version 1.0
Agrobacterium tumefaciens str. C58 chromosome linear, complete sequence - 1..2075577 1851 proteins Pos %G+C SD Location Strand Length PID Gene Synonym Code Product 1013 64.57 +1 1155303..1155779 - 158 15890929 - Atu4042 - hypothetical protein 1014 62.91 +1 1155832..1157187 + 451 15890928 - Atu4043 - hypothetical protein 1015 60.73 0 1157179..1158240 - 353 159186004 - Atu4044 - ABC transporter, nucleotide binding/ATPase protein (glycine betaine) 1016 59.12 0 1158233..1159120 - 295 159186005 - Atu4045 - ABC transporter, membrane spanning protein (glycine betaine) 1017 59.66 0 1159339..1160337 - 332 159186006 - Atu4046 - ABC transporter, substrate binding protein (glycine betaine) 1018 60.65 0 1160701..1163676 + 991 15890924 - Atu4047 - two component sensor kinase/response regulator hybrid 1019 61.80 0 1163701..1164645 - 314 15890923 - Atu4048 - 2-hydroxyacid dehydrogenase 1020 60.11 0 1164770..1167163 - 797 15890922 exoP Atu4049 - exopolysaccharide polymerization/transport protein 1021 58.94 0 1167226..1168131 - 301 159186007 exoN Atu4050 - UTP-glucose-1-phosphate uridylyltransferase 1022 59.73 0 1168216..1169196 - 326 15890920 exoO Atu4051 - succinoglycan biosynthesis glycosyltransferase 1023 62.33 0 1169196..1170140 - 314 15890919 exoM Atu4052 - UDP-hexose transferase 1024 58.96 0 1170137..1171135 - 332 159186008 exoA Atu4053 - succinoglycan biosynthesis protein 1025 61.84 0 1171153..1172334 - 393 15890917 exoL Atu4054 - succinoglycan biosynthesis protein 1026 56.82 0 1172360..1173151 - 263 159186009 exoK Atu4055 - endo-1,3-1,4-beta-glycanase 1027 57.44 0 1173156..1174304 - 382 159186010 exoH Atu4056 - succinoglycan biosynthesis protein 1028 60.38 0 1174676..1176154 - 492 159186011 exoT Atu4057 - succinoglycan biosynthesis transport protein 1029 56.73 0 1176272..1177237 + 321 159186012 exoW Atu4058 - succinoglycan biosynthesis protein 1030 62.02 0 1177289..1178257 + 322 15890912 exoV Atu4059 - succinoglycan biosynthesis protein 1031 60.10 0 1178491..1179480 - 329 159186013 exoU Atu4060 - succinoglycan biosynthesis glycosyltransferase 1032 51.61 -2 1179591..1179869 - 92 159186014 exoX Atu4061 - exopolysaccharide production repressor protein 1033 60.30 0 1180214..1180480 + 88 159186015 - Atu4062 - hypothetical protein 1034 60.65 0 1180552..1181448 - 298 159186016 - Atu4063 - O-linked GlcNAc transferase 1035 59.65 0 1181584..1181811 - 75 15890907 rpsU Atu4064 - 30S ribosomal protein S21 1036 51.14 -2 1181813..1182031 - 72 17937761 - Atu4065 - hypothetical protein 1037 59.73 0 1182128..1183381 + 417 159186017 soxB Atu4066 - sarcosine oxidase beta subunit 1038 57.58 0 1183396..1183791 + 131 159186018 - Atu4067 - hypothetical protein 1039 57.46 0 1183803..1184117 + 104 15890904 soxD Atu4068 - sarcosine oxidase delta subunit 1040 61.90 0 1184114..1187074 + 986 15890903 soxA Atu4069 - sarcosine oxidase alpha subunit 1041 64.68 +1 1187067..1187621 + 184 15890902 soxG Atu4070 - sarcosine oxidase gamma subunit 1042 64.46 +1 1187618..1188658 - 346 15890901 - Atu4071 - hypothetical protein 1043 58.69 0 1188681..1189169 - 162 15890900 nodN Atu4072 - nodulation protein N 1044 60.94 0 1189224..1191179 - 651 15890899 glgX Atu4073 - glycogen debranching enzyme 1045 59.79 0 1191284..1192912 - 542 159186019 exoC Atu4074 - phosphoglucomutase 1046 60.50 0 1192917..1194359 - 480 15890897 glgA Atu4075 - glycogen synthase 1047 57.96 0 1194365..1195627 - 420 15890896 glgC Atu4076 - glucose-1-phosphate adenylyltransferase 1048 59.10 0 1195649..1197856 - 735 15890895 glgB Atu4077 - glycogen branching enzyme 1049 59.44 0 1197856..1200318 - 820 15890894 glgP Atu4078 - glycogen phosphorylase 1050 50.00 -2 1200453..1200728 + 91 159186020 - Atu4079 - hypothetical protein 1051 62.00 0 1200803..1201573 - 256 15890893 - Atu4080 - glutamine amidotransferase 1052 62.04 0 1201574..1202287 - 237 159186021 - Atu4081 - aspartate racemase 1053 56.28 0 1202455..1202916 + 153 159186022 - Atu4082 - AsnC family transcriptional regulator 1054 60.37 0 1202935..1203918 - 327 15890890 - Atu4083 - putative aldose epimerase 1055 64.09 +1 1204057..1204950 - 297 159186023 garR Atu4085 - 2-hydroxy-3-oxopropionate reductase 1056 63.10 +1 1205038..1205793 - 251 159186024 idnO Atu4086 - gluconate 5-dehydrogenase 1057 63.66 +1 1206009..1207040 + 343 15890887 - Atu4087 - zinc-binding dehydrogenase 1058 58.55 0 1207368..1207946 + 192 159186025 - Atu4088 - transcriptional regulator 1059 63.20 +1 1208208..1209734 + 508 159186026 cydD Atu4089 - ABC transporter, nucleotide binding/ATPase protein 1060 65.19 +1 1209731..1211422 + 563 15890884 cydC Atu4090 - ABC transporter, nucleotide binding/ATPase protein 1061 59.70 0 1211490..1213067 + 525 159186027 cydA Atu4091 - cytochrome d oxidase 1062 59.76 0 1213074..1214231 + 385 15890882 cydB Atu4092 - cytochrome d oxidase subunit II 1063 56.10 -1 1214271..1214393 + 40 159186364 - Atu8036 - protein YBGT-related protein 1064 54.50 -1 1214469..1214657 - 62 17937789 - Atu4093 - hypothetical protein 1065 61.19 0 1214680..1215099 - 139 15890880 - Atu4094 - hypothetical protein 1066 55.16 -1 1215112..1215363 - 83 15890879 - Atu4095 - hypothetical protein 1067 63.17 +1 1215509..1216366 - 285 159186028 nadC Atu4096 - nicotinate-nucleotide pyrophosphorylase 1068 66.79 +2 1216368..1217936 - 522 15890877 nadB Atu4097 - L-aspartate oxidase 1069 58.19 0 1217933..1218970 - 345 15890876 nadA Atu4098 - quinolinate synthetase 1070 62.02 0 1218974..1219876 - 300 159186029 - Atu4099 - hypothetical protein 1071 55.42 -1 1219969..1220457 + 162 15890874 - Atu4100 - hypothetical protein 1072 62.90 +1 1220530..1221033 + 167 15890873 - Atu4101 - hypothetical protein 1073 57.18 0 1221338..1221727 - 129 15890872 - Atu8037 - hypothetical protein 1074 61.77 0 1221954..1222586 + 210 15890871 cmk Atu4103 - cytidylate kinase 1075 58.38 0 1222756..1224456 + 566 159186030 rpsA Atu4104 - 30S ribosomal protein S1 1076 63.94 +1 1224556..1226097 - 513 15890869 - Atu4105 - hypothetical protein 1077 61.17 0 1226357..1226665 - 102 159186031 - Atu4106 - hypothetical protein 1078 58.86 0 1226713..1227942 - 409 15890867 - Atu8196 - hypothetical protein 1079 61.56 0 1228027..1228653 - 208 15890866 rnd Atu4108 - ribonuclease D 1080 57.25 0 1228724..1229413 + 229 15890865 - Atu4109 - hypothetical protein 1081 60.40 0 1229427..1230176 + 249 15890864 sdh Atu4110 - serine dehydrogenase 1082 52.27 -2 1230231..1230494 + 87 15890863 - Atu4111 - hypothetical protein 1083 60.69 0 1230719..1231906 + 395 159186032 - Atu4112 - proline dipeptidase 1084 58.13 0 1232024..1233628 + 534 15890861 dppA Atu4113 - ABC transporter, substrate binding protein (dipeptide) 1085 60.02 0 1233691..1234698 + 335 15890860 dppB Atu4114 - ABC transporter, membrane spanning protein (dipeptide) 1086 62.95 +1 1234695..1235609 + 304 15890859 dppC Atu4115 - ABC transporter, membrane spanning protein (dipeptide) 1087 60.24 0 1235613..1236452 + 279 15890858 dppD Atu4116 - ABC transporter, nucleotide binding/ATPase protein (dipeptide) 1088 61.94 0 1236449..1237294 + 281 15890857 dppF Atu4117 - ABC transporter, nucleotide binding/ATPase protein (dipeptide) 1089 60.00 0 1237357..1238031 - 224 15890856 - Atu4118 - GntR family transcriptional regulator 1090 58.98 0 1238259..1239377 + 372 15890855 - Atu4120 - mandelate racemase 1091 61.97 0 1239429..1240451 - 340 159186033 - Atu4121 - monooxygenase 1092 58.93 0 1240588..1241505 - 305 15890853 - Atu4122 - LysR family transcriptional regulator 1093 59.22 0 1241719..1242927 + 402 15890852 - Atu4123 - ABC transporter, substrate binding protein (branched chain amino acid) 1094 61.71 0 1242956..1243762 + 268 15890851 - Atu4124 - ABC transporter, nucleotide binding/ATPase protein (branched chain amino acid) 1095 59.69 0 1243764..1244465 + 233 15890850 - Atu4125 - ABC transporter, nucleotide binding/ATPase protein (branched chain amino acid) 1096 59.68 0 1244468..1245355 + 295 15890849 - Atu4126 - ABC transporter, membrane spanning protein (branched chain amino acid) 1097 59.42 0 1245357..1246364 + 335 15890848 - Atu4127 - ABC transporter, membrane spanning protein (branched chain amino acid) 1098 60.84 0 1246439..1248034 + 531 159186034 - Atu4128 - GMC type oxidoreductase 1099 63.39 +1 1248048..1248932 + 294 159186035 mmsB Atu4129 - 3-hydroxyisobutyrate dehydrogenase 1100 60.17 0 1248929..1250884 + 651 15890845 acsA Atu4130 - acetoacetyl-CoA synthetase 1101 62.21 0 1250889..1251674 + 261 15890844 - Atu4131 - hydroxybutyrate dehydrogenase 1102 60.92 0 1251793..1252836 + 347 159186036 - Atu4132 - AraC family transcriptional regulator 1103 52.19 -2 1252868..1253164 + 98 159186037 - Atu4133 - hypothetical protein 1104 62.01 0 1253290..1253697 + 135 159186038 - Atu4134 - hypothetical protein 1105 60.59 0 1253793..1256129 + 778 15890840 gcd Atu4135 - glucose dehydrogenase 1106 56.89 0 1256201..1256701 - 166 159186039 - Atu4136 - hypothetical protein 1107 61.73 0 1256875..1257360 + 161 15890838 - Atu4137 - hypothetical protein 1108 61.70 0 1257367..1258593 - 408 15890837 - Atu4138 - oxidoreductase 1109 57.18 0 1258613..1259023 - 136 15890836 - Atu4139 - hypothetical protein 1110 58.30 0 1259031..1259891 - 286 15890835 - Atu4140 - hypothetical protein 1111 55.56 -1 1259947..1260387 - 146 159186040 - Atu4141 - hypothetical protein 1112 57.40 0 1260446..1261006 - 186 15890833 pfpI Atu4142 - proteinase 59.48 MEAN 3.31 STD DEV
Last Updated: Dec 04, 2008
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.
version
1.0