IslandPathversion 1.0

IslandPath Analysis: Aeromonas hydrophila subsp. hydrophila ATCC 7966



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 62.23 STD DEV: 5.38
Aeromonas hydrophila subsp. hydrophila ATCC 7966, complete genome - 1..4744448
4122 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
470	 67.89	+1	525968..527935	+	655	117619823	-	AHA_0494	-	TonB-dependent copper receptor
471	 67.14	0	528005..529678	+	557	117620478	-	AHA_0495	-	glycosidase
472	 67.23	0	529733..530263	-	176	117618800	-	AHA_0496	-	Mg2+ transporter
473	 69.16	+1	530291..531733	-	480	117618649	-	AHA_0497	-	hypothetical protein
474	 65.58	0	531920..532378	+	152	117618519	-	AHA_0498	-	Pab N-terminal acetyltransferase
475	 66.26	0	532393..532638	+	81	117618197	-	AHA_0499	-	hypothetical protein
476	 67.47	0	532695..533441	+	248	117617619	-	AHA_0500	-	NADP-dependent l-serine/l-allo-threonine dehydrogenase ydfg
477	 62.62	0	533503..535107	-	534	117621425	-	AHA_0501	-	cytosol non-specific dipeptidase
478	 62.25	0	535441..535893	+	150	117621182	-	AHA_0502	-	hypothetical protein
479	 64.26	0	536092..536673	-	193	117619716	-	AHA_0503	-	hypothetical protein
480	 66.58	0	536885..538060	+	391	117620296	-	AHA_0504	-	NADH-dependent iron-containing alcohol dehydrogenase
481	 65.38	0	538265..538963	-	232	117619429	-	AHA_0505	-	glutathione S-transferase III
482	 65.80	0	539003..540271	-	422	117619400	-	AHA_0506	-	O-acetylhomoserine sulfhydrylase MetY
483	 59.89	0	540428..540604	-	58	117620014	-	AHA_0507	-	hypothetical protein
484	 69.27	+1	540675..542438	+	587	117619619	-	AHA_0508	-	solute-binding family 5 protein
485	 60.61	0	542474..542869	+	131	117618732	-	AHA_0509	-	thioesterase family protein
486	 65.55	0	542901..543614	+	237	117617996	-	AHA_0510	-	hypothetical protein
487	 71.91	+1	543679..544422	-	247	117619265	-	AHA_0511	-	lipase chaperone, putative
488	 65.77	0	544419..545420	-	333	117618653	-	AHA_0512	-	lipase
489	 48.78	-2	545500..545622	-	40	117617828	-	AHA_0513	-	hypothetical protein
490	 68.08	+1	545621..546046	+	141	117617494	-	AHA_0514	-	hypothetical protein
491	 64.55	0	546068..546682	+	204	117621382	-	AHA_0515	-	superoxide dismutase (Mn)
492	 65.89	0	546736..547761	-	341	117618289	-	AHA_0516	-	sanA protein
493	 64.96	0	547928..550675	-	915	117620075	-	AHA_0517	-	collagenase family protein
494	 59.41	0	551179..551550	-	123	117619538	-	AHA_0518	-	putative fimbrial protein
495	 56.54	-1	552789..553331	+	180	117621241	-	AHA_0519	-	fimbrial protein
496	 52.70	-1	553413..553820	+	135	117620684	-	AHA_0520	-	hypothetical protein
497	 59.53	0	553888..556422	+	844	117621351	-	AHA_0521	-	outer membrane usher protein
498	 57.10	0	556433..557164	+	243	117620694	-	AHA_0522	-	fimbrial chaperone protein
499	 42.71	-2	557169..558203	+	344	117618412	-	AHA_0523	-	fimbrial protein
500	 58.51	0	558215..558766	+	183	117617720	-	AHA_0524	-	fimbrial protein
501	 50.29	-2	558769..559452	-	227	117619564	-	AHA_0525	-	hypothetical protein
502	 47.95	-2	559449..560009	-	186	117621270	-	AHA_0526	-	transcriptional regulatory protein, C terminal
503	 68.37	+1	560311..561717	-	468	117619214	menE	AHA_0527	-	O-succinylbenzoate-CoA ligase
504	 67.31	0	561728..562657	-	309	117618896	menC	AHA_0528	-	o-succinylbenzoic acid (OSB) synthetase
505	 63.07	0	562657..563517	-	286	117620309	menB	AHA_0529	-	naphthoate synthase
506	 68.48	+1	563510..564280	-	256	117619877	-	AHA_0530	-	alpha/beta fold family hydrolase
507	 68.57	+1	564270..566000	-	576	117620190	menD	AHA_0531	-	2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylic acid synthase/2-oxoglutarate decarboxylase
508	 68.60	+1	566035..567381	-	448	117620360	menF	AHA_0532	-	menaquinone-specific isochorismate synthase
509	 64.83	0	567571..568494	+	307	117621130	menA	AHA_0533	-	1,4-dihydroxy-2-naphthoate octaprenyltransferase
510	 57.41	0	568547..568816	+	89	117620528	-	AHA_0534	-	hypothetical protein
511	 66.81	0	568896..570293	-	465	117618942	-	AHA_0535	-	propeptide, PepSY amd peptidase M4:PepSY-associated TM helix
512	 65.15	0	570566..570961	+	131	117620644	-	AHA_0536	-	hypothetical protein
513	 58.08	0	571145..571435	-	96	117618024	-	AHA_0537	-	hypothetical protein
514	 66.74	0	571508..572884	-	458	117617930	-	AHA_0538	-	ATP-independent RNA helicase DbpA
515	 55.63	-1	573287..574654	+	455	117619447	-	AHA_0539	-	nucleoside permease NupC
516	 68.66	+1	574747..575247	-	166	117617807	-	AHA_0540	-	putative hydrolase
517	 64.68	0	575340..575894	-	184	117620341	-	AHA_0541	-	cytochrome B
518	 53.33	-1	575943..576212	-	89	117619889	-	AHA_0542	-	hypothetical protein
519	 66.45	0	576334..576786	-	150	117621483	-	AHA_0543	-	YaiI/YqxD family protein
520	 65.65	0	576898..577884	+	328	117620991	zntB	AHA_0544	-	zinc transporter
521	 62.62	0	577894..578412	+	172	117618092	-	AHA_0545	-	hypothetical protein
522	 62.65	0	578455..578703	-	82	117618859	-	AHA_0546	-	hypothetical protein
523	 67.19	0	578767..579342	-	191	117621107	-	AHA_0547	-	molecular chaperones
524	 68.15	+1	579339..581294	-	651	117619534	-	AHA_0548	-	sodium/hydrogen exchanger family protein
525	 62.07	0	581303..581824	-	173	117620651	mtlR	AHA_0549	-	mannitol repressor protein
526	 64.62	0	581933..583201	-	422	117617757	-	AHA_0550	-	mannitol-1-phosphate 5-dehydrogenase
527	 64.38	0	583116..585038	-	640	117618486	-	AHA_0551	-	pts system mannitol-specific eiicba component (eiicba-mtl) (eii-mtl)
528	 67.62	+1	585493..586539	-	348	117619123	-	AHA_0552	-	transport protein
529	 67.63	+1	586561..587286	-	241	117619576	-	AHA_0553	-	TetR family transcriptional regulator
530	 64.64	0	587343..589364	-	673	117619750	rnb	AHA_0554	-	exoribonuclease II
531	 69.33	+1	589465..590364	-	299	117617836	-	AHA_0555	-	chromosome replication initiation inhibitor protein
532	 63.30	0	590632..591255	-	207	117620619	-	AHA_0556	-	autoinducer synthesis protein AhyI
533	 57.63	0	591318..592103	+	261	117618881	ahyR	AHA_0557	-	transcriptional activator protein AhyR
534	 65.06	0	592316..592936	+	206	117619337	-	AHA_0558	-	arginine exporter protein ArgO
535	 62.05	0	593051..595042	+	663	117619728	-	AHA_0559	-	2',3'-cyclic-nucleotide 2'-phosphodiesterase
536	 64.99	0	595108..595584	-	158	117620165	-	AHA_0560	-	surface antigen family protein
537	 64.68	0	595722..596174	-	150	117618419	-	AHA_0561	-	acetyltransferase
538	 67.54	0	596295..596750	-	151	117621048	-	AHA_0562	-	hypothetical protein
539	 66.00	0	596803..598605	-	600	117619368	-	AHA_0563	-	aminopeptidase P
540	 65.62	0	598639..599304	-	221	117618890	-	AHA_0564	-	GntR family transcriptional regulator
541	 60.02	0	599480..601105	-	541	117620524	pckA	AHA_0565	-	phosphoenolpyruvate carboxykinase
542	 60.36	0	601255..602142	-	295	117621508	hslO	AHA_0566	-	33 kDa chaperonin HslO
543	 59.39	0	602248..602838	-	196	117617600	-	AHA_0567	-	heat shock protein 15
544	 60.50	0	602786..603709	+	307	117618034	gspC	AHA_0568	-	general secretion pathway protein C
545	 62.68	0	603731..605764	+	677	117620160	gspD	AHA_0569	-	general secretion pathway protein D
546	 65.80	0	605764..607269	+	501	117618689	gspE	AHA_0570	-	general secretory pathway protein E
547	 63.55	0	607271..608491	+	406	117619869	gspF	AHA_0571	-	general secretion pathway protein F
548	 60.65	0	608607..609038	+	143	117620343	gspG	AHA_0572	-	general secretion pathway protein G
549	 63.59	0	609202..609753	+	183	117620039	gspH	AHA_0573	-	general secretion pathway protein H
550	 63.33	0	609750..610109	+	119	117619700	gspI	AHA_0574	-	general secretion pathway protein I
551	 66.19	0	610178..610807	+	209	117621174	gspJ	AHA_0575	-	general secretion pathway protein J
552	 64.52	0	610897..611922	+	341	117620854	gspK	AHA_0576	-	general secretion pathway protein K
553	 68.69	+1	612042..613226	+	394	117618708	gspL	AHA_0577	-	general secretion pathway protein L
554	 65.04	0	613223..613714	+	163	117619189	gspM	AHA_0578	-	general secretion pathway protein M
555	 67.20	0	613776..614531	+	251	117617568	gspN	AHA_0579	-	type II secretion system protein N
556	 67.32	0	614592..615503	-	303	117618012	-	AHA_0580	-	LuxR family transcriptional regulator
557	 67.06	0	615563..616831	+	422	117621106	tyrS-1	AHA_0581	-	tyrosyl-tRNA synthetase
558	 65.47	0	616925..617593	-	222	117620716	-	AHA_0582	-	HAD family hydrolase
559	 66.31	0	617780..618340	+	186	117621416	nudE	AHA_0583	-	ADP-ribose diphosphatase NudE
560	 66.42	0	618378..619190	+	270	117617489	cysQ-1	AHA_0584	-	3'(2'),5'-bisphosphate nucleotidase
561	 65.17	0	619602..620873	+	423	117618204	-	AHA_0585	-	serine transporter
562	 66.37	0	620947..621285	-	112	117618376	-	AHA_0586	-	protein CsaA
563	 70.25	+1	621370..622122	-	250	117619091	-	AHA_0587	-	AraC family transcriptional regulator
564	 59.57	0	622158..622481	-	107	117619879	metJ	AHA_0588	-	transcriptional repressor protein MetJ
565	 67.44	0	622690..623853	+	387	117620750	metB	AHA_0589	-	O-succinylhomoserine (thiol)-lyase
566	 66.59	0	623853..626321	+	822	117621282	metL	AHA_0590	-	bifunctional aspartate kinase II/homoserine dehydrogenase II
567	 64.69	0	626974..629607	-	877	117621332	ppc	AHA_0591	-	phosphoenolpyruvate carboxylase
568	 64.05	0	629823..630968	-	381	117620010	argE	AHA_0592	-	acetylornithine deacetylase
569	 64.09	0	631237..632244	+	335	117619636	argC	AHA_0593	-	N-acetyl-gamma-glutamyl-phosphate reductase
62.23	MEAN

5.38	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology