IslandPath Analysis: Aeromonas hydrophila subsp. hydrophila ATCC 7966



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 62.23   STD DEV: 5.38
Aeromonas hydrophila subsp. hydrophila ATCC 7966, complete genome - 1..4744448
4122 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
11	 66.67	0	10506..11330	-	274	117620591	-	AHA_0010	-	AraC/XylS family transcriptional regulator
12	 65.43	0	11423..12550	+	375	117617786	-	AHA_0012	-	multidrug resistance protein D
13	 64.62	0	12555..13238	-	227	117619332	-	AHA_0013	-	KDP operon transcriptional regulatory protein KdpE
14	 67.40	0	13269..15857	-	862	117618215	-	AHA_0014	-	sensory kinase in two-component regulatory system wtih KdpE
15	 67.23	0	15961..16488	-	175	117618866	kdpC	AHA_0015	-	K+-transporting ATPase, C subunit
16	 66.47	0	16549..18606	-	685	117618415	kdpB	AHA_0016	-	K+-transporting ATPase, B subunit
17	 66.96	0	18662..20344	-	560	117619718	kdpA	AHA_0017	-	potassium-transporting ATPase subunit A
18	 61.54	0	20355..20432	-	25	117619090	-	AHA_0018	-	putative K+-transporting ATPase, F subunit KdpF
19	 63.04	0	20671..22020	-	449	117619313	gor	AHA_0019	-	glutathione-disulfide reductase
20	 60.26	0	22097..24094	-	665	117619870	-	AHA_0020	-	sensor histidine kinase
21	 62.12	0	24187..27267	-	1026	117620367	-	AHA_0021	-	acriflavin resistance plasma membrane protein
22	 61.16	0	27283..28389	-	368	117618003	-	AHA_0022	-	RND efflux transporter
23	 55.93	-1	28422..29045	-	207	117621549	-	AHA_0023	-	TetR family transcriptional regulator
24	 60.95	0	29998..30399	+	133	117617579	-	AHA_0028	-	ricin-type beta-trefoil lectin domain-containing protein
25	 67.50	0	30404..31483	-	359	117618020	pyk-1	AHA_0029	-	pyruvate kinase
26	 63.00	0	31551..32888	-	445	117618107	-	AHA_0030	-	sugar phosphate permease
27	 62.88	0	33247..34461	+	404	117620576	-	AHA_0031	-	ABC-type Fe3+ transport system, periplasmic component
28	 67.04	0	34458..36890	+	810	117617927	-	AHA_0032	-	phosphoglycerate transport regulatory protein PgtB
29	 66.67	0	36874..38151	+	425	117618408	-	AHA_0033	-	C4-dicarboxylate transport transcriptional regulatory protein DctD
30	 69.52	+1	38203..38517	+	104	117618898	-	AHA_0034	-	hypothetical protein
31	 62.61	0	38565..39377	-	270	117619349	-	AHA_0035	-	Cof family hydrolase
32	 66.38	0	39471..40511	-	346	117619794	-	AHA_0036	-	lysophospholipase L2
33	 60.96	0	40508..41173	-	221	117620171	-	AHA_0037	-	chloramphenicol acetyltransferase
34	 63.78	0	41173..41934	-	253	117621457	-	AHA_0038	-	tRNA guanosine-2'-O-methyltransferase
35	 62.51	0	42129..44246	-	705	117621008	-	AHA_0039	-	guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase ((ppGpp)ase)
36	 60.14	0	44384..44659	-	91	117618766	rpoZ	AHA_0040	-	DNA-directed RNA polymerase, omega subunit
37	 57.89	0	44739..45593	-	284	117618161	-	AHA_0041	-	guanylate kinase
38	 66.02	0	45637..46719	-	360	117619639	-	AHA_0042	-	lipopolysaccharide heptosyltransferase
39	 62.61	0	46888..47601	+	237	117619128	kdkA	AHA_0043	-	3-deoxy-D-manno-octulosonic-acid kinase
40	 66.42	0	47729..48535	+	268	117620540	-	AHA_0044	-	sensory box/GGDEF family protein, putative
41	 62.34	0	48543..49397	-	284	117619968	-	AHA_0045	-	hypothetical protein
42	 65.36	0	49441..49899	+	152	117621435	-	AHA_0046	-	hypothetical protein
43	 64.20	0	50054..50215	-	53	117620833	-	AHA_0047	-	hypothetical protein
44	 61.72	0	50200..51129	-	309	117620104	-	AHA_0048	-	hypothetical protein
45	 67.79	+1	51191..52165	+	324	117619911	-	AHA_0050	-	LysR family transcriptional regulator
46	 65.48	0	52144..53157	-	337	117620470	trpS-1	AHA_0049	-	tryptophanyl-tRNA synthetase II
47	 57.24	0	53349..53783	-	144	117617588	-	AHA_0051	-	universal stress protein A
48	 66.41	0	54250..55437	+	395	117619088	-	AHA_0052	-	trans-2-enoyl-CoA reductase
49	 67.28	0	55453..57243	-	596	117618778	-	AHA_0053	-	TPR repeat-containing protein
50	 57.62	0	57348..57977	+	209	117619373	-	AHA_0054	-	ferritin
51	 64.23	0	58135..59322	+	395	117621427	-	AHA_0055	-	hypothetical protein
52	 63.39	0	59510..60730	-	406	117620819	-	AHA_0056	-	fosmidomycin resistance protein
53	 61.19	0	60918..61556	+	212	117621422	-	AHA_0057	-	leucine export protein LeuE
54	 58.77	0	61600..62346	-	248	117621156	-	AHA_0058	-	hypothetical protein
55	 48.79	-2	62289..63905	-	538	117619547	-	AHA_0059	-	hypothetical protein
56	 59.44	0	63908..66385	-	825	117618331	-	AHA_0060	-	hypothetical protein
57	 58.56	0	66437..67102	-	221	117620928	-	AHA_0061	-	hypothetical protein
58	 61.81	0	67162..67737	-	191	117617654	matB	AHA_0062	-	fimbrillin MatB
59	 47.92	-2	68337..68960	+	207	117617713	evgA	AHA_0063	-	positive transcription regulator EvgA
60	 58.50	0	68963..72550	+	1195	117618556	-	AHA_0064	-	virulence sensor protein BvgS
61	 60.32	0	72586..73026	-	146	117619105	-	AHA_0065	-	hypothetical protein
62	 62.62	0	73217..74872	+	551	117619897	-	AHA_0066	-	sensor histidine kinase
63	 60.25	0	75002..75733	+	243	117620033	-	AHA_0067	-	response regulator receiver domain-containing protein
64	 63.78	0	75855..77033	+	392	117620100	-	AHA_0068	-	inner membrane protein YhjX
65	 69.96	+1	77107..78231	-	374	117619549	purK	AHA_0069	-	phosphoribosylaminoimidazole carboxylase ATPase subunit
66	 69.61	+1	78228..78737	-	169	117619504	purE-1	AHA_0070	-	phosphoribosylaminoimidazole carboxylase, catalytic subunit
67	 63.70	0	78800..79102	-	100	117618928	-	AHA_0071	-	hypothetical protein
68	 63.13	0	79107..80180	-	357	117617880	-	AHA_0072	-	sodium bicarbonate cotransporter
69	 67.00	0	80145..81047	+	300	117621439	-	AHA_0073	-	regulatory protein, LysR:LysR, substrate-binding
70	 60.57	0	81312..83147	+	611	117621264	-	AHA_0074	-	vitamin B12 transporter BtuB
71	 60.75	0	83265..84059	+	264	117620688	murI	AHA_0075	-	glutamate racemase
72	 55.69	-1	84078..84569	-	163	117620589	-	AHA_0076	-	RNA-binding protein
73	 60.58	0	90960..92225	+	421	117620035	codA	AHA_0082	-	cytosine deaminase
74	 58.75	0	92274..92690	+	138	117619448	crcB	AHA_0083	-	CrcB protein
75	 58.70	0	92756..93508	+	250	117617949	-	AHA_0084	-	ubiquinone/menaquinone biosynthesis methyltransferase UbiE
76	 64.04	0	93517..94125	+	202	117620541	-	AHA_0085	-	hypothetical protein
77	 63.44	0	94125..95765	+	546	117620525	ubiB	AHA_0086	-	putative ubiquinone biosynthesis protein UbiB
78	 56.22	-1	95806..96054	+	82	117621220	tatA	AHA_0087	-	twin argininte translocase protein A
79	 61.49	0	96058..96501	+	147	117619738	tatB	AHA_0088	-	twin arginine-targeting protein translocase TatB
80	 60.45	0	96498..97253	+	251	117620328	tatC	AHA_0089	-	twin arginine-targeting protein translocase TatC
81	 67.43	0	97365..98150	+	261	117620562	-	AHA_0090	-	deoxyribonuclease TatD
82	 63.53	0	98154..99173	+	339	117620960	hemB	AHA_0091	-	delta-aminolevulinic acid dehydratase
83	 64.66	0	99396..101438	+	680	117619647	prlC	AHA_0092	-	oligopeptidase A
84	 64.11	0	101643..104186	+	847	117617732	-	AHA_0093	-	MorA
85	 68.81	+1	104281..105027	+	248	117617673	-	AHA_0094	-	hypothetical protein
86	 64.44	0	105382..106371	-	329	117618117	-	AHA_0095	-	hypothetical protein
87	 65.19	0	106568..108058	-	496	117621186	-	AHA_0096	-	guanosine-5'-triphosphate,3'-diphosphate pyrophosphatase
88	 60.70	0	108073..109362	-	429	117620754	-	AHA_0097	-	ATP-dependent RNA helicase RhlB
89	 54.43	-1	109476..109802	+	108	117617736	trx	AHA_0098	-	thioredoxin
90	 59.32	0	110010..111275	+	421	117621426	rho	AHA_0099	-	transcription termination factor Rho
91	 65.54	0	111589..112389	+	266	117619367	-	AHA_0100	-	hypothetical protein
92	 64.01	0	112420..113889	+	489	117620729	-	AHA_0101	-	3-octaprenyl-4-hydroxybenzoate carboxy-lyase
93	 63.52	0	114058..114756	+	232	117619055	fre	AHA_0102	-	FMN reductase
94	 61.24	0	114886..115143	-	85	117619287	-	AHA_0103	-	hypothetical protein
95	 64.60	0	115445..117862	+	805	117618922	-	AHA_0104	-	extracellular lipase
96	 66.67	0	118002..118835	-	277	117618367	-	AHA_0105	-	GlpG protein
97	 62.96	0	118832..119155	-	107	117617882	-	AHA_0106	-	thiosulfate sulfurtransferase GlpE
98	 66.67	0	119226..119912	+	228	117619363	-	AHA_0108	-	amino acid transporter LysE
99	 68.35	+1	119909..120742	-	277	117618648	-	AHA_0107	-	AraC family transcriptional regulator
100	 64.81	0	120746..121447	-	233	117620159	-	AHA_0109	-	high-affinity branched-chain amino acid ABC transporter, ATP-binding protein LivF
101	 63.95	0	121458..122231	-	257	117619621	livG	AHA_0110	-	leucine/isoleucine/valine transporter ATP-binding subunit
102	 63.05	0	122228..123499	-	423	117621101	livM	AHA_0111	-	leucine/isoleucine/valine transporter permease subunit
103	 62.78	0	123496..124422	-	308	117617983	-	AHA_0112	-	high-affinity branched-chain amino acid transport system permeaseprotein LivH
104	 61.96	0	124487..125590	-	367	117619840	-	AHA_0113	-	Leu/Ile/Val-binding protein
105	 62.89	0	126044..127048	+	334	117619173	-	AHA_0114	-	ribose operon repressor
106	 65.00	0	127118..128437	-	439	117621038	-	AHA_0115	-	maltose-6'-phosphate glucosidase
107	 58.29	0	128440..130026	-	528	117620317	-	AHA_0116	-	pts system maltose-specific eiicb component
108	 64.55	0	130311..131018	+	235	117618008	-	AHA_0117	-	GntR family transcriptional regulator
109	 70.07	+1	131099..132625	-	508	117617564	-	AHA_0118	-	anaerobic nitric oxide reductase transcription regulator
110	 63.51	0	132796..134283	+	495	117617628	norV	AHA_0119	-	anaerobic nitric oxide reductase flavorubredoxin
62.23	MEAN

5.38	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular