IslandPathversion 1.0

IslandPath Analysis: Aeromonas hydrophila subsp. hydrophila ATCC 7966



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 62.23 STD DEV: 5.38
Aeromonas hydrophila subsp. hydrophila ATCC 7966, complete genome - 1..4744448
4122 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
474	 65.58	0	531920..532378	+	152	117618519	-	AHA_0498	-	Pab N-terminal acetyltransferase
475	 66.26	0	532393..532638	+	81	117618197	-	AHA_0499	-	hypothetical protein
476	 67.47	0	532695..533441	+	248	117617619	-	AHA_0500	-	NADP-dependent l-serine/l-allo-threonine dehydrogenase ydfg
477	 62.62	0	533503..535107	-	534	117621425	-	AHA_0501	-	cytosol non-specific dipeptidase
478	 62.25	0	535441..535893	+	150	117621182	-	AHA_0502	-	hypothetical protein
479	 64.26	0	536092..536673	-	193	117619716	-	AHA_0503	-	hypothetical protein
480	 66.58	0	536885..538060	+	391	117620296	-	AHA_0504	-	NADH-dependent iron-containing alcohol dehydrogenase
481	 65.38	0	538265..538963	-	232	117619429	-	AHA_0505	-	glutathione S-transferase III
482	 65.80	0	539003..540271	-	422	117619400	-	AHA_0506	-	O-acetylhomoserine sulfhydrylase MetY
483	 59.89	0	540428..540604	-	58	117620014	-	AHA_0507	-	hypothetical protein
484	 69.27	+1	540675..542438	+	587	117619619	-	AHA_0508	-	solute-binding family 5 protein
485	 60.61	0	542474..542869	+	131	117618732	-	AHA_0509	-	thioesterase family protein
486	 65.55	0	542901..543614	+	237	117617996	-	AHA_0510	-	hypothetical protein
487	 71.91	+1	543679..544422	-	247	117619265	-	AHA_0511	-	lipase chaperone, putative
488	 65.77	0	544419..545420	-	333	117618653	-	AHA_0512	-	lipase
489	 48.78	-2	545500..545622	-	40	117617828	-	AHA_0513	-	hypothetical protein
490	 68.08	+1	545621..546046	+	141	117617494	-	AHA_0514	-	hypothetical protein
491	 64.55	0	546068..546682	+	204	117621382	-	AHA_0515	-	superoxide dismutase (Mn)
492	 65.89	0	546736..547761	-	341	117618289	-	AHA_0516	-	sanA protein
493	 64.96	0	547928..550675	-	915	117620075	-	AHA_0517	-	collagenase family protein
494	 59.41	0	551179..551550	-	123	117619538	-	AHA_0518	-	putative fimbrial protein
495	 56.54	-1	552789..553331	+	180	117621241	-	AHA_0519	-	fimbrial protein
496	 52.70	-1	553413..553820	+	135	117620684	-	AHA_0520	-	hypothetical protein
497	 59.53	0	553888..556422	+	844	117621351	-	AHA_0521	-	outer membrane usher protein
498	 57.10	0	556433..557164	+	243	117620694	-	AHA_0522	-	fimbrial chaperone protein
499	 42.71	-2	557169..558203	+	344	117618412	-	AHA_0523	-	fimbrial protein
500	 58.51	0	558215..558766	+	183	117617720	-	AHA_0524	-	fimbrial protein
501	 50.29	-2	558769..559452	-	227	117619564	-	AHA_0525	-	hypothetical protein
502	 47.95	-2	559449..560009	-	186	117621270	-	AHA_0526	-	transcriptional regulatory protein, C terminal
503	 68.37	+1	560311..561717	-	468	117619214	menE	AHA_0527	-	O-succinylbenzoate-CoA ligase
504	 67.31	0	561728..562657	-	309	117618896	menC	AHA_0528	-	o-succinylbenzoic acid (OSB) synthetase
505	 63.07	0	562657..563517	-	286	117620309	menB	AHA_0529	-	naphthoate synthase
506	 68.48	+1	563510..564280	-	256	117619877	-	AHA_0530	-	alpha/beta fold family hydrolase
507	 68.57	+1	564270..566000	-	576	117620190	menD	AHA_0531	-	2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylic acid synthase/2-oxoglutarate decarboxylase
508	 68.60	+1	566035..567381	-	448	117620360	menF	AHA_0532	-	menaquinone-specific isochorismate synthase
509	 64.83	0	567571..568494	+	307	117621130	menA	AHA_0533	-	1,4-dihydroxy-2-naphthoate octaprenyltransferase
510	 57.41	0	568547..568816	+	89	117620528	-	AHA_0534	-	hypothetical protein
511	 66.81	0	568896..570293	-	465	117618942	-	AHA_0535	-	propeptide, PepSY amd peptidase M4:PepSY-associated TM helix
512	 65.15	0	570566..570961	+	131	117620644	-	AHA_0536	-	hypothetical protein
513	 58.08	0	571145..571435	-	96	117618024	-	AHA_0537	-	hypothetical protein
514	 66.74	0	571508..572884	-	458	117617930	-	AHA_0538	-	ATP-independent RNA helicase DbpA
515	 55.63	-1	573287..574654	+	455	117619447	-	AHA_0539	-	nucleoside permease NupC
516	 68.66	+1	574747..575247	-	166	117617807	-	AHA_0540	-	putative hydrolase
517	 64.68	0	575340..575894	-	184	117620341	-	AHA_0541	-	cytochrome B
518	 53.33	-1	575943..576212	-	89	117619889	-	AHA_0542	-	hypothetical protein
519	 66.45	0	576334..576786	-	150	117621483	-	AHA_0543	-	YaiI/YqxD family protein
520	 65.65	0	576898..577884	+	328	117620991	zntB	AHA_0544	-	zinc transporter
521	 62.62	0	577894..578412	+	172	117618092	-	AHA_0545	-	hypothetical protein
522	 62.65	0	578455..578703	-	82	117618859	-	AHA_0546	-	hypothetical protein
523	 67.19	0	578767..579342	-	191	117621107	-	AHA_0547	-	molecular chaperones
524	 68.15	+1	579339..581294	-	651	117619534	-	AHA_0548	-	sodium/hydrogen exchanger family protein
525	 62.07	0	581303..581824	-	173	117620651	mtlR	AHA_0549	-	mannitol repressor protein
526	 64.62	0	581933..583201	-	422	117617757	-	AHA_0550	-	mannitol-1-phosphate 5-dehydrogenase
527	 64.38	0	583116..585038	-	640	117618486	-	AHA_0551	-	pts system mannitol-specific eiicba component (eiicba-mtl) (eii-mtl)
528	 67.62	+1	585493..586539	-	348	117619123	-	AHA_0552	-	transport protein
529	 67.63	+1	586561..587286	-	241	117619576	-	AHA_0553	-	TetR family transcriptional regulator
530	 64.64	0	587343..589364	-	673	117619750	rnb	AHA_0554	-	exoribonuclease II
531	 69.33	+1	589465..590364	-	299	117617836	-	AHA_0555	-	chromosome replication initiation inhibitor protein
532	 63.30	0	590632..591255	-	207	117620619	-	AHA_0556	-	autoinducer synthesis protein AhyI
533	 57.63	0	591318..592103	+	261	117618881	ahyR	AHA_0557	-	transcriptional activator protein AhyR
534	 65.06	0	592316..592936	+	206	117619337	-	AHA_0558	-	arginine exporter protein ArgO
535	 62.05	0	593051..595042	+	663	117619728	-	AHA_0559	-	2',3'-cyclic-nucleotide 2'-phosphodiesterase
536	 64.99	0	595108..595584	-	158	117620165	-	AHA_0560	-	surface antigen family protein
537	 64.68	0	595722..596174	-	150	117618419	-	AHA_0561	-	acetyltransferase
538	 67.54	0	596295..596750	-	151	117621048	-	AHA_0562	-	hypothetical protein
539	 66.00	0	596803..598605	-	600	117619368	-	AHA_0563	-	aminopeptidase P
540	 65.62	0	598639..599304	-	221	117618890	-	AHA_0564	-	GntR family transcriptional regulator
541	 60.02	0	599480..601105	-	541	117620524	pckA	AHA_0565	-	phosphoenolpyruvate carboxykinase
542	 60.36	0	601255..602142	-	295	117621508	hslO	AHA_0566	-	33 kDa chaperonin HslO
543	 59.39	0	602248..602838	-	196	117617600	-	AHA_0567	-	heat shock protein 15
544	 60.50	0	602786..603709	+	307	117618034	gspC	AHA_0568	-	general secretion pathway protein C
545	 62.68	0	603731..605764	+	677	117620160	gspD	AHA_0569	-	general secretion pathway protein D
546	 65.80	0	605764..607269	+	501	117618689	gspE	AHA_0570	-	general secretory pathway protein E
547	 63.55	0	607271..608491	+	406	117619869	gspF	AHA_0571	-	general secretion pathway protein F
548	 60.65	0	608607..609038	+	143	117620343	gspG	AHA_0572	-	general secretion pathway protein G
549	 63.59	0	609202..609753	+	183	117620039	gspH	AHA_0573	-	general secretion pathway protein H
550	 63.33	0	609750..610109	+	119	117619700	gspI	AHA_0574	-	general secretion pathway protein I
551	 66.19	0	610178..610807	+	209	117621174	gspJ	AHA_0575	-	general secretion pathway protein J
552	 64.52	0	610897..611922	+	341	117620854	gspK	AHA_0576	-	general secretion pathway protein K
553	 68.69	+1	612042..613226	+	394	117618708	gspL	AHA_0577	-	general secretion pathway protein L
554	 65.04	0	613223..613714	+	163	117619189	gspM	AHA_0578	-	general secretion pathway protein M
555	 67.20	0	613776..614531	+	251	117617568	gspN	AHA_0579	-	type II secretion system protein N
556	 67.32	0	614592..615503	-	303	117618012	-	AHA_0580	-	LuxR family transcriptional regulator
557	 67.06	0	615563..616831	+	422	117621106	tyrS-1	AHA_0581	-	tyrosyl-tRNA synthetase
558	 65.47	0	616925..617593	-	222	117620716	-	AHA_0582	-	HAD family hydrolase
559	 66.31	0	617780..618340	+	186	117621416	nudE	AHA_0583	-	ADP-ribose diphosphatase NudE
560	 66.42	0	618378..619190	+	270	117617489	cysQ-1	AHA_0584	-	3'(2'),5'-bisphosphate nucleotidase
561	 65.17	0	619602..620873	+	423	117618204	-	AHA_0585	-	serine transporter
562	 66.37	0	620947..621285	-	112	117618376	-	AHA_0586	-	protein CsaA
563	 70.25	+1	621370..622122	-	250	117619091	-	AHA_0587	-	AraC family transcriptional regulator
564	 59.57	0	622158..622481	-	107	117619879	metJ	AHA_0588	-	transcriptional repressor protein MetJ
565	 67.44	0	622690..623853	+	387	117620750	metB	AHA_0589	-	O-succinylhomoserine (thiol)-lyase
566	 66.59	0	623853..626321	+	822	117621282	metL	AHA_0590	-	bifunctional aspartate kinase II/homoserine dehydrogenase II
567	 64.69	0	626974..629607	-	877	117621332	ppc	AHA_0591	-	phosphoenolpyruvate carboxylase
568	 64.05	0	629823..630968	-	381	117620010	argE	AHA_0592	-	acetylornithine deacetylase
569	 64.09	0	631237..632244	+	335	117619636	argC	AHA_0593	-	N-acetyl-gamma-glutamyl-phosphate reductase
570	 65.90	0	632268..633047	+	259	117620306	argB	AHA_0594	-	acetylglutamate kinase
571	 61.46	0	632968..633984	+	338	117620979	argF-1	AHA_0595	-	ornithine carbamoyltransferase
572	 62.78	0	634039..635274	+	411	117621222	argG	AHA_0596	-	argininosuccinate synthase
573	 63.92	0	635484..636869	+	461	117617808	argH	AHA_0597	-	argininosuccinate lyase
62.23	MEAN

5.38	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the