IslandPathversion 1.0

IslandPath Analysis: Aeromonas hydrophila subsp. hydrophila ATCC 7966



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 62.23 STD DEV: 5.38
Aeromonas hydrophila subsp. hydrophila ATCC 7966, complete genome - 1..4744448
4122 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
511	 66.81	0	568896..570293	-	465	117618942	-	AHA_0535	-	propeptide, PepSY amd peptidase M4:PepSY-associated TM helix
512	 65.15	0	570566..570961	+	131	117620644	-	AHA_0536	-	hypothetical protein
513	 58.08	0	571145..571435	-	96	117618024	-	AHA_0537	-	hypothetical protein
514	 66.74	0	571508..572884	-	458	117617930	-	AHA_0538	-	ATP-independent RNA helicase DbpA
515	 55.63	-1	573287..574654	+	455	117619447	-	AHA_0539	-	nucleoside permease NupC
516	 68.66	+1	574747..575247	-	166	117617807	-	AHA_0540	-	putative hydrolase
517	 64.68	0	575340..575894	-	184	117620341	-	AHA_0541	-	cytochrome B
518	 53.33	-1	575943..576212	-	89	117619889	-	AHA_0542	-	hypothetical protein
519	 66.45	0	576334..576786	-	150	117621483	-	AHA_0543	-	YaiI/YqxD family protein
520	 65.65	0	576898..577884	+	328	117620991	zntB	AHA_0544	-	zinc transporter
521	 62.62	0	577894..578412	+	172	117618092	-	AHA_0545	-	hypothetical protein
522	 62.65	0	578455..578703	-	82	117618859	-	AHA_0546	-	hypothetical protein
523	 67.19	0	578767..579342	-	191	117621107	-	AHA_0547	-	molecular chaperones
524	 68.15	+1	579339..581294	-	651	117619534	-	AHA_0548	-	sodium/hydrogen exchanger family protein
525	 62.07	0	581303..581824	-	173	117620651	mtlR	AHA_0549	-	mannitol repressor protein
526	 64.62	0	581933..583201	-	422	117617757	-	AHA_0550	-	mannitol-1-phosphate 5-dehydrogenase
527	 64.38	0	583116..585038	-	640	117618486	-	AHA_0551	-	pts system mannitol-specific eiicba component (eiicba-mtl) (eii-mtl)
528	 67.62	+1	585493..586539	-	348	117619123	-	AHA_0552	-	transport protein
529	 67.63	+1	586561..587286	-	241	117619576	-	AHA_0553	-	TetR family transcriptional regulator
530	 64.64	0	587343..589364	-	673	117619750	rnb	AHA_0554	-	exoribonuclease II
531	 69.33	+1	589465..590364	-	299	117617836	-	AHA_0555	-	chromosome replication initiation inhibitor protein
532	 63.30	0	590632..591255	-	207	117620619	-	AHA_0556	-	autoinducer synthesis protein AhyI
533	 57.63	0	591318..592103	+	261	117618881	ahyR	AHA_0557	-	transcriptional activator protein AhyR
534	 65.06	0	592316..592936	+	206	117619337	-	AHA_0558	-	arginine exporter protein ArgO
535	 62.05	0	593051..595042	+	663	117619728	-	AHA_0559	-	2',3'-cyclic-nucleotide 2'-phosphodiesterase
536	 64.99	0	595108..595584	-	158	117620165	-	AHA_0560	-	surface antigen family protein
537	 64.68	0	595722..596174	-	150	117618419	-	AHA_0561	-	acetyltransferase
538	 67.54	0	596295..596750	-	151	117621048	-	AHA_0562	-	hypothetical protein
539	 66.00	0	596803..598605	-	600	117619368	-	AHA_0563	-	aminopeptidase P
540	 65.62	0	598639..599304	-	221	117618890	-	AHA_0564	-	GntR family transcriptional regulator
541	 60.02	0	599480..601105	-	541	117620524	pckA	AHA_0565	-	phosphoenolpyruvate carboxykinase
542	 60.36	0	601255..602142	-	295	117621508	hslO	AHA_0566	-	33 kDa chaperonin HslO
543	 59.39	0	602248..602838	-	196	117617600	-	AHA_0567	-	heat shock protein 15
544	 60.50	0	602786..603709	+	307	117618034	gspC	AHA_0568	-	general secretion pathway protein C
545	 62.68	0	603731..605764	+	677	117620160	gspD	AHA_0569	-	general secretion pathway protein D
546	 65.80	0	605764..607269	+	501	117618689	gspE	AHA_0570	-	general secretory pathway protein E
547	 63.55	0	607271..608491	+	406	117619869	gspF	AHA_0571	-	general secretion pathway protein F
548	 60.65	0	608607..609038	+	143	117620343	gspG	AHA_0572	-	general secretion pathway protein G
549	 63.59	0	609202..609753	+	183	117620039	gspH	AHA_0573	-	general secretion pathway protein H
550	 63.33	0	609750..610109	+	119	117619700	gspI	AHA_0574	-	general secretion pathway protein I
551	 66.19	0	610178..610807	+	209	117621174	gspJ	AHA_0575	-	general secretion pathway protein J
552	 64.52	0	610897..611922	+	341	117620854	gspK	AHA_0576	-	general secretion pathway protein K
553	 68.69	+1	612042..613226	+	394	117618708	gspL	AHA_0577	-	general secretion pathway protein L
554	 65.04	0	613223..613714	+	163	117619189	gspM	AHA_0578	-	general secretion pathway protein M
555	 67.20	0	613776..614531	+	251	117617568	gspN	AHA_0579	-	type II secretion system protein N
556	 67.32	0	614592..615503	-	303	117618012	-	AHA_0580	-	LuxR family transcriptional regulator
557	 67.06	0	615563..616831	+	422	117621106	tyrS-1	AHA_0581	-	tyrosyl-tRNA synthetase
558	 65.47	0	616925..617593	-	222	117620716	-	AHA_0582	-	HAD family hydrolase
559	 66.31	0	617780..618340	+	186	117621416	nudE	AHA_0583	-	ADP-ribose diphosphatase NudE
560	 66.42	0	618378..619190	+	270	117617489	cysQ-1	AHA_0584	-	3'(2'),5'-bisphosphate nucleotidase
561	 65.17	0	619602..620873	+	423	117618204	-	AHA_0585	-	serine transporter
562	 66.37	0	620947..621285	-	112	117618376	-	AHA_0586	-	protein CsaA
563	 70.25	+1	621370..622122	-	250	117619091	-	AHA_0587	-	AraC family transcriptional regulator
564	 59.57	0	622158..622481	-	107	117619879	metJ	AHA_0588	-	transcriptional repressor protein MetJ
565	 67.44	0	622690..623853	+	387	117620750	metB	AHA_0589	-	O-succinylhomoserine (thiol)-lyase
566	 66.59	0	623853..626321	+	822	117621282	metL	AHA_0590	-	bifunctional aspartate kinase II/homoserine dehydrogenase II
567	 64.69	0	626974..629607	-	877	117621332	ppc	AHA_0591	-	phosphoenolpyruvate carboxylase
568	 64.05	0	629823..630968	-	381	117620010	argE	AHA_0592	-	acetylornithine deacetylase
569	 64.09	0	631237..632244	+	335	117619636	argC	AHA_0593	-	N-acetyl-gamma-glutamyl-phosphate reductase
570	 65.90	0	632268..633047	+	259	117620306	argB	AHA_0594	-	acetylglutamate kinase
571	 61.46	0	632968..633984	+	338	117620979	argF-1	AHA_0595	-	ornithine carbamoyltransferase
572	 62.78	0	634039..635274	+	411	117621222	argG	AHA_0596	-	argininosuccinate synthase
573	 63.92	0	635484..636869	+	461	117617808	argH	AHA_0597	-	argininosuccinate lyase
574	 31.36	-2	636990..637547	-	185	117618559	-	AHA_0598	-	hypothetical protein
575	 64.07	0	638445..638906	-	153	117619019	-	AHA_0599	-	hypothetical protein
576	 57.14	0	639107..639379	-	90	117620348	-	AHA_0600	-	hypothetical protein
577	 68.13	+1	639428..639769	-	113	117620877	-	AHA_0601	-	integral membrane protein
578	 66.16	0	639766..640356	-	196	117618182	-	AHA_0602	-	maltose O-acetyltransferase
579	 68.25	+1	640437..641699	-	420	117618750	-	AHA_0603	-	MgtC/SapB transporter
580	 64.97	0	641909..642910	+	333	117619708	-	AHA_0604	-	sulfate-binding protein
581	 68.58	+1	642967..643542	+	191	117620157	-	AHA_0605	-	hypothetical protein
582	 64.82	0	643795..644661	+	288	117620616	cysT	AHA_0606	-	sulfate/thiosulfate ABC transporter, permease protein CysT
583	 67.78	+1	644658..645554	+	298	117620656	cysW	AHA_0607	-	sulfate/thiosulfate ABC transporter, permease protein CysW
584	 67.79	+1	645577..646644	+	355	117621086	cysA	AHA_0608	-	sulfate/thiosulfate ABC transporter, ATP-binding protein
585	 65.72	0	646821..647768	+	315	117618462	-	AHA_0609	-	transcriptional regulator CysB-like protein
586	 65.12	0	647841..649325	-	494	117618936	-	AHA_0610	-	N-acetylglucosamine-binding protein A
587	 67.37	0	649679..651376	-	565	117621026	-	AHA_0611	-	methyl-accepting chemotaxis protein
588	 67.86	+1	651672..653519	+	615	117619537	-	AHA_0612	-	oligoendopeptidase F
589	 69.82	+1	653596..654387	+	263	117617472	-	AHA_0613	-	hypothetical protein
590	 68.08	+1	654401..656596	-	731	117617994	-	AHA_0614	-	hypothetical protein
591	 65.68	0	656878..657588	+	236	117620406	-	AHA_0615	-	hypothetical protein
592	 65.55	0	657609..658952	+	447	117618809	-	AHA_0616	-	hypothetical protein
593	 68.22	+1	659059..662220	-	1053	117619629	-	AHA_0617	-	putative Tricorn protease homolog 1
594	 57.32	0	662465..662956	+	163	117619935	-	AHA_0618	-	ErfK/YbiS/YcfS/YnhG family protein
595	 66.81	0	663105..663824	+	239	117620691	-	AHA_0619	-	AzlC family protein
596	 67.58	0	664285..665811	+	508	117620230	-	AHA_0620	-	hypothetical protein
597	 71.36	+1	665849..666700	+	283	117619658	-	AHA_0621	-	pyruvate formate lyase activating enzyme
598	 56.48	-1	666893..667216	+	107	117619193	-	AHA_0622	-	hypothetical protein
599	 68.61	+1	667259..668182	-	307	117618718	-	AHA_0623	-	LysR family transcriptional regulator
600	 64.75	0	668243..669439	-	398	117619245	-	AHA_0624	-	aromatic amino acid aminotransferase
601	 65.94	0	669609..669884	-	91	117618619	-	AHA_0625	-	hypothetical protein
602	 66.46	0	669956..670915	+	319	117617556	-	AHA_0626	-	heavy metal transporter
603	 65.94	0	670979..671389	-	136	117617553	-	AHA_0627	-	hypothetical protein
604	 63.81	0	671620..675708	+	1362	117619196	-	AHA_0628	-	pullulanase
605	 70.11	+1	675901..678399	-	832	117621449	zntA	AHA_0629	-	zinc/cadmium/mercury/lead-transporting ATPase
606	 64.67	0	678536..679036	+	166	117618015	-	AHA_0630	-	thiol peroxidase
607	 64.96	0	679099..679917	-	272	117620302	-	AHA_0631	-	hypothetical protein
608	 70.76	+1	680086..681306	+	406	117619806	-	AHA_0632	-	DEAD-box ATP dependent DNA helicase
609	 65.66	0	681402..682895	+	497	117619859	-	AHA_0633	-	hypothetical protein
610	 70.22	+1	682969..683757	-	262	117619160	-	AHA_0634	-	hypothetical protein
62.23	MEAN

5.38	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology