IslandPathversion 1.0

IslandPath Analysis: Aeromonas hydrophila subsp. hydrophila ATCC 7966



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 62.23 STD DEV: 5.38
Aeromonas hydrophila subsp. hydrophila ATCC 7966, complete genome - 1..4744448
4122 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
629	 65.12	0	702367..703272	+	301	117619262	-	AHA_0653	-	TyrA protein
630	 59.45	0	703359..703829	-	156	117618795	argR	AHA_0654	-	arginine repressor
631	 61.81	0	704031..704771	+	246	117620344	-	AHA_0655	-	arginine ABC transporter, ATP-binding protein
632	 59.62	0	704797..705534	+	245	117619357	-	AHA_0656	-	arginine ABC transporter, periplasmic arginine-binding protein ArtI
633	 65.75	0	705538..706188	+	216	117618504	-	AHA_0657	-	arginine ABC transporter, permease protein ArtQ
634	 63.65	0	706191..706853	+	220	117618047	artM	AHA_0658	-	arginine transporter permease subunit ArtM
635	 60.68	0	707075..708010	+	311	117617596	mdh	AHA_0659	-	malate dehydrogenase
636	 66.67	0	708135..709046	+	303	117621251	-	AHA_0660	-	sodium-type flagellar motor component
637	 60.64	0	709149..710342	-	397	117621376	-	AHA_0661	-	flavohemoprotein
638	 57.91	0	710453..710920	+	155	117620851	-	AHA_0662	-	Rrf2 family protein
639	 59.56	0	710954..712234	-	426	117617901	-	AHA_0663	-	putative transporter
640	 61.36	0	712275..713066	-	263	117618356	-	AHA_0664	-	putative cytochrome C assembly protein
641	 61.51	0	713341..714717	+	458	117621132	ffh	AHA_0665	-	signal recognition particle protein
642	 53.82	-1	714902..715150	+	82	117620936	rpsP	AHA_0666	-	ribosomal protein S16
643	 52.30	-1	715175..715696	+	173	117620610	rimM	AHA_0667	-	16S rRNA processing protein RimM
644	 57.20	0	715731..716480	+	249	117621055	trmD	AHA_0668	-	tRNA (guanine-N1)-methyltransferase
645	 52.30	-1	716513..716860	+	115	117619727	rplS	AHA_0669	-	50S ribosomal protein L19
646	 60.30	0	716964..717293	-	109	117620200	-	AHA_0670	-	1,4-alpha-glucan branching enzyme
647	 64.89	0	717376..718050	-	224	117620550	mutH	AHA_0671	-	DNA mismatch repair protein
648	 56.63	-1	718784..719311	+	175	117621151	-	AHA_0672	-	NUDIX family hydrolase
649	 63.25	0	719326..721605	+	759	117619860	ptsI-1	AHA_0673	-	phosphoenolpyruvate-protein phosphotransferase
650	 59.88	0	721673..722497	+	274	117620251	lgt	AHA_0674	-	prolipoprotein diacylglyceryl transferase
651	 60.88	0	722497..723291	+	264	117618975	thyA	AHA_0675	-	thymidylate synthase
652	 63.39	0	723518..724708	+	396	117619993	nhaA	AHA_0676	-	Na+/H+ antiporter NhaA
653	 60.02	0	725099..726031	+	310	117621063	nhaR	AHA_0677	-	transcriptional activator NhaR
654	 59.02	0	726057..726383	+	108	117620739	-	AHA_0678	-	nodulation protein NolR
655	 54.92	-1	726434..726697	-	87	117618088	rpsT	AHA_0679	-	ribosomal protein S20
656	 62.52	0	726889..728454	+	521	117618300	mviN	AHA_0680	-	integral membrane protein MviN
657	 60.41	0	728596..729570	+	324	117619272	ribF	AHA_0681	-	riboflavin biosynthesis protein RibF
658	 62.51	0	729570..732431	+	953	117619483	ileS	AHA_0682	-	isoleucyl-tRNA synthetase
659	 60.52	0	732431..732934	+	167	117618899	lspA	AHA_0683	-	signal peptidase II
660	 62.03	0	732931..733383	+	150	117620110	fkpB	AHA_0684	-	FKBP-type peptidyl-prolyl cis-trans isomerase FkpB
661	 64.10	0	733383..734318	+	311	117619589	ispH	AHA_0685	-	4-hydroxy-3-methylbut-2-enyl diphosphate reductase
662	 61.71	0	734580..735083	+	167	117620299	-	AHA_0686	-	putative type IV pilin
663	 62.56	0	735080..735493	+	137	117619848	pilV	AHA_0687	-	type IV pilus modification protein PilV
664	 63.56	0	735490..736584	+	364	117618164	-	AHA_0688	-	putative type IV pilin
665	 63.73	0	736595..737071	+	158	117617938	-	AHA_0689	-	hypothetical protein
666	 60.79	0	737083..740436	+	1117	117621096	-	AHA_0690	-	type IV pilus biogenesis protein
667	 61.94	0	740445..740846	+	133	117620932	-	AHA_0691	-	type IV pilin
668	 56.59	-1	740851..741237	-	128	117620472	-	AHA_0692	-	type IV pilin
669	 57.91	0	741332..741868	+	178	117619228	-	AHA_0693	-	putative type IV pilin
670	 56.73	-1	741859..742482	+	207	117619288	-	AHA_0694	-	putative type IV pilin
671	 58.93	0	742484..743581	+	365	117619936	-	AHA_0695	-	hypothetical protein
672	 59.52	0	743594..745693	+	699	117620495	-	AHA_0696	-	putative type IV pilin
673	 62.23	0	745767..747389	+	540	117620870	nadE	AHA_0697	-	NAD synthetase
674	 59.00	0	747399..747737	+	112	117621431	glnB	AHA_0698	-	nitrogen regulatory protein P-II 1
675	 61.24	0	747748..748392	+	214	117619947	-	AHA_0699	-	transcriptional regulatory protein
676	 62.55	0	748411..748920	+	169	117620514	luxS	AHA_0700	-	S-ribosylhomocysteinase
677	 61.18	0	748983..749948	-	321	117618610	-	AHA_0701	-	GGDEF family protein
678	 61.67	0	750140..752539	+	799	117619104	rnr	AHA_0702	-	ribonuclease R
679	 66.27	0	752536..753285	+	249	117617585	-	AHA_0703	-	RNA methyltransferase
680	 62.79	0	753296..753862	+	188	117618186	-	AHA_0704	-	cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinase
681	 62.00	0	753920..754369	+	149	117619781	-	AHA_0705	-	acetyltransferase
682	 65.02	0	754597..755448	+	283	117620335	-	AHA_0706	-	drug/metabolite exporter family protein
683	 68.70	+1	755566..756402	+	278	117620152	-	AHA_0707	-	drug/metabolite exporter (DME) family protein
684	 66.78	0	756436..757284	-	282	117618710	-	AHA_0708	-	hypothetical protein
685	 66.02	0	757392..758630	-	412	117619097	mntH	AHA_0709	-	manganese transport protein MntH
686	 55.04	-1	758853..759239	+	128	117617863	rpsF	AHA_0710	-	ribosomal protein S6
687	 52.38	-1	759270..759500	+	76	117618475	rpsR	AHA_0711	-	ribosomal protein S18
688	 56.38	-1	759553..759999	+	148	117620987	rplI	AHA_0712	-	ribosomal protein L9
689	 65.72	0	760101..760841	+	246	117621443	-	AHA_0713	-	ferredoxin--NADP reductase
690	 57.55	0	760894..761211	-	105	117621217	-	AHA_0714	-	hypothetical protein
691	 64.22	0	761574..762512	+	312	117620370	-	AHA_0715	-	hypothetical protein
692	 56.86	0	762562..762765	-	67	117619827	-	AHA_0716	-	hypothetical protein
693	 68.81	+1	762774..763751	+	325	117621466	-	AHA_0717	-	quinone oxidoreductase
694	 62.33	0	763748..764185	+	145	117620984	-	AHA_0718	-	hypothetical protein
695	 63.47	0	764205..767018	+	937	117620388	-	AHA_0719	-	M16B family peptidase
696	 63.96	0	767079..768668	+	529	117619815	gshA	AHA_0720	-	glutamate--cysteine ligase
697	 63.79	0	768923..770137	+	404	117618747	-	AHA_0721	-	hypothetical protein
698	 63.32	0	770220..772010	-	596	117618031	-	AHA_0722	-	long-chain-fatty-acid--CoA ligase-like protein
699	 65.57	0	772197..772742	+	181	117617473	-	AHA_0723	-	hypothetical protein
700	 64.89	0	772768..773217	-	149	117621110	rimI	AHA_0724	-	ribosomal-protein-alanine acetyltransferase
701	 66.00	0	773947..775593	+	548	117621394	-	AHA_0725	-	ATPase
702	 67.42	0	775781..777100	+	439	117619908	yieM	AHA_0726	-	hypothetical protein
703	 66.07	0	777110..778114	-	334	117620507	-	AHA_0727	-	diguanylate cyclase/phosphodiesterase
704	 66.67	0	778338..779258	+	306	117618901	-	AHA_0728	-	TPR repeat-containing protein
705	 65.80	0	779375..780184	+	269	117621244	-	AHA_0729	-	GGDEF/response regulator receiver domain-containing protein
706	 61.31	0	780442..782028	+	528	117617465	prfC	AHA_0730	-	peptide chain release factor 3
707	 60.77	0	782197..782535	+	112	117618535	-	AHA_0731	-	steroid delta-isomerase domain-containing protein
708	 72.12	+1	782602..783096	-	164	117619174	-	AHA_0732	-	transcriptional regulatory protein
709	 70.15	+1	783159..783617	+	152	117620283	-	AHA_0733	-	alkylhydroperoxidase AhpD core
710	 69.33	+1	783675..784613	-	312	117619941	-	AHA_0734	-	MarR family transcriptional regulator
711	 64.17	0	784819..785940	-	373	117620292	xenB	AHA_0735	-	xenobiotic reductase B
712	 67.55	0	786045..786611	+	188	117619843	-	AHA_0736	-	TetR family transcriptional regulator
713	 64.16	0	786751..787707	-	318	117619194	-	AHA_0737	-	LysR family transcriptional regulator
714	 63.66	0	787858..788955	+	365	117618745	-	AHA_0738	-	agmatine deiminase
715	 65.43	0	789082..790785	+	567	117618013	-	AHA_0739	-	amidase
716	 62.60	0	792493..793254	+	253	117617449	-	AHA_0740	-	beta-lactamase
717	 60.79	0	793418..794710	+	430	117619892	-	AHA_0741	-	hypothetical protein
718	 65.31	0	794781..796031	-	416	117621455	-	AHA_0742	-	putative ATP-dependent RNA helicase RhlE
719	 68.05	+1	796134..797003	-	289	117618645	-	AHA_0743	-	regulatory protein, LysR:LysR, substrate-binding
720	 70.15	+1	797223..798455	+	410	117619225	-	AHA_0744	-	valanimycin resistance, putative
721	 69.08	+1	798462..798917	-	151	117617475	-	AHA_0745	-	hypothetical protein
722	 61.39	0	799088..799996	+	302	117618043	-	AHA_0746	-	hypothetical protein
723	 69.39	+1	800063..800356	-	97	117620970	-	AHA_0747	-	hypothetical protein
724	 61.50	0	800502..801062	-	186	117621527	-	AHA_0748	-	carbonic anhydrase
725	 64.25	0	801320..801940	+	206	117619766	-	AHA_0749	-	ribonuclease T2 family protein
726	 65.96	0	802009..802293	+	94	117620331	-	AHA_0750	-	hypothetical protein
727	 65.34	0	802290..803348	+	352	117620898	-	AHA_0751	-	2-nitropropane dioxygenase family oxidoreductase
728	 58.39	0	809221..810054	+	277	117621531	-	AHA_0757	-	MutT/nudix family protein
62.23	MEAN

5.38	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.