IslandPathversion 1.0

IslandPath Analysis: Aeromonas hydrophila subsp. hydrophila ATCC 7966



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 62.23 STD DEV: 5.38
Aeromonas hydrophila subsp. hydrophila ATCC 7966, complete genome - 1..4744448
4122 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
571	 61.46	0	632968..633984	+	338	117620979	argF-1	AHA_0595	-	ornithine carbamoyltransferase
572	 62.78	0	634039..635274	+	411	117621222	argG	AHA_0596	-	argininosuccinate synthase
573	 63.92	0	635484..636869	+	461	117617808	argH	AHA_0597	-	argininosuccinate lyase
574	 31.36	-2	636990..637547	-	185	117618559	-	AHA_0598	-	hypothetical protein
575	 64.07	0	638445..638906	-	153	117619019	-	AHA_0599	-	hypothetical protein
576	 57.14	0	639107..639379	-	90	117620348	-	AHA_0600	-	hypothetical protein
577	 68.13	+1	639428..639769	-	113	117620877	-	AHA_0601	-	integral membrane protein
578	 66.16	0	639766..640356	-	196	117618182	-	AHA_0602	-	maltose O-acetyltransferase
579	 68.25	+1	640437..641699	-	420	117618750	-	AHA_0603	-	MgtC/SapB transporter
580	 64.97	0	641909..642910	+	333	117619708	-	AHA_0604	-	sulfate-binding protein
581	 68.58	+1	642967..643542	+	191	117620157	-	AHA_0605	-	hypothetical protein
582	 64.82	0	643795..644661	+	288	117620616	cysT	AHA_0606	-	sulfate/thiosulfate ABC transporter, permease protein CysT
583	 67.78	+1	644658..645554	+	298	117620656	cysW	AHA_0607	-	sulfate/thiosulfate ABC transporter, permease protein CysW
584	 67.79	+1	645577..646644	+	355	117621086	cysA	AHA_0608	-	sulfate/thiosulfate ABC transporter, ATP-binding protein
585	 65.72	0	646821..647768	+	315	117618462	-	AHA_0609	-	transcriptional regulator CysB-like protein
586	 65.12	0	647841..649325	-	494	117618936	-	AHA_0610	-	N-acetylglucosamine-binding protein A
587	 67.37	0	649679..651376	-	565	117621026	-	AHA_0611	-	methyl-accepting chemotaxis protein
588	 67.86	+1	651672..653519	+	615	117619537	-	AHA_0612	-	oligoendopeptidase F
589	 69.82	+1	653596..654387	+	263	117617472	-	AHA_0613	-	hypothetical protein
590	 68.08	+1	654401..656596	-	731	117617994	-	AHA_0614	-	hypothetical protein
591	 65.68	0	656878..657588	+	236	117620406	-	AHA_0615	-	hypothetical protein
592	 65.55	0	657609..658952	+	447	117618809	-	AHA_0616	-	hypothetical protein
593	 68.22	+1	659059..662220	-	1053	117619629	-	AHA_0617	-	putative Tricorn protease homolog 1
594	 57.32	0	662465..662956	+	163	117619935	-	AHA_0618	-	ErfK/YbiS/YcfS/YnhG family protein
595	 66.81	0	663105..663824	+	239	117620691	-	AHA_0619	-	AzlC family protein
596	 67.58	0	664285..665811	+	508	117620230	-	AHA_0620	-	hypothetical protein
597	 71.36	+1	665849..666700	+	283	117619658	-	AHA_0621	-	pyruvate formate lyase activating enzyme
598	 56.48	-1	666893..667216	+	107	117619193	-	AHA_0622	-	hypothetical protein
599	 68.61	+1	667259..668182	-	307	117618718	-	AHA_0623	-	LysR family transcriptional regulator
600	 64.75	0	668243..669439	-	398	117619245	-	AHA_0624	-	aromatic amino acid aminotransferase
601	 65.94	0	669609..669884	-	91	117618619	-	AHA_0625	-	hypothetical protein
602	 66.46	0	669956..670915	+	319	117617556	-	AHA_0626	-	heavy metal transporter
603	 65.94	0	670979..671389	-	136	117617553	-	AHA_0627	-	hypothetical protein
604	 63.81	0	671620..675708	+	1362	117619196	-	AHA_0628	-	pullulanase
605	 70.11	+1	675901..678399	-	832	117621449	zntA	AHA_0629	-	zinc/cadmium/mercury/lead-transporting ATPase
606	 64.67	0	678536..679036	+	166	117618015	-	AHA_0630	-	thiol peroxidase
607	 64.96	0	679099..679917	-	272	117620302	-	AHA_0631	-	hypothetical protein
608	 70.76	+1	680086..681306	+	406	117619806	-	AHA_0632	-	DEAD-box ATP dependent DNA helicase
609	 65.66	0	681402..682895	+	497	117619859	-	AHA_0633	-	hypothetical protein
610	 70.22	+1	682969..683757	-	262	117619160	-	AHA_0634	-	hypothetical protein
611	 65.32	0	683754..684869	-	371	117618538	-	AHA_0635	-	endonuclease/exonuclease/phosphatase family protein
612	 67.12	0	685279..686838	-	519	117620604	-	AHA_0636	-	aerotaxis receptor Aer
613	 69.07	+1	687080..687910	-	276	117620202	-	AHA_0637	-	CAAX amino protease
614	 60.14	0	688074..688364	-	96	117619737	-	AHA_0638	-	hypothetical protein
615	 59.20	0	688428..688802	-	124	117619334	-	AHA_0639	-	hypothetical protein
616	 64.43	0	689124..690239	+	371	117618865	-	AHA_0640	-	carbohydrate diacid regulator
617	 67.30	0	690359..691621	+	420	117618404	-	AHA_0641	-	gluconate:H+ symporter (GntP) family protein
618	 67.20	0	691631..692764	+	377	117617950	-	AHA_0642	-	glycerate kinase 2
619	 66.84	0	692975..693538	+	187	117621099	-	AHA_0643	-	hypothetical protein
620	 63.86	0	693601..694134	+	177	117620627	-	AHA_0644	-	glutathione peroxidase
621	 65.83	0	694196..695152	+	318	117620180	-	AHA_0645	-	LysR family transcriptional regulator
622	 64.08	0	695335..696531	+	398	117620467	-	AHA_0646	-	nucleoside permease
623	 66.06	0	696794..697288	-	164	117617850	-	AHA_0647	-	methylated-DNA--protein-cysteine methyltransferase
624	 62.11	0	697322..697738	-	138	117617524	-	AHA_0648	-	peptidyl-tRNA hydrolase domain-containing protein
625	 59.59	0	697940..698278	+	112	117619045	-	AHA_0649	-	nitrogen regulatory protein P-II
626	 59.62	0	698486..699493	+	335	117618651	-	AHA_0650	-	iron binding protein FbpA
627	 66.30	0	699534..701159	+	541	117618021	fbpB	AHA_0651	-	iron(III) ABC transporter, permease protein
628	 65.31	0	701229..702263	+	344	117617518	-	AHA_0652	-	iron(III) ABC transporter, ATP-binding protein
629	 65.12	0	702367..703272	+	301	117619262	-	AHA_0653	-	TyrA protein
630	 59.45	0	703359..703829	-	156	117618795	argR	AHA_0654	-	arginine repressor
631	 61.81	0	704031..704771	+	246	117620344	-	AHA_0655	-	arginine ABC transporter, ATP-binding protein
632	 59.62	0	704797..705534	+	245	117619357	-	AHA_0656	-	arginine ABC transporter, periplasmic arginine-binding protein ArtI
633	 65.75	0	705538..706188	+	216	117618504	-	AHA_0657	-	arginine ABC transporter, permease protein ArtQ
634	 63.65	0	706191..706853	+	220	117618047	artM	AHA_0658	-	arginine transporter permease subunit ArtM
635	 60.68	0	707075..708010	+	311	117617596	mdh	AHA_0659	-	malate dehydrogenase
636	 66.67	0	708135..709046	+	303	117621251	-	AHA_0660	-	sodium-type flagellar motor component
637	 60.64	0	709149..710342	-	397	117621376	-	AHA_0661	-	flavohemoprotein
638	 57.91	0	710453..710920	+	155	117620851	-	AHA_0662	-	Rrf2 family protein
639	 59.56	0	710954..712234	-	426	117617901	-	AHA_0663	-	putative transporter
640	 61.36	0	712275..713066	-	263	117618356	-	AHA_0664	-	putative cytochrome C assembly protein
641	 61.51	0	713341..714717	+	458	117621132	ffh	AHA_0665	-	signal recognition particle protein
642	 53.82	-1	714902..715150	+	82	117620936	rpsP	AHA_0666	-	ribosomal protein S16
643	 52.30	-1	715175..715696	+	173	117620610	rimM	AHA_0667	-	16S rRNA processing protein RimM
644	 57.20	0	715731..716480	+	249	117621055	trmD	AHA_0668	-	tRNA (guanine-N1)-methyltransferase
645	 52.30	-1	716513..716860	+	115	117619727	rplS	AHA_0669	-	50S ribosomal protein L19
646	 60.30	0	716964..717293	-	109	117620200	-	AHA_0670	-	1,4-alpha-glucan branching enzyme
647	 64.89	0	717376..718050	-	224	117620550	mutH	AHA_0671	-	DNA mismatch repair protein
648	 56.63	-1	718784..719311	+	175	117621151	-	AHA_0672	-	NUDIX family hydrolase
649	 63.25	0	719326..721605	+	759	117619860	ptsI-1	AHA_0673	-	phosphoenolpyruvate-protein phosphotransferase
650	 59.88	0	721673..722497	+	274	117620251	lgt	AHA_0674	-	prolipoprotein diacylglyceryl transferase
651	 60.88	0	722497..723291	+	264	117618975	thyA	AHA_0675	-	thymidylate synthase
652	 63.39	0	723518..724708	+	396	117619993	nhaA	AHA_0676	-	Na+/H+ antiporter NhaA
653	 60.02	0	725099..726031	+	310	117621063	nhaR	AHA_0677	-	transcriptional activator NhaR
654	 59.02	0	726057..726383	+	108	117620739	-	AHA_0678	-	nodulation protein NolR
655	 54.92	-1	726434..726697	-	87	117618088	rpsT	AHA_0679	-	ribosomal protein S20
656	 62.52	0	726889..728454	+	521	117618300	mviN	AHA_0680	-	integral membrane protein MviN
657	 60.41	0	728596..729570	+	324	117619272	ribF	AHA_0681	-	riboflavin biosynthesis protein RibF
658	 62.51	0	729570..732431	+	953	117619483	ileS	AHA_0682	-	isoleucyl-tRNA synthetase
659	 60.52	0	732431..732934	+	167	117618899	lspA	AHA_0683	-	signal peptidase II
660	 62.03	0	732931..733383	+	150	117620110	fkpB	AHA_0684	-	FKBP-type peptidyl-prolyl cis-trans isomerase FkpB
661	 64.10	0	733383..734318	+	311	117619589	ispH	AHA_0685	-	4-hydroxy-3-methylbut-2-enyl diphosphate reductase
662	 61.71	0	734580..735083	+	167	117620299	-	AHA_0686	-	putative type IV pilin
663	 62.56	0	735080..735493	+	137	117619848	pilV	AHA_0687	-	type IV pilus modification protein PilV
664	 63.56	0	735490..736584	+	364	117618164	-	AHA_0688	-	putative type IV pilin
665	 63.73	0	736595..737071	+	158	117617938	-	AHA_0689	-	hypothetical protein
666	 60.79	0	737083..740436	+	1117	117621096	-	AHA_0690	-	type IV pilus biogenesis protein
667	 61.94	0	740445..740846	+	133	117620932	-	AHA_0691	-	type IV pilin
668	 56.59	-1	740851..741237	-	128	117620472	-	AHA_0692	-	type IV pilin
669	 57.91	0	741332..741868	+	178	117619228	-	AHA_0693	-	putative type IV pilin
670	 56.73	-1	741859..742482	+	207	117619288	-	AHA_0694	-	putative type IV pilin
62.23	MEAN

5.38	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at