IslandPathversion 1.0

IslandPath Analysis: Aeromonas hydrophila subsp. hydrophila ATCC 7966



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 62.23 STD DEV: 5.38
Aeromonas hydrophila subsp. hydrophila ATCC 7966, complete genome - 1..4744448
4122 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
554	 65.04	0	613223..613714	+	163	117619189	gspM	AHA_0578	-	general secretion pathway protein M
555	 67.20	0	613776..614531	+	251	117617568	gspN	AHA_0579	-	type II secretion system protein N
556	 67.32	0	614592..615503	-	303	117618012	-	AHA_0580	-	LuxR family transcriptional regulator
557	 67.06	0	615563..616831	+	422	117621106	tyrS-1	AHA_0581	-	tyrosyl-tRNA synthetase
558	 65.47	0	616925..617593	-	222	117620716	-	AHA_0582	-	HAD family hydrolase
559	 66.31	0	617780..618340	+	186	117621416	nudE	AHA_0583	-	ADP-ribose diphosphatase NudE
560	 66.42	0	618378..619190	+	270	117617489	cysQ-1	AHA_0584	-	3'(2'),5'-bisphosphate nucleotidase
561	 65.17	0	619602..620873	+	423	117618204	-	AHA_0585	-	serine transporter
562	 66.37	0	620947..621285	-	112	117618376	-	AHA_0586	-	protein CsaA
563	 70.25	+1	621370..622122	-	250	117619091	-	AHA_0587	-	AraC family transcriptional regulator
564	 59.57	0	622158..622481	-	107	117619879	metJ	AHA_0588	-	transcriptional repressor protein MetJ
565	 67.44	0	622690..623853	+	387	117620750	metB	AHA_0589	-	O-succinylhomoserine (thiol)-lyase
566	 66.59	0	623853..626321	+	822	117621282	metL	AHA_0590	-	bifunctional aspartate kinase II/homoserine dehydrogenase II
567	 64.69	0	626974..629607	-	877	117621332	ppc	AHA_0591	-	phosphoenolpyruvate carboxylase
568	 64.05	0	629823..630968	-	381	117620010	argE	AHA_0592	-	acetylornithine deacetylase
569	 64.09	0	631237..632244	+	335	117619636	argC	AHA_0593	-	N-acetyl-gamma-glutamyl-phosphate reductase
570	 65.90	0	632268..633047	+	259	117620306	argB	AHA_0594	-	acetylglutamate kinase
571	 61.46	0	632968..633984	+	338	117620979	argF-1	AHA_0595	-	ornithine carbamoyltransferase
572	 62.78	0	634039..635274	+	411	117621222	argG	AHA_0596	-	argininosuccinate synthase
573	 63.92	0	635484..636869	+	461	117617808	argH	AHA_0597	-	argininosuccinate lyase
574	 31.36	-2	636990..637547	-	185	117618559	-	AHA_0598	-	hypothetical protein
575	 64.07	0	638445..638906	-	153	117619019	-	AHA_0599	-	hypothetical protein
576	 57.14	0	639107..639379	-	90	117620348	-	AHA_0600	-	hypothetical protein
577	 68.13	+1	639428..639769	-	113	117620877	-	AHA_0601	-	integral membrane protein
578	 66.16	0	639766..640356	-	196	117618182	-	AHA_0602	-	maltose O-acetyltransferase
579	 68.25	+1	640437..641699	-	420	117618750	-	AHA_0603	-	MgtC/SapB transporter
580	 64.97	0	641909..642910	+	333	117619708	-	AHA_0604	-	sulfate-binding protein
581	 68.58	+1	642967..643542	+	191	117620157	-	AHA_0605	-	hypothetical protein
582	 64.82	0	643795..644661	+	288	117620616	cysT	AHA_0606	-	sulfate/thiosulfate ABC transporter, permease protein CysT
583	 67.78	+1	644658..645554	+	298	117620656	cysW	AHA_0607	-	sulfate/thiosulfate ABC transporter, permease protein CysW
584	 67.79	+1	645577..646644	+	355	117621086	cysA	AHA_0608	-	sulfate/thiosulfate ABC transporter, ATP-binding protein
585	 65.72	0	646821..647768	+	315	117618462	-	AHA_0609	-	transcriptional regulator CysB-like protein
586	 65.12	0	647841..649325	-	494	117618936	-	AHA_0610	-	N-acetylglucosamine-binding protein A
587	 67.37	0	649679..651376	-	565	117621026	-	AHA_0611	-	methyl-accepting chemotaxis protein
588	 67.86	+1	651672..653519	+	615	117619537	-	AHA_0612	-	oligoendopeptidase F
589	 69.82	+1	653596..654387	+	263	117617472	-	AHA_0613	-	hypothetical protein
590	 68.08	+1	654401..656596	-	731	117617994	-	AHA_0614	-	hypothetical protein
591	 65.68	0	656878..657588	+	236	117620406	-	AHA_0615	-	hypothetical protein
592	 65.55	0	657609..658952	+	447	117618809	-	AHA_0616	-	hypothetical protein
593	 68.22	+1	659059..662220	-	1053	117619629	-	AHA_0617	-	putative Tricorn protease homolog 1
594	 57.32	0	662465..662956	+	163	117619935	-	AHA_0618	-	ErfK/YbiS/YcfS/YnhG family protein
595	 66.81	0	663105..663824	+	239	117620691	-	AHA_0619	-	AzlC family protein
596	 67.58	0	664285..665811	+	508	117620230	-	AHA_0620	-	hypothetical protein
597	 71.36	+1	665849..666700	+	283	117619658	-	AHA_0621	-	pyruvate formate lyase activating enzyme
598	 56.48	-1	666893..667216	+	107	117619193	-	AHA_0622	-	hypothetical protein
599	 68.61	+1	667259..668182	-	307	117618718	-	AHA_0623	-	LysR family transcriptional regulator
600	 64.75	0	668243..669439	-	398	117619245	-	AHA_0624	-	aromatic amino acid aminotransferase
601	 65.94	0	669609..669884	-	91	117618619	-	AHA_0625	-	hypothetical protein
602	 66.46	0	669956..670915	+	319	117617556	-	AHA_0626	-	heavy metal transporter
603	 65.94	0	670979..671389	-	136	117617553	-	AHA_0627	-	hypothetical protein
604	 63.81	0	671620..675708	+	1362	117619196	-	AHA_0628	-	pullulanase
605	 70.11	+1	675901..678399	-	832	117621449	zntA	AHA_0629	-	zinc/cadmium/mercury/lead-transporting ATPase
606	 64.67	0	678536..679036	+	166	117618015	-	AHA_0630	-	thiol peroxidase
607	 64.96	0	679099..679917	-	272	117620302	-	AHA_0631	-	hypothetical protein
608	 70.76	+1	680086..681306	+	406	117619806	-	AHA_0632	-	DEAD-box ATP dependent DNA helicase
609	 65.66	0	681402..682895	+	497	117619859	-	AHA_0633	-	hypothetical protein
610	 70.22	+1	682969..683757	-	262	117619160	-	AHA_0634	-	hypothetical protein
611	 65.32	0	683754..684869	-	371	117618538	-	AHA_0635	-	endonuclease/exonuclease/phosphatase family protein
612	 67.12	0	685279..686838	-	519	117620604	-	AHA_0636	-	aerotaxis receptor Aer
613	 69.07	+1	687080..687910	-	276	117620202	-	AHA_0637	-	CAAX amino protease
614	 60.14	0	688074..688364	-	96	117619737	-	AHA_0638	-	hypothetical protein
615	 59.20	0	688428..688802	-	124	117619334	-	AHA_0639	-	hypothetical protein
616	 64.43	0	689124..690239	+	371	117618865	-	AHA_0640	-	carbohydrate diacid regulator
617	 67.30	0	690359..691621	+	420	117618404	-	AHA_0641	-	gluconate:H+ symporter (GntP) family protein
618	 67.20	0	691631..692764	+	377	117617950	-	AHA_0642	-	glycerate kinase 2
619	 66.84	0	692975..693538	+	187	117621099	-	AHA_0643	-	hypothetical protein
620	 63.86	0	693601..694134	+	177	117620627	-	AHA_0644	-	glutathione peroxidase
621	 65.83	0	694196..695152	+	318	117620180	-	AHA_0645	-	LysR family transcriptional regulator
622	 64.08	0	695335..696531	+	398	117620467	-	AHA_0646	-	nucleoside permease
623	 66.06	0	696794..697288	-	164	117617850	-	AHA_0647	-	methylated-DNA--protein-cysteine methyltransferase
624	 62.11	0	697322..697738	-	138	117617524	-	AHA_0648	-	peptidyl-tRNA hydrolase domain-containing protein
625	 59.59	0	697940..698278	+	112	117619045	-	AHA_0649	-	nitrogen regulatory protein P-II
626	 59.62	0	698486..699493	+	335	117618651	-	AHA_0650	-	iron binding protein FbpA
627	 66.30	0	699534..701159	+	541	117618021	fbpB	AHA_0651	-	iron(III) ABC transporter, permease protein
628	 65.31	0	701229..702263	+	344	117617518	-	AHA_0652	-	iron(III) ABC transporter, ATP-binding protein
629	 65.12	0	702367..703272	+	301	117619262	-	AHA_0653	-	TyrA protein
630	 59.45	0	703359..703829	-	156	117618795	argR	AHA_0654	-	arginine repressor
631	 61.81	0	704031..704771	+	246	117620344	-	AHA_0655	-	arginine ABC transporter, ATP-binding protein
632	 59.62	0	704797..705534	+	245	117619357	-	AHA_0656	-	arginine ABC transporter, periplasmic arginine-binding protein ArtI
633	 65.75	0	705538..706188	+	216	117618504	-	AHA_0657	-	arginine ABC transporter, permease protein ArtQ
634	 63.65	0	706191..706853	+	220	117618047	artM	AHA_0658	-	arginine transporter permease subunit ArtM
635	 60.68	0	707075..708010	+	311	117617596	mdh	AHA_0659	-	malate dehydrogenase
636	 66.67	0	708135..709046	+	303	117621251	-	AHA_0660	-	sodium-type flagellar motor component
637	 60.64	0	709149..710342	-	397	117621376	-	AHA_0661	-	flavohemoprotein
638	 57.91	0	710453..710920	+	155	117620851	-	AHA_0662	-	Rrf2 family protein
639	 59.56	0	710954..712234	-	426	117617901	-	AHA_0663	-	putative transporter
640	 61.36	0	712275..713066	-	263	117618356	-	AHA_0664	-	putative cytochrome C assembly protein
641	 61.51	0	713341..714717	+	458	117621132	ffh	AHA_0665	-	signal recognition particle protein
642	 53.82	-1	714902..715150	+	82	117620936	rpsP	AHA_0666	-	ribosomal protein S16
643	 52.30	-1	715175..715696	+	173	117620610	rimM	AHA_0667	-	16S rRNA processing protein RimM
644	 57.20	0	715731..716480	+	249	117621055	trmD	AHA_0668	-	tRNA (guanine-N1)-methyltransferase
645	 52.30	-1	716513..716860	+	115	117619727	rplS	AHA_0669	-	50S ribosomal protein L19
646	 60.30	0	716964..717293	-	109	117620200	-	AHA_0670	-	1,4-alpha-glucan branching enzyme
647	 64.89	0	717376..718050	-	224	117620550	mutH	AHA_0671	-	DNA mismatch repair protein
648	 56.63	-1	718784..719311	+	175	117621151	-	AHA_0672	-	NUDIX family hydrolase
649	 63.25	0	719326..721605	+	759	117619860	ptsI-1	AHA_0673	-	phosphoenolpyruvate-protein phosphotransferase
650	 59.88	0	721673..722497	+	274	117620251	lgt	AHA_0674	-	prolipoprotein diacylglyceryl transferase
651	 60.88	0	722497..723291	+	264	117618975	thyA	AHA_0675	-	thymidylate synthase
652	 63.39	0	723518..724708	+	396	117619993	nhaA	AHA_0676	-	Na+/H+ antiporter NhaA
653	 60.02	0	725099..726031	+	310	117621063	nhaR	AHA_0677	-	transcriptional activator NhaR
62.23	MEAN

5.38	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the