IslandPath Analysis: Aeromonas hydrophila subsp. hydrophila ATCC 7966



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 62.23   STD DEV: 5.38
Aeromonas hydrophila subsp. hydrophila ATCC 7966, complete genome - 1..4744448
4122 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
523	 67.19	0	578767..579342	-	191	117621107	-	AHA_0547	-	molecular chaperones
524	 68.15	+1	579339..581294	-	651	117619534	-	AHA_0548	-	sodium/hydrogen exchanger family protein
525	 62.07	0	581303..581824	-	173	117620651	mtlR	AHA_0549	-	mannitol repressor protein
526	 64.62	0	581933..583201	-	422	117617757	-	AHA_0550	-	mannitol-1-phosphate 5-dehydrogenase
527	 64.38	0	583116..585038	-	640	117618486	-	AHA_0551	-	pts system mannitol-specific eiicba component (eiicba-mtl) (eii-mtl)
528	 67.62	+1	585493..586539	-	348	117619123	-	AHA_0552	-	transport protein
529	 67.63	+1	586561..587286	-	241	117619576	-	AHA_0553	-	TetR family transcriptional regulator
530	 64.64	0	587343..589364	-	673	117619750	rnb	AHA_0554	-	exoribonuclease II
531	 69.33	+1	589465..590364	-	299	117617836	-	AHA_0555	-	chromosome replication initiation inhibitor protein
532	 63.30	0	590632..591255	-	207	117620619	-	AHA_0556	-	autoinducer synthesis protein AhyI
533	 57.63	0	591318..592103	+	261	117618881	ahyR	AHA_0557	-	transcriptional activator protein AhyR
534	 65.06	0	592316..592936	+	206	117619337	-	AHA_0558	-	arginine exporter protein ArgO
535	 62.05	0	593051..595042	+	663	117619728	-	AHA_0559	-	2',3'-cyclic-nucleotide 2'-phosphodiesterase
536	 64.99	0	595108..595584	-	158	117620165	-	AHA_0560	-	surface antigen family protein
537	 64.68	0	595722..596174	-	150	117618419	-	AHA_0561	-	acetyltransferase
538	 67.54	0	596295..596750	-	151	117621048	-	AHA_0562	-	hypothetical protein
539	 66.00	0	596803..598605	-	600	117619368	-	AHA_0563	-	aminopeptidase P
540	 65.62	0	598639..599304	-	221	117618890	-	AHA_0564	-	GntR family transcriptional regulator
541	 60.02	0	599480..601105	-	541	117620524	pckA	AHA_0565	-	phosphoenolpyruvate carboxykinase
542	 60.36	0	601255..602142	-	295	117621508	hslO	AHA_0566	-	33 kDa chaperonin HslO
543	 59.39	0	602248..602838	-	196	117617600	-	AHA_0567	-	heat shock protein 15
544	 60.50	0	602786..603709	+	307	117618034	gspC	AHA_0568	-	general secretion pathway protein C
545	 62.68	0	603731..605764	+	677	117620160	gspD	AHA_0569	-	general secretion pathway protein D
546	 65.80	0	605764..607269	+	501	117618689	gspE	AHA_0570	-	general secretory pathway protein E
547	 63.55	0	607271..608491	+	406	117619869	gspF	AHA_0571	-	general secretion pathway protein F
548	 60.65	0	608607..609038	+	143	117620343	gspG	AHA_0572	-	general secretion pathway protein G
549	 63.59	0	609202..609753	+	183	117620039	gspH	AHA_0573	-	general secretion pathway protein H
550	 63.33	0	609750..610109	+	119	117619700	gspI	AHA_0574	-	general secretion pathway protein I
551	 66.19	0	610178..610807	+	209	117621174	gspJ	AHA_0575	-	general secretion pathway protein J
552	 64.52	0	610897..611922	+	341	117620854	gspK	AHA_0576	-	general secretion pathway protein K
553	 68.69	+1	612042..613226	+	394	117618708	gspL	AHA_0577	-	general secretion pathway protein L
554	 65.04	0	613223..613714	+	163	117619189	gspM	AHA_0578	-	general secretion pathway protein M
555	 67.20	0	613776..614531	+	251	117617568	gspN	AHA_0579	-	type II secretion system protein N
556	 67.32	0	614592..615503	-	303	117618012	-	AHA_0580	-	LuxR family transcriptional regulator
557	 67.06	0	615563..616831	+	422	117621106	tyrS-1	AHA_0581	-	tyrosyl-tRNA synthetase
558	 65.47	0	616925..617593	-	222	117620716	-	AHA_0582	-	HAD family hydrolase
559	 66.31	0	617780..618340	+	186	117621416	nudE	AHA_0583	-	ADP-ribose diphosphatase NudE
560	 66.42	0	618378..619190	+	270	117617489	cysQ-1	AHA_0584	-	3'(2'),5'-bisphosphate nucleotidase
561	 65.17	0	619602..620873	+	423	117618204	-	AHA_0585	-	serine transporter
562	 66.37	0	620947..621285	-	112	117618376	-	AHA_0586	-	protein CsaA
563	 70.25	+1	621370..622122	-	250	117619091	-	AHA_0587	-	AraC family transcriptional regulator
564	 59.57	0	622158..622481	-	107	117619879	metJ	AHA_0588	-	transcriptional repressor protein MetJ
565	 67.44	0	622690..623853	+	387	117620750	metB	AHA_0589	-	O-succinylhomoserine (thiol)-lyase
566	 66.59	0	623853..626321	+	822	117621282	metL	AHA_0590	-	bifunctional aspartate kinase II/homoserine dehydrogenase II
567	 64.69	0	626974..629607	-	877	117621332	ppc	AHA_0591	-	phosphoenolpyruvate carboxylase
568	 64.05	0	629823..630968	-	381	117620010	argE	AHA_0592	-	acetylornithine deacetylase
569	 64.09	0	631237..632244	+	335	117619636	argC	AHA_0593	-	N-acetyl-gamma-glutamyl-phosphate reductase
570	 65.90	0	632268..633047	+	259	117620306	argB	AHA_0594	-	acetylglutamate kinase
571	 61.46	0	632968..633984	+	338	117620979	argF-1	AHA_0595	-	ornithine carbamoyltransferase
572	 62.78	0	634039..635274	+	411	117621222	argG	AHA_0596	-	argininosuccinate synthase
573	 63.92	0	635484..636869	+	461	117617808	argH	AHA_0597	-	argininosuccinate lyase
574	 31.36	-2	636990..637547	-	185	117618559	-	AHA_0598	-	hypothetical protein
575	 64.07	0	638445..638906	-	153	117619019	-	AHA_0599	-	hypothetical protein
576	 57.14	0	639107..639379	-	90	117620348	-	AHA_0600	-	hypothetical protein
577	 68.13	+1	639428..639769	-	113	117620877	-	AHA_0601	-	integral membrane protein
578	 66.16	0	639766..640356	-	196	117618182	-	AHA_0602	-	maltose O-acetyltransferase
579	 68.25	+1	640437..641699	-	420	117618750	-	AHA_0603	-	MgtC/SapB transporter
580	 64.97	0	641909..642910	+	333	117619708	-	AHA_0604	-	sulfate-binding protein
581	 68.58	+1	642967..643542	+	191	117620157	-	AHA_0605	-	hypothetical protein
582	 64.82	0	643795..644661	+	288	117620616	cysT	AHA_0606	-	sulfate/thiosulfate ABC transporter, permease protein CysT
583	 67.78	+1	644658..645554	+	298	117620656	cysW	AHA_0607	-	sulfate/thiosulfate ABC transporter, permease protein CysW
584	 67.79	+1	645577..646644	+	355	117621086	cysA	AHA_0608	-	sulfate/thiosulfate ABC transporter, ATP-binding protein
585	 65.72	0	646821..647768	+	315	117618462	-	AHA_0609	-	transcriptional regulator CysB-like protein
586	 65.12	0	647841..649325	-	494	117618936	-	AHA_0610	-	N-acetylglucosamine-binding protein A
587	 67.37	0	649679..651376	-	565	117621026	-	AHA_0611	-	methyl-accepting chemotaxis protein
588	 67.86	+1	651672..653519	+	615	117619537	-	AHA_0612	-	oligoendopeptidase F
589	 69.82	+1	653596..654387	+	263	117617472	-	AHA_0613	-	hypothetical protein
590	 68.08	+1	654401..656596	-	731	117617994	-	AHA_0614	-	hypothetical protein
591	 65.68	0	656878..657588	+	236	117620406	-	AHA_0615	-	hypothetical protein
592	 65.55	0	657609..658952	+	447	117618809	-	AHA_0616	-	hypothetical protein
593	 68.22	+1	659059..662220	-	1053	117619629	-	AHA_0617	-	putative Tricorn protease homolog 1
594	 57.32	0	662465..662956	+	163	117619935	-	AHA_0618	-	ErfK/YbiS/YcfS/YnhG family protein
595	 66.81	0	663105..663824	+	239	117620691	-	AHA_0619	-	AzlC family protein
596	 67.58	0	664285..665811	+	508	117620230	-	AHA_0620	-	hypothetical protein
597	 71.36	+1	665849..666700	+	283	117619658	-	AHA_0621	-	pyruvate formate lyase activating enzyme
598	 56.48	-1	666893..667216	+	107	117619193	-	AHA_0622	-	hypothetical protein
599	 68.61	+1	667259..668182	-	307	117618718	-	AHA_0623	-	LysR family transcriptional regulator
600	 64.75	0	668243..669439	-	398	117619245	-	AHA_0624	-	aromatic amino acid aminotransferase
601	 65.94	0	669609..669884	-	91	117618619	-	AHA_0625	-	hypothetical protein
602	 66.46	0	669956..670915	+	319	117617556	-	AHA_0626	-	heavy metal transporter
603	 65.94	0	670979..671389	-	136	117617553	-	AHA_0627	-	hypothetical protein
604	 63.81	0	671620..675708	+	1362	117619196	-	AHA_0628	-	pullulanase
605	 70.11	+1	675901..678399	-	832	117621449	zntA	AHA_0629	-	zinc/cadmium/mercury/lead-transporting ATPase
606	 64.67	0	678536..679036	+	166	117618015	-	AHA_0630	-	thiol peroxidase
607	 64.96	0	679099..679917	-	272	117620302	-	AHA_0631	-	hypothetical protein
608	 70.76	+1	680086..681306	+	406	117619806	-	AHA_0632	-	DEAD-box ATP dependent DNA helicase
609	 65.66	0	681402..682895	+	497	117619859	-	AHA_0633	-	hypothetical protein
610	 70.22	+1	682969..683757	-	262	117619160	-	AHA_0634	-	hypothetical protein
611	 65.32	0	683754..684869	-	371	117618538	-	AHA_0635	-	endonuclease/exonuclease/phosphatase family protein
612	 67.12	0	685279..686838	-	519	117620604	-	AHA_0636	-	aerotaxis receptor Aer
613	 69.07	+1	687080..687910	-	276	117620202	-	AHA_0637	-	CAAX amino protease
614	 60.14	0	688074..688364	-	96	117619737	-	AHA_0638	-	hypothetical protein
615	 59.20	0	688428..688802	-	124	117619334	-	AHA_0639	-	hypothetical protein
616	 64.43	0	689124..690239	+	371	117618865	-	AHA_0640	-	carbohydrate diacid regulator
617	 67.30	0	690359..691621	+	420	117618404	-	AHA_0641	-	gluconate:H+ symporter (GntP) family protein
618	 67.20	0	691631..692764	+	377	117617950	-	AHA_0642	-	glycerate kinase 2
619	 66.84	0	692975..693538	+	187	117621099	-	AHA_0643	-	hypothetical protein
620	 63.86	0	693601..694134	+	177	117620627	-	AHA_0644	-	glutathione peroxidase
621	 65.83	0	694196..695152	+	318	117620180	-	AHA_0645	-	LysR family transcriptional regulator
622	 64.08	0	695335..696531	+	398	117620467	-	AHA_0646	-	nucleoside permease
62.23	MEAN

5.38	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the D