15890815	-	Atu4163	-	two component sensor kinase
1132	 58.91	0	1281990..1283729	-	579	15890814	-	Atu4164	-	two component sensor kinase
1133	 60.59	0	1283944..1284519	+	191	15890813	-	Atu4165	-	hypothetical protein
1134	 59.57	0	1284621..1285607	-	328	159186050	galE/exoB	Atu4166	-	UDP-glucose 4-epimerase
1135	 62.33	0	1285777..1286214	-	145	15890811	-	Atu4167	-	hypothetical protein
1136	 59.06	0	1286219..1286665	-	148	159186051	-	Atu4168	-	hypothetical protein
1137	 55.56	-1	1286842..1287939	+	365	15890809	nspC	Atu4169	-	carboxynorspermidine decarboxylase
1138	 55.77	-1	1288000..1289238	+	412	15890808	-	Atu4170	-	hypothetical protein
1139	 62.55	0	1289460..1291307	-	615	15890807	deaD	Atu4171	-	cold-shock dead-box protein A
1140	 55.29	-1	1291308..1291562	-	84	15890806	-	Atu8038	-	hypothetical protein
1141	 60.41	0	1291699..1292976	+	425	159186052	lysC	Atu4172	-	aspartate kinase
1142	 60.58	0	1293152..1295419	+	755	15890804	ptsI	Atu4173	-	phosphoenolpyruvate-protein phosphotransferase
1143	 59.10	0	1295449..1296531	+	360	15890803	prfA	Atu4174	-	peptide chain release factor 1
1144	 55.52	-1	1296528..1297397	+	289	15890802	hemK	Atu4175	-	protoporphyrinogen oxidase
1145	 63.61	+1	1297793..1298578	+	261	159186053	-	Atu4176	-	hypothetical protein
1146	 60.23	0	1298943..1301567	+	874	159186054	clpB	Atu4177	-	ATP-dependent Clp protease, ATP-binding subunit
1147	 59.78	0	1301637..1303583	-	648	15890798	-	Atu4178	-	hypothetical protein
1148	 47.46	-2	1303752..1304204	-	150	17937874	-	Atu4179	-	hypothetical protein
1149	 49.23	-2	1306725..1307114	-	129	159186055	-	Atu4183	-	hypothetical protein
1150	 50.67	-2	1309700..1309999	+	99	15890795	-	Atu4185	-	hypothetical protein
1151	 59.75	0	1310831..1311727	-	298	159186056	dapA	Atu4189	-	dihydropicolinate synthase
1152	 57.48	0	1311759..1312640	-	293	159186057	-	Atu4190	-	calcium-binding protein, regucalcin
1153	 59.97	0	1312684..1313415	-	243	159186058	-	Atu4191	-	GntR family transcriptional regulator
1154	 57.23	0	1313719..1315668	+	649	15890790	-	Atu4192	-	ABC transporter, substrate binding protein (oligopeptide)
1155	 58.16	0	1315779..1316765	+	328	15890789	-	Atu4193	-	ABC transporter, membrane spanning protein (oligopeptide)
1156	 59.82	0	1316775..1317899	+	374	15890788	-	Atu4194	-	ABC transporter, membrane spanning protein (oligopeptide)
1157	 58.70	0	1317928..1319634	+	568	159186059	-	Atu4195	-	ABC transporter, nucleotide binding/ATPase protein (oligopeptide)
1158	 58.00	0	1319679..1320866	+	395	15890786	-	Atu4196	-	hypothetical protein
1159	 57.42	0	1320844..1321719	+	291	15890785	-	Atu4197	-	hypothetical protein
1160	 54.88	-1	1321906..1322202	-	98	15890784	-	Atu4198	-	hypothetical protein
1161	 60.03	0	1322273..1322845	-	190	159186060	-	Atu4199	-	TetR family transcriptional regulator
1162	 56.65	0	1322941..1323429	-	162	159186061	-	Atu4200	-	hypothetical protein
1163	 56.53	0	1323428..1324009	+	193	15890781	-	Atu4201	-	flavodoxin, WrbA-like protein
1164	 57.83	0	1324449..1325150	-	233	15890780	-	Atu4202	-	methyltransferase
1165	 59.77	0	1325168..1325878	-	236	15890779	-	Atu4203	-	hypothetical protein
1166	 61.13	0	1325969..1326709	-	246	159186062	-	Atu4204	-	AraC family transcriptional regulator
1167	 58.33	0	1327589..1328236	-	215	159186063	tetR	Atu4205	-	TetR family transcriptional regulator
1168	 60.51	0	1328325..1329509	+	394	15890776	tetA	Atu4206	-	tetracycline resistance protein
1169	 57.70	0	1329649..1330797	-	382	159186064	-	Atu4207	-	ROK family transcriptional regulator
1170	 58.37	0	1330887..1332260	+	457	15890774	-	Atu4208	-	ABC transporter, substrate binding protein (sugar)
1171	 60.09	0	1332328..1333239	+	303	159186065	-	Atu4209	-	ABC transporter, membrane spanning protein (sugar)
1172	 58.17	0	1333239..1334297	+	352	159186066	-	Atu4210	-	ABC transporter, membrane spanning protein (sugars)
1173	 59.30	0	1334303..1335415	+	370	15890771	-	Atu4211	-	ABC transporter, nucleotide binding/ATPase protein (sugar)
1174	 57.70	0	1335428..1336174	+	248	15890770	ugpQ	Atu4212	-	glycerophosphodiester phosphodiesterase
1175	 57.74	0	1336285..1336665	-	126	159186067	-	Atu4213	-	hypothetical protein
1176	 52.38	-2	1336799..1337029	-	76	15890768	cspA	Atu4214	-	cold shock protein
1177	 57.27	0	1337330..1337776	-	148	15890767	ftsZ	Atu4215	-	cell division protein
1178	 61.12	0	1337832..1339130	-	432	159186068	fabF	Atu4216	-	3-oxoacyl-(acyl carrier protein) synthase II
59.48	MEAN

3.31	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.