IslandPathversion 1.0

IslandPath Analysis: Aeromonas hydrophila subsp. hydrophila ATCC 7966



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 62.23 STD DEV: 5.38
Aeromonas hydrophila subsp. hydrophila ATCC 7966, complete genome - 1..4744448
4122 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
668	 56.59	-1	740851..741237	-	128	117620472	-	AHA_0692	-	type IV pilin
669	 57.91	0	741332..741868	+	178	117619228	-	AHA_0693	-	putative type IV pilin
670	 56.73	-1	741859..742482	+	207	117619288	-	AHA_0694	-	putative type IV pilin
671	 58.93	0	742484..743581	+	365	117619936	-	AHA_0695	-	hypothetical protein
672	 59.52	0	743594..745693	+	699	117620495	-	AHA_0696	-	putative type IV pilin
673	 62.23	0	745767..747389	+	540	117620870	nadE	AHA_0697	-	NAD synthetase
674	 59.00	0	747399..747737	+	112	117621431	glnB	AHA_0698	-	nitrogen regulatory protein P-II 1
675	 61.24	0	747748..748392	+	214	117619947	-	AHA_0699	-	transcriptional regulatory protein
676	 62.55	0	748411..748920	+	169	117620514	luxS	AHA_0700	-	S-ribosylhomocysteinase
677	 61.18	0	748983..749948	-	321	117618610	-	AHA_0701	-	GGDEF family protein
678	 61.67	0	750140..752539	+	799	117619104	rnr	AHA_0702	-	ribonuclease R
679	 66.27	0	752536..753285	+	249	117617585	-	AHA_0703	-	RNA methyltransferase
680	 62.79	0	753296..753862	+	188	117618186	-	AHA_0704	-	cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinase
681	 62.00	0	753920..754369	+	149	117619781	-	AHA_0705	-	acetyltransferase
682	 65.02	0	754597..755448	+	283	117620335	-	AHA_0706	-	drug/metabolite exporter family protein
683	 68.70	+1	755566..756402	+	278	117620152	-	AHA_0707	-	drug/metabolite exporter (DME) family protein
684	 66.78	0	756436..757284	-	282	117618710	-	AHA_0708	-	hypothetical protein
685	 66.02	0	757392..758630	-	412	117619097	mntH	AHA_0709	-	manganese transport protein MntH
686	 55.04	-1	758853..759239	+	128	117617863	rpsF	AHA_0710	-	ribosomal protein S6
687	 52.38	-1	759270..759500	+	76	117618475	rpsR	AHA_0711	-	ribosomal protein S18
688	 56.38	-1	759553..759999	+	148	117620987	rplI	AHA_0712	-	ribosomal protein L9
689	 65.72	0	760101..760841	+	246	117621443	-	AHA_0713	-	ferredoxin--NADP reductase
690	 57.55	0	760894..761211	-	105	117621217	-	AHA_0714	-	hypothetical protein
691	 64.22	0	761574..762512	+	312	117620370	-	AHA_0715	-	hypothetical protein
692	 56.86	0	762562..762765	-	67	117619827	-	AHA_0716	-	hypothetical protein
693	 68.81	+1	762774..763751	+	325	117621466	-	AHA_0717	-	quinone oxidoreductase
694	 62.33	0	763748..764185	+	145	117620984	-	AHA_0718	-	hypothetical protein
695	 63.47	0	764205..767018	+	937	117620388	-	AHA_0719	-	M16B family peptidase
696	 63.96	0	767079..768668	+	529	117619815	gshA	AHA_0720	-	glutamate--cysteine ligase
697	 63.79	0	768923..770137	+	404	117618747	-	AHA_0721	-	hypothetical protein
698	 63.32	0	770220..772010	-	596	117618031	-	AHA_0722	-	long-chain-fatty-acid--CoA ligase-like protein
699	 65.57	0	772197..772742	+	181	117617473	-	AHA_0723	-	hypothetical protein
700	 64.89	0	772768..773217	-	149	117621110	rimI	AHA_0724	-	ribosomal-protein-alanine acetyltransferase
701	 66.00	0	773947..775593	+	548	117621394	-	AHA_0725	-	ATPase
702	 67.42	0	775781..777100	+	439	117619908	yieM	AHA_0726	-	hypothetical protein
703	 66.07	0	777110..778114	-	334	117620507	-	AHA_0727	-	diguanylate cyclase/phosphodiesterase
704	 66.67	0	778338..779258	+	306	117618901	-	AHA_0728	-	TPR repeat-containing protein
705	 65.80	0	779375..780184	+	269	117621244	-	AHA_0729	-	GGDEF/response regulator receiver domain-containing protein
706	 61.31	0	780442..782028	+	528	117617465	prfC	AHA_0730	-	peptide chain release factor 3
707	 60.77	0	782197..782535	+	112	117618535	-	AHA_0731	-	steroid delta-isomerase domain-containing protein
708	 72.12	+1	782602..783096	-	164	117619174	-	AHA_0732	-	transcriptional regulatory protein
709	 70.15	+1	783159..783617	+	152	117620283	-	AHA_0733	-	alkylhydroperoxidase AhpD core
710	 69.33	+1	783675..784613	-	312	117619941	-	AHA_0734	-	MarR family transcriptional regulator
711	 64.17	0	784819..785940	-	373	117620292	xenB	AHA_0735	-	xenobiotic reductase B
712	 67.55	0	786045..786611	+	188	117619843	-	AHA_0736	-	TetR family transcriptional regulator
713	 64.16	0	786751..787707	-	318	117619194	-	AHA_0737	-	LysR family transcriptional regulator
714	 63.66	0	787858..788955	+	365	117618745	-	AHA_0738	-	agmatine deiminase
715	 65.43	0	789082..790785	+	567	117618013	-	AHA_0739	-	amidase
716	 62.60	0	792493..793254	+	253	117617449	-	AHA_0740	-	beta-lactamase
717	 60.79	0	793418..794710	+	430	117619892	-	AHA_0741	-	hypothetical protein
718	 65.31	0	794781..796031	-	416	117621455	-	AHA_0742	-	putative ATP-dependent RNA helicase RhlE
719	 68.05	+1	796134..797003	-	289	117618645	-	AHA_0743	-	regulatory protein, LysR:LysR, substrate-binding
720	 70.15	+1	797223..798455	+	410	117619225	-	AHA_0744	-	valanimycin resistance, putative
721	 69.08	+1	798462..798917	-	151	117617475	-	AHA_0745	-	hypothetical protein
722	 61.39	0	799088..799996	+	302	117618043	-	AHA_0746	-	hypothetical protein
723	 69.39	+1	800063..800356	-	97	117620970	-	AHA_0747	-	hypothetical protein
724	 61.50	0	800502..801062	-	186	117621527	-	AHA_0748	-	carbonic anhydrase
725	 64.25	0	801320..801940	+	206	117619766	-	AHA_0749	-	ribonuclease T2 family protein
726	 65.96	0	802009..802293	+	94	117620331	-	AHA_0750	-	hypothetical protein
727	 65.34	0	802290..803348	+	352	117620898	-	AHA_0751	-	2-nitropropane dioxygenase family oxidoreductase
728	 58.39	0	809221..810054	+	277	117621531	-	AHA_0757	-	MutT/nudix family protein
729	 67.32	0	810083..811306	-	407	117619558	-	AHA_0758	-	two-component system sensor kinase
730	 64.76	0	811363..812043	-	226	117620485	-	AHA_0759	-	transcriptional regulatory protein CpxR
731	 68.56	+1	812205..813365	+	386	117619326	-	AHA_0760	-	macrolide-specific efflux protein MacA
732	 68.21	+1	813368..815314	+	648	117619856	-	AHA_0761	-	macrolide-specific ABC-type efflux carrier
733	 62.01	0	815619..816455	-	278	117618623	-	AHA_0762	-	glutamine/glutamate ABC transporter, periplasmic glutamine/glutamate-binding protein
734	 62.34	0	816452..817213	-	253	117619239	-	AHA_0763	-	ABC transporter
735	 65.61	0	817210..817872	-	220	117621263	-	AHA_0764	-	glutamine transport system permease protein GlnP
736	 64.41	0	817947..818612	-	221	117617583	-	AHA_0765	-	glutamine/glutamate ABC transporter, permease protein
737	 70.05	+1	818609..819820	-	403	117620451	-	AHA_0766	-	threonine synthase
738	 65.32	0	820056..822203	+	715	117620927	-	AHA_0767	-	prolyl endopeptidase
739	 67.55	0	822407..824566	+	719	117621162	-	AHA_0768	-	AsmA protein
740	 61.45	0	824742..825278	+	178	117619692	-	AHA_0769	-	acetyltransferase
741	 68.84	+1	825334..826068	+	244	117620215	-	AHA_0770	-	3-oxoacyl-[acyl-carrier-protein] reductase
742	 67.21	0	826119..829052	-	977	117618634	-	AHA_0771	-	glutamate-ammonia ligase adenylyltransferase
743	 63.49	0	829124..829564	-	146	117618826	-	AHA_0772	-	acetyltransferase
744	 64.91	0	829745..830995	-	416	117619329	-	AHA_0773	-	methyl-accepting chemotaxis protein
745	 60.10	0	831027..831848	+	273	117617903	-	AHA_0774	-	ion transporter, putative
746	 60.23	0	832001..832606	+	201	117618349	-	AHA_0775	-	arylsulfatase
747	 66.45	0	832876..836040	+	1054	117620021	-	AHA_0776	-	bifunctional proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase
748	 67.18	0	836241..837020	+	259	117620428	-	AHA_0777	-	NUDIX family hydrolase
749	 63.14	0	837040..838230	+	396	117619073	hemE	AHA_0778	-	uroporphyrinogen decarboxylase
750	 63.87	0	838411..839340	+	309	117617581	-	AHA_0779	-	ROK family protein
751	 59.64	0	839390..840400	+	336	117618136	epd	AHA_0780	-	erythrose 4-phosphate dehydrogenase
752	 59.79	0	840463..841626	+	387	117621197	pgk	AHA_0781	-	phosphoglycerate kinase
753	 58.15	0	841743..842822	+	359	117619723	fbaA	AHA_0782	-	fructose-bisphosphate aldolase
754	 64.21	0	843043..844347	+	434	117620290	-	AHA_0783	-	oxidoreductase
755	 58.94	0	844532..844945	-	137	117618844	-	AHA_0784	-	hypothetical protein
756	 65.76	0	845070..846842	-	590	117617871	dsbD	AHA_0785	-	thiol:disulfide interchange protein DsbD
757	 61.03	0	846839..847246	-	135	117617493	cutA	AHA_0786	-	divalent-cation tolerance protein CutA
758	 58.54	0	847323..847691	+	122	117618081	-	AHA_0787	-	hypothetical protein
759	 60.73	0	847787..848224	-	145	117618118	-	AHA_0788	-	transmembrane pair
760	 69.17	+1	848349..849227	+	292	117620373	-	AHA_0789	-	regulatory protein, LysR:LysR, substrate-binding
761	 64.90	0	849241..850146	-	301	117619784	-	AHA_0790	-	chain A, Ygfz protein
762	 61.48	0	850260..850529	+	89	117621545	-	AHA_0791	-	TPR repeat-containing protein
763	 68.78	+1	850549..850926	+	125	117620958	-	AHA_0792	-	hypothetical protein
764	 64.37	0	851151..852758	-	535	117617572	nadB	AHA_0793	-	L-aspartate oxidase
765	 54.30	-1	852941..853522	+	193	117621092	-	AHA_0794	-	RNA polymerase sigma factor RpoE
766	 61.08	0	853545..854135	+	196	117619289	rseA	AHA_0795	-	sigma-E factor negative regulatory protein
767	 62.63	0	854071..855135	+	354	117618157	rseB	AHA_0796	-	sigma-E factor regulatory protein RseB
62.23	MEAN

5.38	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University<