IslandPathversion 1.0

IslandPath Analysis: Aeromonas hydrophila subsp. hydrophila ATCC 7966



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 62.23 STD DEV: 5.38
Aeromonas hydrophila subsp. hydrophila ATCC 7966, complete genome - 1..4744448
4122 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
4014	 64.40	0	4623732..4624790	-	352	117621278	-	AHA_4173	-	long-chain-fatty-acid--luciferin-component ligase, Acyl-protein synthase
4015	 68.34	+1	4624790..4626160	-	456	117620690	-	AHA_4174	-	long-chain fatty acid-CoA ligase
4016	 66.27	0	4626160..4626909	-	249	117621307	-	AHA_4175	-	short chain dehydrogenase/reductase family oxidoreductase
4017	 61.11	0	4626909..4627142	-	77	117620717	-	AHA_4176	-	hypothetical protein
4018	 64.06	0	4627139..4627675	-	178	117618361	-	AHA_4177	-	hypothetical protein
4019	 65.37	0	4627840..4628535	+	231	117617781	-	AHA_4178	-	NeuA protein
4020	 68.02	+1	4628525..4629781	+	418	117618544	-	AHA_4179	-	putative FlmD
4021	 65.90	0	4629788..4630834	+	348	117617730	nueB	AHA_4180	-	pseudaminic acid synthase, NeuB
4022	 68.52	+1	4630827..4632122	+	431	117618321	-	AHA_4181	-	hypothetical protein
4023	 65.90	0	4632119..4632379	+	86	117617745	-	AHA_4182	-	hypothetical protein
4024	 67.74	+1	4632415..4632507	+	30	117618974	-	AHA_4184	-	hypothetical protein
4025	 64.39	0	4632497..4633858	-	453	117618317	-	AHA_4183	-	hypothetical protein
4026	 64.94	0	4633855..4634259	-	134	117619031	-	AHA_4185	-	glyoxalase family protein
4027	 67.71	+1	4634249..4635013	-	254	117619581	-	AHA_4186	-	aminoglycoside 3-N-acetyltransferase family protein
4028	 59.56	0	4635010..4635234	-	74	117620204	-	AHA_4187	-	hypothetical protein
4029	 67.02	0	4635227..4636903	-	558	117621329	-	AHA_4188	-	FkbH domain-containing protein
4030	 62.17	0	4637007..4637540	-	177	117621199	-	AHA_4189	-	ATP:cob(I)alamin adenosyltransferase, putative
4031	 62.99	0	4637628..4638770	-	380	117620418	-	AHA_4190	-	hypothetical protein
4032	 64.73	0	4638941..4640074	+	377	117621352	trmA	AHA_4191	-	tRNA (uracil-5-)-methyltransferase
4033	 67.33	0	4640264..4641022	+	252	117617624	-	AHA_4192	-	DNA-binding transcriptional regulator RstA
4034	 69.00	+1	4641139..4642464	+	441	117618142	-	AHA_4193	-	sensor protein RstB
4035	 59.21	0	4642474..4642701	+	75	117617521	-	AHA_4194	-	hypothetical protein
4036	 65.79	0	4642778..4644034	-	418	117617965	-	AHA_4195	-	NADP-dependent malic enzyme
4037	 67.56	0	4644216..4645673	-	485	117621228	-	AHA_4196	-	nucleoside-diphosphate-sugar epimerase
4038	 52.19	-1	4645817..4646044	-	75	117620477	rpmE-2	AHA_4197	-	ribosomal protein L31
4039	 66.35	0	4646180..4648387	+	735	117621138	priA	AHA_4198	-	primosomal protein N'
4040	 66.85	0	4648467..4649567	-	366	117617874	-	AHA_4199	-	hypothetical protein
4041	 64.41	0	4649744..4650850	-	368	117618437	-	AHA_4200	-	outer membrane protein A
4042	 65.81	0	4651098..4652618	-	506	117619375	ilvA	AHA_4201	-	threonine dehydratase
4043	 65.65	0	4652622..4654589	-	655	117617937	ilvD	AHA_4202	-	dihydroxy-acid dehydratase
4044	 64.97	0	4654608..4655552	-	314	117618429	ilvE	AHA_4203	-	branched-chain amino acid aminotransferase
4045	 65.94	0	4655813..4657459	-	548	117618813	ilvB-2	AHA_4204	-	acetolactate synthase 2 catalytic subunit
4046	 50.51	-2	4657546..4657644	-	32	117620726	-	AHA_4205	-	ilvBEDA operon leader peptide
4047	 66.67	0	4657843..4659357	+	504	117619376	-	AHA_4206	-	putative Mg chelatase-like protein
4048	 56.28	-1	4659478..4660392	+	304	117620224	-	AHA_4207	-	acetyltransferase
4049	 63.29	0	4660308..4661342	+	344	117621190	-	AHA_4209	-	phosphate acyltransferase family protein
4050	 70.16	+1	4661288..4661773	-	161	117618409	-	AHA_4208	-	hypothetical protein
4051	 65.13	0	4661871..4662521	-	216	117617825	-	AHA_4210	-	MutT/nudix family protein
4052	 67.77	+1	4662597..4663232	+	211	117620042	-	AHA_4211	-	pyrazinamidase/nicotinamidase
4053	 64.21	0	4663334..4664512	+	392	117620733	pncB	AHA_4212	-	nicotinate phosphoribosyltransferase
4054	 65.60	0	4664637..4665482	+	281	117619638	phnD	AHA_4213	-	phosphonate ABC transporter, periplasmic phosphonate-binding protein
4055	 71.26	+1	4665479..4666240	+	253	117620050	phnC	AHA_4214	-	phosphonate ABC transporter, ATP-binding protein
4056	 68.68	+1	4666240..4667775	+	511	117618474	phnE	AHA_4215	-	phosphonate ABC transporter, permease protein
4057	 57.80	0	4667879..4668487	-	202	117618947	dsbA	AHA_4216	-	thiol:disulfide interchange protein DsbA
4058	 63.84	0	4668625..4669614	-	329	117618985	-	AHA_4217	-	serine/threonine protein kinase
4059	 62.04	0	4669706..4671154	-	482	117619471	ccoG	AHA_4218	-	cytochrome c oxidase accessory protein CcoG
4060	 56.06	-1	4671354..4671617	-	87	117620282	-	AHA_4219	-	hypothetical protein
4061	 65.05	0	4671648..4672763	-	371	117620240	-	AHA_4220	-	GGDEF domain-containing protein
4062	 64.87	0	4672929..4673318	-	129	117621501	cueR	AHA_4221	-	Cu(I)-responsive transcriptional regulator
4063	 67.24	0	4673329..4675749	-	806	117620940	copA	AHA_4222	-	copper-exporting ATPase
4064	 61.01	0	4675930..4676583	-	217	117618078	pyrE	AHA_4223	-	orotate phosphoribosyltransferase
4065	 64.08	0	4676658..4677431	-	257	117617491	rph	AHA_4224	-	ribonuclease PH
4066	 61.57	0	4677521..4678384	+	287	117619264	-	AHA_4225	-	hypothetical protein
4067	 61.05	0	4678551..4679618	+	355	117618394	-	AHA_4227	-	putative ADP-heptose:LPS
4068	 61.02	0	4680633..4681571	-	312	117619890	-	AHA_4228	-	putative heptosyltransferase III
4069	 57.66	0	4681750..4682415	-	221	117620908	-	AHA_4229	-	putative lipooligosaccharide biosynthesis protein LpsA
4070	 52.18	-1	4682412..4683626	-	404	117621311	-	AHA_4230	-	O-antigen polymerase
4071	 59.91	0	4683630..4685480	-	616	117619185	-	AHA_4231	-	WavL
4072	 56.53	-1	4685503..4686459	-	318	117617563	rfaD	AHA_4232	-	ADP-L-glycero-D-manno-heptose-6-epimerase
4073	 59.07	0	4686616..4687260	+	214	117619886	-	AHA_4233	-	TetR family transcriptional regulator
4074	 62.89	0	4687376..4688566	+	396	117621356	kbl	AHA_4234	-	2-amino-3-ketobutyrate coenzyme A ligase
4075	 62.20	0	4688623..4689651	+	342	117618178	tdh	AHA_4235	-	L-threonine 3-dehydrogenase
4076	 60.87	0	4689894..4690307	+	137	117617816	-	AHA_4236	-	cytochrome c5
4077	 59.14	0	4690393..4692678	+	761	117617601	-	AHA_4237	-	GAF domain/GGDEF domain/EAL domain-containing protein
4078	 60.21	0	4692686..4694698	-	670	117618529	rep	AHA_4238	-	ATP-dependent DNA helicase Rep
4079	 64.86	0	4694851..4696071	+	406	117619566	-	AHA_4239	-	cysteine desulfurase
4080	 58.43	0	4696022..4696519	+	165	117619967	-	AHA_4240	-	SufE protein
4081	 60.69	0	4696537..4697373	-	278	117621498	-	AHA_4241	-	ThiF domain-containing protein
4082	 62.47	0	4703283..4704401	-	372	117620883	-	AHA_4247	-	TPR repeat-containing protein
4083	 63.80	0	4704464..4705126	-	220	117619079	tonB-2	AHA_4248	-	outer membrane receptor-mediated transport energizer protein TonB
4084	 62.19	0	4705123..4705524	-	133	117619624	-	AHA_4249	-	biopolymer transport exbD2 protein
4085	 65.16	0	4705521..4706051	-	176	117620189	-	AHA_4250	-	TonB system biopolymer transport component
4086	 67.05	0	4706048..4707355	-	435	117621306	-	AHA_4251	-	TonB system biopolymer transport component
4087	 63.82	0	4707352..4708089	-	245	117617716	-	AHA_4252	-	chromosome segregation ATPase
4088	 56.70	-1	4708323..4708934	+	203	117619760	-	AHA_4253	-	transcriptional activator protein AhyR/asaR
4089	 62.14	0	4708999..4710831	-	610	117618062	glmS	AHA_4254	-	glucosamine--fructose-6-phosphate aminotransferase, isomerizing
4090	 59.95	0	4710888..4711661	-	257	117620685	srlR	AHA_4255	-	glucitol operon repressor
4091	 62.37	0	4711784..4712458	+	224	117617885	-	AHA_4256	-	transcriptional regulatory protein CreB
4092	 64.35	0	4712455..4713876	+	473	117618476	-	AHA_4257	-	sensory histidine kinase CreC
4093	 63.02	0	4713960..4714754	+	264	117618786	-	AHA_4258	-	beta-lactamase
4094	 64.02	0	4714873..4716234	+	453	117619394	-	AHA_4259	-	hypothetical protein
4095	 63.51	0	4716285..4717646	-	453	117619655	glmU	AHA_4260	-	UDP-N-acetylglucosamine pyrophosphorylase/glucosamine-1-phosphate N-acetyltransferase
4096	 59.29	0	4717741..4718160	-	139	117620223	atpC	AHA_4261	-	F0F1 ATP synthase subunit epsilon
4097	 57.96	0	4718188..4719576	-	462	117619208	atpD	AHA_4262	-	F0F1 ATP synthase subunit beta
4098	 53.98	-1	4719610..4720476	-	288	117620323	atpG	AHA_4263	-	ATP synthase F1, gamma subunit
4099	 57.78	0	4720520..4722061	-	513	117619857	atpA	AHA_4264	-	F0F1 ATP synthase subunit alpha
4100	 55.62	-1	4722077..4722610	-	177	117619177	atpH	AHA_4265	-	F0F1 ATP synthase subunit delta
4101	 53.72	-1	4722624..4723094	-	156	117618536	atpF	AHA_4266	-	F0F1 ATP synthase subunit B
4102	 55.56	-1	4723147..4723389	-	80	117619430	atpE	AHA_4267	-	F0F1 ATP synthase subunit C
4103	 52.23	-1	4723448..4724230	-	260	117618969	atpB	AHA_4268	-	F0F1 ATP synthase subunit A
4104	 54.71	-1	4724239..4724631	-	130	117618226	atpI	AHA_4269	-	ATP synthase F0, I subunit
4105	 61.94	0	4724840..4725748	-	302	117617774	-	AHA_4270	-	chromosome partitioning protein ParB
4106	 61.44	0	4725745..4726548	-	267	117619690	-	AHA_4271	-	Soj protein
4107	 59.38	0	4726557..4727201	-	214	117620993	gidB	AHA_4272	-	methyltransferase GidB
4108	 62.75	0	4727222..4729111	-	629	117619063	gidA	AHA_4273	-	tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
4109	 57.80	0	4729621..4730184	-	187	117618578	-	AHA_4274	-	protein MioC
4110	 61.60	0	4730433..4732562	+	709	117620411	-	AHA_4275	-	ferrichrome receptor
4111	 63.95	0	4732642..4734300	+	552	117619977	-	AHA_4276	-	multidrug transporter membrane component/ATP-binding component
4112	 65.49	0	4734323..4735087	+	254	117621312	-	AHA_4277	-	ferrichrome ABC transporter, ATP-binding protein
4113	 67.42	0	4735106..4736032	+	308	117620874	-	AHA_4278	-	ferrichrome-binding periplasmic protein
62.23	MEAN

5.38	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.