IslandPathversion 1.0

IslandPath Analysis: Aeromonas hydrophila subsp. hydrophila ATCC 7966



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 62.23 STD DEV: 5.38
Aeromonas hydrophila subsp. hydrophila ATCC 7966, complete genome - 1..4744448
4122 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
621	 65.83	0	694196..695152	+	318	117620180	-	AHA_0645	-	LysR family transcriptional regulator
622	 64.08	0	695335..696531	+	398	117620467	-	AHA_0646	-	nucleoside permease
623	 66.06	0	696794..697288	-	164	117617850	-	AHA_0647	-	methylated-DNA--protein-cysteine methyltransferase
624	 62.11	0	697322..697738	-	138	117617524	-	AHA_0648	-	peptidyl-tRNA hydrolase domain-containing protein
625	 59.59	0	697940..698278	+	112	117619045	-	AHA_0649	-	nitrogen regulatory protein P-II
626	 59.62	0	698486..699493	+	335	117618651	-	AHA_0650	-	iron binding protein FbpA
627	 66.30	0	699534..701159	+	541	117618021	fbpB	AHA_0651	-	iron(III) ABC transporter, permease protein
628	 65.31	0	701229..702263	+	344	117617518	-	AHA_0652	-	iron(III) ABC transporter, ATP-binding protein
629	 65.12	0	702367..703272	+	301	117619262	-	AHA_0653	-	TyrA protein
630	 59.45	0	703359..703829	-	156	117618795	argR	AHA_0654	-	arginine repressor
631	 61.81	0	704031..704771	+	246	117620344	-	AHA_0655	-	arginine ABC transporter, ATP-binding protein
632	 59.62	0	704797..705534	+	245	117619357	-	AHA_0656	-	arginine ABC transporter, periplasmic arginine-binding protein ArtI
633	 65.75	0	705538..706188	+	216	117618504	-	AHA_0657	-	arginine ABC transporter, permease protein ArtQ
634	 63.65	0	706191..706853	+	220	117618047	artM	AHA_0658	-	arginine transporter permease subunit ArtM
635	 60.68	0	707075..708010	+	311	117617596	mdh	AHA_0659	-	malate dehydrogenase
636	 66.67	0	708135..709046	+	303	117621251	-	AHA_0660	-	sodium-type flagellar motor component
637	 60.64	0	709149..710342	-	397	117621376	-	AHA_0661	-	flavohemoprotein
638	 57.91	0	710453..710920	+	155	117620851	-	AHA_0662	-	Rrf2 family protein
639	 59.56	0	710954..712234	-	426	117617901	-	AHA_0663	-	putative transporter
640	 61.36	0	712275..713066	-	263	117618356	-	AHA_0664	-	putative cytochrome C assembly protein
641	 61.51	0	713341..714717	+	458	117621132	ffh	AHA_0665	-	signal recognition particle protein
642	 53.82	-1	714902..715150	+	82	117620936	rpsP	AHA_0666	-	ribosomal protein S16
643	 52.30	-1	715175..715696	+	173	117620610	rimM	AHA_0667	-	16S rRNA processing protein RimM
644	 57.20	0	715731..716480	+	249	117621055	trmD	AHA_0668	-	tRNA (guanine-N1)-methyltransferase
645	 52.30	-1	716513..716860	+	115	117619727	rplS	AHA_0669	-	50S ribosomal protein L19
646	 60.30	0	716964..717293	-	109	117620200	-	AHA_0670	-	1,4-alpha-glucan branching enzyme
647	 64.89	0	717376..718050	-	224	117620550	mutH	AHA_0671	-	DNA mismatch repair protein
648	 56.63	-1	718784..719311	+	175	117621151	-	AHA_0672	-	NUDIX family hydrolase
649	 63.25	0	719326..721605	+	759	117619860	ptsI-1	AHA_0673	-	phosphoenolpyruvate-protein phosphotransferase
650	 59.88	0	721673..722497	+	274	117620251	lgt	AHA_0674	-	prolipoprotein diacylglyceryl transferase
651	 60.88	0	722497..723291	+	264	117618975	thyA	AHA_0675	-	thymidylate synthase
652	 63.39	0	723518..724708	+	396	117619993	nhaA	AHA_0676	-	Na+/H+ antiporter NhaA
653	 60.02	0	725099..726031	+	310	117621063	nhaR	AHA_0677	-	transcriptional activator NhaR
654	 59.02	0	726057..726383	+	108	117620739	-	AHA_0678	-	nodulation protein NolR
655	 54.92	-1	726434..726697	-	87	117618088	rpsT	AHA_0679	-	ribosomal protein S20
656	 62.52	0	726889..728454	+	521	117618300	mviN	AHA_0680	-	integral membrane protein MviN
657	 60.41	0	728596..729570	+	324	117619272	ribF	AHA_0681	-	riboflavin biosynthesis protein RibF
658	 62.51	0	729570..732431	+	953	117619483	ileS	AHA_0682	-	isoleucyl-tRNA synthetase
659	 60.52	0	732431..732934	+	167	117618899	lspA	AHA_0683	-	signal peptidase II
660	 62.03	0	732931..733383	+	150	117620110	fkpB	AHA_0684	-	FKBP-type peptidyl-prolyl cis-trans isomerase FkpB
661	 64.10	0	733383..734318	+	311	117619589	ispH	AHA_0685	-	4-hydroxy-3-methylbut-2-enyl diphosphate reductase
662	 61.71	0	734580..735083	+	167	117620299	-	AHA_0686	-	putative type IV pilin
663	 62.56	0	735080..735493	+	137	117619848	pilV	AHA_0687	-	type IV pilus modification protein PilV
664	 63.56	0	735490..736584	+	364	117618164	-	AHA_0688	-	putative type IV pilin
665	 63.73	0	736595..737071	+	158	117617938	-	AHA_0689	-	hypothetical protein
666	 60.79	0	737083..740436	+	1117	117621096	-	AHA_0690	-	type IV pilus biogenesis protein
667	 61.94	0	740445..740846	+	133	117620932	-	AHA_0691	-	type IV pilin
668	 56.59	-1	740851..741237	-	128	117620472	-	AHA_0692	-	type IV pilin
669	 57.91	0	741332..741868	+	178	117619228	-	AHA_0693	-	putative type IV pilin
670	 56.73	-1	741859..742482	+	207	117619288	-	AHA_0694	-	putative type IV pilin
671	 58.93	0	742484..743581	+	365	117619936	-	AHA_0695	-	hypothetical protein
672	 59.52	0	743594..745693	+	699	117620495	-	AHA_0696	-	putative type IV pilin
673	 62.23	0	745767..747389	+	540	117620870	nadE	AHA_0697	-	NAD synthetase
674	 59.00	0	747399..747737	+	112	117621431	glnB	AHA_0698	-	nitrogen regulatory protein P-II 1
675	 61.24	0	747748..748392	+	214	117619947	-	AHA_0699	-	transcriptional regulatory protein
676	 62.55	0	748411..748920	+	169	117620514	luxS	AHA_0700	-	S-ribosylhomocysteinase
677	 61.18	0	748983..749948	-	321	117618610	-	AHA_0701	-	GGDEF family protein
678	 61.67	0	750140..752539	+	799	117619104	rnr	AHA_0702	-	ribonuclease R
679	 66.27	0	752536..753285	+	249	117617585	-	AHA_0703	-	RNA methyltransferase
680	 62.79	0	753296..753862	+	188	117618186	-	AHA_0704	-	cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinase
681	 62.00	0	753920..754369	+	149	117619781	-	AHA_0705	-	acetyltransferase
682	 65.02	0	754597..755448	+	283	117620335	-	AHA_0706	-	drug/metabolite exporter family protein
683	 68.70	+1	755566..756402	+	278	117620152	-	AHA_0707	-	drug/metabolite exporter (DME) family protein
684	 66.78	0	756436..757284	-	282	117618710	-	AHA_0708	-	hypothetical protein
685	 66.02	0	757392..758630	-	412	117619097	mntH	AHA_0709	-	manganese transport protein MntH
686	 55.04	-1	758853..759239	+	128	117617863	rpsF	AHA_0710	-	ribosomal protein S6
687	 52.38	-1	759270..759500	+	76	117618475	rpsR	AHA_0711	-	ribosomal protein S18
688	 56.38	-1	759553..759999	+	148	117620987	rplI	AHA_0712	-	ribosomal protein L9
689	 65.72	0	760101..760841	+	246	117621443	-	AHA_0713	-	ferredoxin--NADP reductase
690	 57.55	0	760894..761211	-	105	117621217	-	AHA_0714	-	hypothetical protein
691	 64.22	0	761574..762512	+	312	117620370	-	AHA_0715	-	hypothetical protein
692	 56.86	0	762562..762765	-	67	117619827	-	AHA_0716	-	hypothetical protein
693	 68.81	+1	762774..763751	+	325	117621466	-	AHA_0717	-	quinone oxidoreductase
694	 62.33	0	763748..764185	+	145	117620984	-	AHA_0718	-	hypothetical protein
695	 63.47	0	764205..767018	+	937	117620388	-	AHA_0719	-	M16B family peptidase
696	 63.96	0	767079..768668	+	529	117619815	gshA	AHA_0720	-	glutamate--cysteine ligase
697	 63.79	0	768923..770137	+	404	117618747	-	AHA_0721	-	hypothetical protein
698	 63.32	0	770220..772010	-	596	117618031	-	AHA_0722	-	long-chain-fatty-acid--CoA ligase-like protein
699	 65.57	0	772197..772742	+	181	117617473	-	AHA_0723	-	hypothetical protein
700	 64.89	0	772768..773217	-	149	117621110	rimI	AHA_0724	-	ribosomal-protein-alanine acetyltransferase
701	 66.00	0	773947..775593	+	548	117621394	-	AHA_0725	-	ATPase
702	 67.42	0	775781..777100	+	439	117619908	yieM	AHA_0726	-	hypothetical protein
703	 66.07	0	777110..778114	-	334	117620507	-	AHA_0727	-	diguanylate cyclase/phosphodiesterase
704	 66.67	0	778338..779258	+	306	117618901	-	AHA_0728	-	TPR repeat-containing protein
705	 65.80	0	779375..780184	+	269	117621244	-	AHA_0729	-	GGDEF/response regulator receiver domain-containing protein
706	 61.31	0	780442..782028	+	528	117617465	prfC	AHA_0730	-	peptide chain release factor 3
707	 60.77	0	782197..782535	+	112	117618535	-	AHA_0731	-	steroid delta-isomerase domain-containing protein
708	 72.12	+1	782602..783096	-	164	117619174	-	AHA_0732	-	transcriptional regulatory protein
709	 70.15	+1	783159..783617	+	152	117620283	-	AHA_0733	-	alkylhydroperoxidase AhpD core
710	 69.33	+1	783675..784613	-	312	117619941	-	AHA_0734	-	MarR family transcriptional regulator
711	 64.17	0	784819..785940	-	373	117620292	xenB	AHA_0735	-	xenobiotic reductase B
712	 67.55	0	786045..786611	+	188	117619843	-	AHA_0736	-	TetR family transcriptional regulator
713	 64.16	0	786751..787707	-	318	117619194	-	AHA_0737	-	LysR family transcriptional regulator
714	 63.66	0	787858..788955	+	365	117618745	-	AHA_0738	-	agmatine deiminase
715	 65.43	0	789082..790785	+	567	117618013	-	AHA_0739	-	amidase
716	 62.60	0	792493..793254	+	253	117617449	-	AHA_0740	-	beta-lactamase
717	 60.79	0	793418..794710	+	430	117619892	-	AHA_0741	-	hypothetical protein
718	 65.31	0	794781..796031	-	416	117621455	-	AHA_0742	-	putative ATP-dependent RNA helicase RhlE
719	 68.05	+1	796134..797003	-	289	117618645	-	AHA_0743	-	regulatory protein, LysR:LysR, substrate-binding
720	 70.15	+1	797223..798455	+	410	117619225	-	AHA_0744	-	valanimycin resistance, putative
62.23	MEAN

5.38	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecula