IslandPathversion 1.0

IslandPath Analysis: Aeromonas hydrophila subsp. hydrophila ATCC 7966



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 62.23 STD DEV: 5.38
Aeromonas hydrophila subsp. hydrophila ATCC 7966, complete genome - 1..4744448
4122 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
828	 65.02	0	922392..923792	-	466	117618868	-	AHA_0858	-	Na(+) driven multidrug efflux pump
829	 54.08	-1	923975..924268	+	97	117621373	groS	AHA_0859	-	chaperonin GroS
830	 59.88	0	924310..925944	+	544	117619709	groL	AHA_0860	-	chaperonin GroEL
831	 56.36	-1	926082..926537	+	151	117617693	-	AHA_0861	-	oxidoreductase molybdopterin binding subunit
832	 56.26	-1	926561..928492	+	643	117618065	-	AHA_0862	-	PAS/GGDEF domain-containing protein
833	 62.10	0	928813..929469	-	218	117618521	-	AHA_0863	-	ribosomal large subunit pseudouridine synthase A
834	 61.33	0	929579..932446	-	955	117617895	-	AHA_0864	-	ATP-dependent helicase HepA
835	 57.17	0	938489..938941	+	150	117619970	-	AHA_0869	-	putative pullulanase
836	 61.22	0	939149..941296	+	715	117620070	-	AHA_0870	-	ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
837	 59.32	0	941307..941987	+	226	117620594	-	AHA_0871	-	ribonucleotide reductase system
838	 59.96	0	942196..943566	+	456	117620966	-	AHA_0872	-	PhoH family protein
839	 63.96	0	943634..943744	-	36	117621510	-	AHA_0873	-	hypothetical protein
840	 65.54	0	943804..944511	-	235	117619772	thiQ	AHA_0874	-	thiamine ABC transporter, ATP-binding protein
841	 67.59	0	944577..946199	-	540	117618673	thiP	AHA_0875	-	thiamine/thiamine pyrophosphate ABC transporter, permease protein
842	 62.79	0	946196..947176	-	326	117619164	thiB	AHA_0876	-	thiamin/thiamin pyrophosphate ABC transporter, periplasmic thiamin/thiamin pyrophospate-binding protein
843	 61.67	0	947341..947700	+	119	117617505	-	AHA_0877	-	type IV pilus assembly protein PilZ
844	 65.26	0	947803..948729	-	308	117617981	-	AHA_0878	-	hypothetical protein
845	 62.17	0	948846..949445	-	199	117621006	leuD	AHA_0879	-	isopropylmalate isomerase small subunit
846	 64.95	0	949458..950855	-	465	117621490	leuC	AHA_0880	-	3-isopropylmalate dehydratase, large subunit
847	 65.01	0	950888..951973	-	361	117617964	leuB	AHA_0881	-	3-isopropylmalate dehydrogenase
848	 61.65	0	951976..953550	-	524	117619203	leuA-1	AHA_0882	-	2-isopropylmalate synthase
849	 58.65	0	953958..954581	+	207	117618709	-	AHA_0883	-	transcriptional regulator, TetR family protein
850	 68.26	+1	954707..955207	+	166	117620994	-	AHA_0884	-	PAP2 family protein
851	 65.14	0	955207..956316	+	369	117620279	-	AHA_0885	-	glycosyl transferase
852	 56.86	0	956353..956505	+	50	117617560	-	AHA_0886	-	hypothetical protein
853	 61.55	0	956895..958613	+	572	117621555	ilvB-1	AHA_0887	-	acetolactate synthase, large subunit, biosynthetic type
854	 50.41	-2	958586..958708	+	40	117618730	-	AHA_0888	-	hypothetical protein
855	 63.43	0	958705..959199	+	164	117618097	ilvH	AHA_0889	-	acetolactate synthase 3 regulatory subunit
856	 63.65	0	959593..961746	-	717	117620648	-	AHA_0890	-	phosphate acetyltransferase
857	 60.10	0	961816..963018	-	400	117620181	ackA-1	AHA_0891	-	acetate kinase
858	 59.64	0	963321..963761	+	146	117619308	-	AHA_0892	-	hypothetical protein
859	 61.28	0	963817..964317	-	166	117619197	-	AHA_0893	-	hypothetical protein
860	 60.43	0	964732..965196	-	154	117617543	-	AHA_0894	-	putative peroxiredoxin bcp
861	 57.75	0	965218..966036	-	272	117617968	-	AHA_0895	-	glycine cleavage system transcriptional repressor
862	 61.37	0	966035..966922	+	295	117621032	dapA-1	AHA_0896	-	dihydrodipicolinate synthase
863	 60.80	0	966915..968039	+	374	117621482	-	AHA_0897	-	NlpB/DapX lipoprotein
864	 61.38	0	968093..969208	+	371	117621015	purC	AHA_0898	-	phosphoribosylaminoimidazole-succinocarboxamide synthase
865	 65.67	0	969340..969942	-	200	117621395	-	AHA_0899	-	short chain dehydrogenase
866	 66.89	0	970041..970940	+	299	117619846	-	AHA_0900	-	LysR family transcriptional regulator
867	 64.97	0	971067..971654	+	195	117620325	-	AHA_0901	-	hypothetical protein
868	 63.47	0	971727..972164	+	145	117619761	-	AHA_0902	-	HIT family hydrolase
869	 60.23	0	972263..972961	+	232	117618654	-	AHA_0903	-	hypothetical protein
870	 61.36	0	973032..974030	-	332	117618872	-	AHA_0904	-	hypothetical protein
871	 63.42	0	974238..976550	+	770	117618265	-	AHA_0905	-	aerobic respiration control sensor protein ArcB
872	 66.08	0	976579..977934	+	451	117617958	dgt	AHA_0906	-	deoxyguanosinetriphosphate triphosphohydrolase
873	 56.86	0	978257..978460	+	67	117621129	-	AHA_0907	-	hypothetical protein
874	 64.56	0	978610..982887	+	1425	117620646	-	AHA_0908	-	virulence sensor protein BvgS, putative
875	 64.90	0	982892..984079	+	395	117619094	-	AHA_0909	-	response regulator
876	 66.87	0	984118..986094	+	658	117618703	-	AHA_0910	-	putative chemotaxis transducer
877	 58.10	0	986214..986318	-	34	117621414	-	AHA_0911	-	hypothetical protein
878	 60.33	0	986320..986871	-	183	117621236	rfaH	AHA_0912	-	transcriptional activator RfaH
879	 58.18	0	986917..987717	-	266	117617918	metQ	AHA_0913	-	D-methionine ABC transporter, periplasmic D-methionine-binding lipoprotein
880	 62.54	0	987743..988396	-	217	117618373	metI	AHA_0914	-	D-methionine ABC transporter, permease protein
881	 62.36	0	988377..989420	-	347	117618849	metN	AHA_0915	-	DL-methionine transporter ATP-binding subunit
882	 57.98	0	989577..990347	+	256	117619307	-	AHA_0916	-	hypothetical protein
883	 66.01	0	990456..991214	-	252	117620904	-	AHA_0917	-	polyphosphate glucokinase
884	 65.78	0	991298..992539	-	413	117621367	-	AHA_0918	-	iron-sulfur cluster-binding protein
885	 67.00	0	992600..994111	+	503	117621242	-	AHA_0919	-	YjeF protein
886	 62.03	0	994120..994593	+	157	117617591	-	AHA_0920	-	hypothetical protein
887	 66.54	0	994584..996149	+	521	117621060	-	AHA_0921	-	N-acetylmuramoyl-L-alanine amidase
888	 64.95	0	996379..998247	+	622	117617892	mutL	AHA_0922	-	DNA mismatch repair protein MutL
889	 62.85	0	998340..999257	+	305	117618481	miaA	AHA_0923	-	tRNA delta(2)-isopentenylpyrophosphate transferase
890	 56.82	-1	999328..999591	+	87	117618986	hfq	AHA_0924	-	RNA chaperone Hfq
891	 59.21	0	999655..1000941	+	428	117618820	-	AHA_0925	-	GTP-binding protein HflX
892	 61.63	0	1001033..1002184	+	383	117619279	hflK	AHA_0926	-	HflK protein
893	 59.10	0	1002188..1003072	+	294	117620058	hflC	AHA_0927	-	HflC protein
894	 66.67	0	1003184..1003372	+	62	117620788	-	AHA_0928	-	hypothetical protein
895	 62.65	0	1003460..1004431	-	323	117617957	-	AHA_0929	-	octaprenyl-diphosphate synthase
896	 52.24	-1	1004674..1004985	+	103	117618363	rplU	AHA_0930	-	ribosomal protein L21
897	 54.65	-1	1005003..1005260	+	85	117619291	rpmA	AHA_0931	-	50S ribosomal protein L27
898	 61.26	0	1005451..1006653	+	400	117619959	obgE	AHA_0932	-	GTPase ObgE
899	 63.09	0	1007048..1008418	+	456	117621004	-	AHA_0933	-	membrane protein
900	 62.71	0	1010327..1010680	-	117	117619198	-	AHA_0935	-	hypothetical protein
901	 63.53	0	1010757..1011107	-	116	117619876	-	AHA_0936	-	hypothetical protein
902	 66.90	0	1011240..1014212	-	990	117620505	-	AHA_0937	-	chemotaxis sensory transducer family protein
903	 67.27	0	1014368..1015357	+	329	117620826	-	AHA_0938	-	flavin dependant oxidoreductase
904	 60.48	0	1015593..1016093	+	166	117619610	-	AHA_0939	-	helix-turn-helix domain-containing protein
905	 64.23	0	1016259..1017080	-	273	117621216	apaH	AHA_0940	-	diadenosine tetraphosphatase
906	 62.53	0	1017087..1017449	-	120	117620563	apaG	AHA_0941	-	ApaG
907	 62.99	0	1017454..1018269	-	271	117618457	ksgA	AHA_0942	-	dimethyladenosine transferase
908	 64.86	0	1018271..1019266	-	331	117618355	pdxA	AHA_0943	-	4-hydroxythreonine-4-phosphate dehydrogenase
909	 63.28	0	1019266..1020564	-	432	117617860	surA	AHA_0944	-	peptidylprolyl cis-trans isomerase SurA
910	 59.47	0	1020595..1023027	-	810	117619364	-	AHA_0945	-	organic solvent tolerance protein
911	 63.90	0	1023202..1024212	+	336	117618880	-	AHA_0946	-	aminoglycoside phosphotransferase
912	 67.71	+1	1024209..1024877	+	222	117618665	-	AHA_0947	-	nucleotidyltransferase family protein
913	 65.10	0	1024897..1025727	+	276	117620161	djlA	AHA_0948	-	co-chaperone DjlA
914	 65.40	0	1025804..1027147	-	447	117620889	-	AHA_0949	-	xanthine/uracil permease family protein
915	 62.89	0	1027911..1029578	-	555	117621170	-	AHA_0950	-	putative ABC transporter ATP-binding protein
916	 67.53	0	1029819..1030394	+	191	117617642	-	AHA_0951	-	Crp family transcriptional regulator
917	 65.68	0	1030455..1030961	+	168	117617941	-	AHA_0952	-	hypothetical protein
918	 65.50	0	1031052..1031825	-	257	117618406	mtnN-1	AHA_0953	-	MTA/SAH nucleosidase
919	 63.98	0	1031997..1032851	-	284	117618644	-	AHA_0954	-	lytic transglycosylase, catalytic
920	 65.20	0	1033036..1033377	-	113	117619059	-	AHA_0955	-	hypothetical protein
921	 64.02	0	1033429..1033617	-	62	117619776	-	AHA_0956	-	hypothetical protein
922	 66.88	0	1033815..1034753	-	312	117620357	-	AHA_0957	-	HTH-type transcriptional regulator XapR
923	 65.82	0	1035084..1035911	+	275	117618165	xapA	AHA_0958	-	purine nucleoside phosphorylase
924	 65.71	0	1035937..1037196	+	419	117618236	-	AHA_0959	-	nucleoside permease
925	 67.54	0	1037259..1038062	+	267	117618854	deoC-1	AHA_0960	-	deoxyribose-phosphate aldolase
926	 66.01	0	1038119..1039030	+	303	117619098	-	AHA_0961	-	hypothetical protein
927	 67.06	0	1039036..1040049	-	337	117620017	-	AHA_0962	-	putative nucleotide sugar epimerase
62.23	MEAN

5.38	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Ad