IslandPathversion 1.0

IslandPath Analysis: Aeromonas hydrophila subsp. hydrophila ATCC 7966



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 62.23 STD DEV: 5.38
Aeromonas hydrophila subsp. hydrophila ATCC 7966, complete genome - 1..4744448
4122 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
3963	 68.66	+1	4567664..4569070	+	468	117619192	-	AHA_4121	-	siroheme synthase
3964	 65.79	0	4569143..4570627	+	494	117618341	mgtE-2	AHA_4122	-	magnesium transporter
3965	 63.05	0	4570685..4572538	-	617	117618167	-	AHA_4123	-	methyl-accepting chemotaxis protein
3966	 60.49	0	4572685..4573170	+	161	117621554	rraA-2	AHA_4124	-	ribonuclease activity regulator protein RraA
3967	 59.85	0	4573439..4574113	-	224	117617739	-	AHA_4125	-	hypothetical protein
3968	 63.89	0	4574246..4574569	-	107	117620079	-	AHA_4126	-	hypothetical protein
3969	 66.53	0	4574544..4575971	-	475	117620918	-	AHA_4127	-	YdiU family protein
3970	 61.33	0	4576075..4576374	+	99	117619187	-	AHA_4128	-	cytochrome c-552
3971	 64.05	0	4576443..4578278	-	611	117621322	recQ	AHA_4129	-	ATP-dependent DNA helicase RecQ
3972	 61.40	0	4578421..4578876	+	151	117618824	-	AHA_4130	-	thioesterase (4HBT) superfamily protein
3973	 54.36	-1	4579001..4579528	+	175	117619296	-	AHA_4131	-	hypothetical protein
3974	 64.70	0	4580082..4580792	-	236	117619261	-	AHA_4133	-	mosc domain-containing protein
3975	 63.11	0	4580838..4581680	-	280	117619602	potI	AHA_4134	-	putrescine ABC transporter, permease protein PotI
3976	 60.24	0	4581677..4582579	-	300	117620023	potH	AHA_4135	-	putrescine ABC transporter, permease protein PotH
3977	 61.56	0	4582579..4583733	-	384	117620980	-	AHA_4136	-	putrescine transport ATP-binding protein PotG
3978	 60.77	0	4583809..4584894	-	361	117621460	potD	AHA_4137	-	spermidine/putrescine ABC transporter, periplasmic spermidine/putrescine-binding protein
3979	 58.47	0	4585012..4586109	-	365	117617823	potF	AHA_4138	-	putrescine ABC transporter, periplasmic putrescine-binding protein
3980	 63.36	0	4586164..4587525	-	453	117619456	-	AHA_4139	-	putative aminotransferase
3981	 63.29	0	4587713..4589044	-	443	117620680	-	AHA_4140	-	glutamine synthetase
3982	 57.36	0	4589513..4589899	+	128	117618292	-	AHA_4141	-	putative RNA polymerase-binding protein DksA
3983	 59.56	0	4590070..4590927	+	285	117617945	-	AHA_4142	-	hypothetical protein
3984	 64.43	0	4590979..4591425	+	148	117619467	-	AHA_4143	-	hypothetical protein
3985	 64.38	0	4591447..4591926	+	159	117620117	-	AHA_4144	-	CreA
3986	 62.83	0	4592004..4592993	+	329	117619573	-	AHA_4145	-	D-lactate dehydrogenase
3987	 67.83	+1	4593085..4594464	+	459	117619633	-	AHA_4146	-	putative chaperone
3988	 63.52	0	4594436..4595038	+	200	117621206	-	AHA_4147	-	heat shock protein HslJ
3989	 62.66	0	4595109..4595957	+	282	117620770	-	AHA_4148	-	hypothetical protein
3990	 64.63	0	4596071..4597792	+	573	117618904	-	AHA_4149	-	maltodextrin glucosidase
3991	 57.61	0	4598015..4599019	+	334	117619495	-	AHA_4150	-	lipopolysaccharide O-Ag biosynthesis protein FlmA
3992	 56.44	-1	4599016..4600149	+	377	117618895	flmB	AHA_4151	-	lipopolysaccharide O-Ag biosynthesis protein FlmB
3993	 51.19	-2	4600278..4601033	-	251	117618315	-	AHA_4152	-	transferase, putative
3994	 52.58	-1	4601040..4601678	-	212	117620144	-	AHA_4153	-	hypothetical protein
3995	 51.69	-1	4601675..4604071	-	798	117620556	-	AHA_4154	-	hypothetical protein
3996	 52.42	-1	4604068..4604790	-	240	117619686	-	AHA_4155	-	methionyl-tRNA formyltransferase-like protein
3997	 48.26	-2	4604787..4605362	-	191	117621125	-	AHA_4156	-	hypothetical protein
3998	 43.68	-2	4605362..4605883	-	173	117620151	-	AHA_4157	-	adenylyl-sulfate kinase
3999	 35.32	-2	4605931..4606887	-	318	117620557	-	AHA_4158	-	hypothetical protein
4000	 34.18	-2	4606989..4608884	-	631	117619932	-	AHA_4159	-	hypothetical protein
4001	 33.52	-2	4608995..4610074	-	359	117619041	-	AHA_4160	-	hypothetical protein
4002	 37.69	-2	4610187..4610966	-	259	117619944	-	AHA_4161	-	cephalosporin hydroxylase
4003	 46.52	-2	4610986..4612092	-	368	117620016	-	AHA_4162	-	spore coat polysaccharide biosynthesis protein SpsC
4004	 48.61	-2	4612089..4613312	-	407	117619297	-	AHA_4163	-	hypothetical protein
4005	 48.94	-2	4613309..4613872	-	187	117621524	rfbC-2	AHA_4164	-	dTDP-4-dehydrorhamnose 3,5-epimerase
4006	 53.65	-1	4613869..4614936	-	355	117620829	rfbG	AHA_4165	-	CDP-glucose 4,6-dehydratase
4007	 45.22	-2	4614933..4615706	-	257	117620191	rfbF	AHA_4166	-	glucose-1-phosphate cytidylyltransferase
4008	 35.01	-2	4615748..4616581	-	277	117619181	-	AHA_4167	-	glycosyl transferase, group 2 family protein
4009	 38.16	-2	4616605..4617909	-	434	117618739	-	AHA_4168	-	UDP-N-acetyl-D-mannosamine dehydrogenase
4010	 35.44	-2	4617943..4619079	-	378	117618046	-	AHA_4169	-	glycosyl transferase, group 1 family protein
4011	 37.33	-2	4620296..4621396	-	366	117617842	-	AHA_4170	-	glycosyl transferase family protein
4012	 47.75	-2	4621433..4622389	-	318	117620068	-	AHA_4171	-	putative glycosyltransferase
4013	 66.67	0	4622548..4623735	-	395	117619522	-	AHA_4172	-	putative acyl-CoA reductase LuxC
4014	 64.40	0	4623732..4624790	-	352	117621278	-	AHA_4173	-	long-chain-fatty-acid--luciferin-component ligase, Acyl-protein synthase
4015	 68.34	+1	4624790..4626160	-	456	117620690	-	AHA_4174	-	long-chain fatty acid-CoA ligase
4016	 66.27	0	4626160..4626909	-	249	117621307	-	AHA_4175	-	short chain dehydrogenase/reductase family oxidoreductase
4017	 61.11	0	4626909..4627142	-	77	117620717	-	AHA_4176	-	hypothetical protein
4018	 64.06	0	4627139..4627675	-	178	117618361	-	AHA_4177	-	hypothetical protein
4019	 65.37	0	4627840..4628535	+	231	117617781	-	AHA_4178	-	NeuA protein
4020	 68.02	+1	4628525..4629781	+	418	117618544	-	AHA_4179	-	putative FlmD
4021	 65.90	0	4629788..4630834	+	348	117617730	nueB	AHA_4180	-	pseudaminic acid synthase, NeuB
4022	 68.52	+1	4630827..4632122	+	431	117618321	-	AHA_4181	-	hypothetical protein
4023	 65.90	0	4632119..4632379	+	86	117617745	-	AHA_4182	-	hypothetical protein
4024	 67.74	+1	4632415..4632507	+	30	117618974	-	AHA_4184	-	hypothetical protein
4025	 64.39	0	4632497..4633858	-	453	117618317	-	AHA_4183	-	hypothetical protein
4026	 64.94	0	4633855..4634259	-	134	117619031	-	AHA_4185	-	glyoxalase family protein
4027	 67.71	+1	4634249..4635013	-	254	117619581	-	AHA_4186	-	aminoglycoside 3-N-acetyltransferase family protein
4028	 59.56	0	4635010..4635234	-	74	117620204	-	AHA_4187	-	hypothetical protein
4029	 67.02	0	4635227..4636903	-	558	117621329	-	AHA_4188	-	FkbH domain-containing protein
4030	 62.17	0	4637007..4637540	-	177	117621199	-	AHA_4189	-	ATP:cob(I)alamin adenosyltransferase, putative
4031	 62.99	0	4637628..4638770	-	380	117620418	-	AHA_4190	-	hypothetical protein
4032	 64.73	0	4638941..4640074	+	377	117621352	trmA	AHA_4191	-	tRNA (uracil-5-)-methyltransferase
4033	 67.33	0	4640264..4641022	+	252	117617624	-	AHA_4192	-	DNA-binding transcriptional regulator RstA
4034	 69.00	+1	4641139..4642464	+	441	117618142	-	AHA_4193	-	sensor protein RstB
4035	 59.21	0	4642474..4642701	+	75	117617521	-	AHA_4194	-	hypothetical protein
4036	 65.79	0	4642778..4644034	-	418	117617965	-	AHA_4195	-	NADP-dependent malic enzyme
4037	 67.56	0	4644216..4645673	-	485	117621228	-	AHA_4196	-	nucleoside-diphosphate-sugar epimerase
4038	 52.19	-1	4645817..4646044	-	75	117620477	rpmE-2	AHA_4197	-	ribosomal protein L31
4039	 66.35	0	4646180..4648387	+	735	117621138	priA	AHA_4198	-	primosomal protein N'
4040	 66.85	0	4648467..4649567	-	366	117617874	-	AHA_4199	-	hypothetical protein
4041	 64.41	0	4649744..4650850	-	368	117618437	-	AHA_4200	-	outer membrane protein A
4042	 65.81	0	4651098..4652618	-	506	117619375	ilvA	AHA_4201	-	threonine dehydratase
4043	 65.65	0	4652622..4654589	-	655	117617937	ilvD	AHA_4202	-	dihydroxy-acid dehydratase
4044	 64.97	0	4654608..4655552	-	314	117618429	ilvE	AHA_4203	-	branched-chain amino acid aminotransferase
4045	 65.94	0	4655813..4657459	-	548	117618813	ilvB-2	AHA_4204	-	acetolactate synthase 2 catalytic subunit
4046	 50.51	-2	4657546..4657644	-	32	117620726	-	AHA_4205	-	ilvBEDA operon leader peptide
4047	 66.67	0	4657843..4659357	+	504	117619376	-	AHA_4206	-	putative Mg chelatase-like protein
4048	 56.28	-1	4659478..4660392	+	304	117620224	-	AHA_4207	-	acetyltransferase
4049	 63.29	0	4660308..4661342	+	344	117621190	-	AHA_4209	-	phosphate acyltransferase family protein
4050	 70.16	+1	4661288..4661773	-	161	117618409	-	AHA_4208	-	hypothetical protein
4051	 65.13	0	4661871..4662521	-	216	117617825	-	AHA_4210	-	MutT/nudix family protein
4052	 67.77	+1	4662597..4663232	+	211	117620042	-	AHA_4211	-	pyrazinamidase/nicotinamidase
4053	 64.21	0	4663334..4664512	+	392	117620733	pncB	AHA_4212	-	nicotinate phosphoribosyltransferase
4054	 65.60	0	4664637..4665482	+	281	117619638	phnD	AHA_4213	-	phosphonate ABC transporter, periplasmic phosphonate-binding protein
4055	 71.26	+1	4665479..4666240	+	253	117620050	phnC	AHA_4214	-	phosphonate ABC transporter, ATP-binding protein
4056	 68.68	+1	4666240..4667775	+	511	117618474	phnE	AHA_4215	-	phosphonate ABC transporter, permease protein
4057	 57.80	0	4667879..4668487	-	202	117618947	dsbA	AHA_4216	-	thiol:disulfide interchange protein DsbA
4058	 63.84	0	4668625..4669614	-	329	117618985	-	AHA_4217	-	serine/threonine protein kinase
4059	 62.04	0	4669706..4671154	-	482	117619471	ccoG	AHA_4218	-	cytochrome c oxidase accessory protein CcoG
4060	 56.06	-1	4671354..4671617	-	87	117620282	-	AHA_4219	-	hypothetical protein
4061	 65.05	0	4671648..4672763	-	371	117620240	-	AHA_4220	-	GGDEF domain-containing protein
4062	 64.87	0	4672929..4673318	-	129	117621501	cueR	AHA_4221	-	Cu(I)-responsive transcriptional regulator
62.23	MEAN

5.38	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.