IslandPathversion 1.0

IslandPath Analysis: Aeromonas hydrophila subsp. hydrophila ATCC 7966



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 62.23 STD DEV: 5.38
Aeromonas hydrophila subsp. hydrophila ATCC 7966, complete genome - 1..4744448
4122 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
3646	 64.18	0	4208120..4208521	+	133	117619114	-	AHA_3780	-	murein hydrolase exporter
3647	 65.36	0	4208514..4209203	+	229	117619480	-	AHA_3781	-	LrgB family protein
3648	 65.68	0	4209300..4210214	+	304	117618877	-	AHA_3782	-	hypothetical protein
3649	 64.05	0	4210291..4211169	+	292	117618254	-	AHA_3783	-	hypothetical protein
3650	 68.20	+1	4211256..4212494	-	412	117619276	-	AHA_3784	-	multifunctional CCA protein
3651	 66.73	0	4212835..4214412	+	525	117621302	exeA	AHA_3785	-	general secretion pathway protein A
3652	 70.03	+1	4214412..4215095	+	227	117620761	-	AHA_3786	-	general secretion pathway protein B
3653	 66.67	0	4215293..4216354	+	353	117620493	mutY	AHA_3787	-	A/G-specific adenine glycosylase
3654	 53.48	-1	4216363..4216635	+	90	117619597	-	AHA_3788	-	hypothetical protein
3655	 64.32	0	4216639..4217829	+	396	117621296	-	AHA_3789	-	membrane-bound lytic murein transglycosylase C
3656	 61.42	0	4217896..4218276	-	126	117620765	-	AHA_3790	-	OB-fold nucleic acid binding domain-containing protein
3657	 61.85	0	4218430..4219530	+	366	117617463	-	AHA_3791	-	phosphatidylcholine-sterol acyltransferase
3658	 63.25	0	4219591..4220292	-	233	117621240	-	AHA_3792	-	hypothetical protein
3659	 62.98	0	4220559..4221617	+	352	117619103	-	AHA_3793	-	outer membrane protein A
3660	 67.19	0	4221703..4222272	-	189	117618513	-	AHA_3794	-	hypothetical protein
3661	 63.08	0	4222272..4223918	-	548	117620228	-	AHA_3795	-	paraquat-inducible protein B
3662	 62.22	0	4223911..4225191	-	426	117619635	-	AHA_3796	-	paraquat-inducible protein A
3663	 61.98	0	4225369..4225731	+	120	117618943	-	AHA_3797	-	Hfq protein
3664	 63.60	0	4225871..4226554	-	227	117619462	-	AHA_3798	-	CbbY family protein
3665	 65.31	0	4226527..4227630	-	367	117619577	-	AHA_3799	-	sensory box/GGDEF family protein, putative
3666	 61.67	0	4227635..4229275	-	546	117620127	-	AHA_3800	-	GGDEF family protein
3667	 64.83	0	4229370..4230242	-	290	117619615	dapA-2	AHA_3801	-	dihydrodipicolinate synthase
3668	 62.97	0	4230523..4231551	+	342	117620051	-	AHA_3802	-	ribosomal RNA small subunit methyltransferase C (rRNA(guanine-N(2)-)-methyltransferase)
3669	 60.67	0	4231701..4232918	+	405	117620757	glgC	AHA_3803	-	glucose-1-phosphate adenylyltransferase
3670	 61.81	0	4232908..4234368	+	486	117621301	glgA	AHA_3804	-	glycogen synthase
3671	 52.54	-1	4235158..4235511	+	117	117619585	-	AHA_3811	-	hypothetical protein
3672	 62.38	0	4235506..4235715	-	69	117620030	-	AHA_3810	-	hypothetical protein
3673	 62.62	0	4236015..4237424	+	469	117620744	nhaC	AHA_3812	-	Na+/H+ antiporter NhaC
3674	 68.94	+1	4237530..4238453	+	307	117621227	-	AHA_3813	-	transcriptional regulator
3675	 64.49	0	4238653..4239798	+	381	117617776	-	AHA_3814	-	ABC transporter, periplasmic substrate-binding protein
3676	 66.17	0	4239871..4240884	+	337	117618244	-	AHA_3815	-	ABC transporter, ATP-binding protein
3677	 65.33	0	4240881..4241849	+	322	117618184	-	AHA_3816	-	ABC transporter, permease protein
3678	 64.83	0	4241948..4242763	+	271	117617613	-	AHA_3817	-	ABC transporter, permease protein
3679	 67.30	0	4242793..4244223	+	476	117621075	-	AHA_3818	-	gamma-aminobutyraldehyde dehydrogenase
3680	 62.16	0	4244380..4244712	-	110	117620948	-	AHA_3819	-	hypothetical protein
3681	 68.38	+1	4245048..4245923	-	291	117618447	-	AHA_3820	-	drug/metabolite exporter family transporter
3682	 65.36	0	4246018..4246476	+	152	117617711	-	AHA_3821	-	AsnC family transcriptional regulator
3683	 65.35	0	4246595..4247200	-	201	117619360	-	AHA_3822	-	maltose O-acetyltransferase
3684	 62.76	0	4247204..4248865	-	553	117619150	treC	AHA_3823	-	alpha,alpha-phosphotrehalase
3685	 62.98	0	4248934..4250454	-	506	117618690	treP	AHA_3824	-	trehalose(maltose)-specific PTS system components IIBC
3686	 66.77	0	4250556..4251503	-	315	117620069	treR	AHA_3825	-	trehalose repressor
3687	 65.93	0	4251714..4252664	+	316	117617777	-	AHA_3826	-	transporter
3688	 63.59	0	4252732..4252926	+	64	117620395	-	AHA_3827	-	mercuric reductase (Hg(II) reductase)
3689	 64.59	0	4253059..4254117	+	352	117618845	-	AHA_3828	-	L-asparaginase, type II
3690	 63.58	0	4254208..4255341	-	377	117620155	-	AHA_3829	-	putative Ca2+/Na+ antiporter
3691	 59.52	0	4255585..4256172	+	195	117619713	-	AHA_3830	-	hypothetical protein
3692	 61.88	0	4256233..4256796	-	187	117621268	mgsA	AHA_3831	-	methylglyoxal synthase
3693	 65.53	0	4256780..4258885	-	701	117621447	-	AHA_3832	-	hypothetical protein
3694	 58.54	0	4259088..4259567	-	159	117618962	bfr	AHA_3833	-	bacterioferritin
3695	 54.79	-1	4259710..4260012	-	100	117618229	-	AHA_3834	-	hypothetical protein
3696	 62.18	0	4260054..4260365	+	103	117620649	-	AHA_3835	-	transcriptional activator HlyU
3697	 68.17	+1	4260362..4262428	+	688	117620721	-	AHA_3837	-	hypothetical protein
3698	 68.33	+1	4262415..4263134	-	239	117619253	-	AHA_3836	-	short chain dehydrogenase/reductase family oxidoreductase
3699	 61.05	0	4263341..4264354	+	337	117621297	-	AHA_3838	-	chemotaxis protein CheV
3700	 65.76	0	4264415..4265854	-	479	117618250	-	AHA_3839	-	transporter gate domain-containing protein
3701	 62.60	0	4265931..4266446	-	171	117621019	-	AHA_3840	-	hypothetical protein
3702	 61.31	0	4266919..4268262	-	447	117619365	-	AHA_3841	-	Ion channel family protein
3703	 61.72	0	4268972..4269739	-	255	117617622	-	AHA_3846	-	hypothetical protein
3704	 61.29	0	4269811..4270182	+	123	117620045	folB	AHA_3847	-	dihydroneopterin aldolase
3705	 66.27	0	4270182..4270691	+	169	117618693	folK-2	AHA_3848	-	2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase
3706	 66.67	0	4270813..4271295	+	160	117618198	-	AHA_3849	-	DNA-binding protein
3707	 65.80	0	4271305..4272693	-	462	117618058	-	AHA_3850	-	major facilitator transporter
3708	 65.06	0	4272755..4273873	-	372	117618352	-	AHA_3851	-	cobalamin synthesis protein/P47K family protein
3709	 64.73	0	4273892..4275286	-	464	117621252	-	AHA_3852	-	FAD binding domain-containing protein
3710	 64.89	0	4275410..4276027	-	205	117619529	-	AHA_3853	-	amino acid transporter LysE
3711	 70.63	+1	4276104..4277012	+	302	117620392	-	AHA_3854	-	HTH-type transcriptional regulator TrpI
3712	 64.89	0	4277017..4278591	-	524	117618668	-	AHA_3855	-	EAL domain-containing protein
3713	 62.86	0	4278756..4281353	-	865	162139475	acnB	AHA_3856	-	bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase
3714	 63.92	0	4281582..4283840	-	752	117620893	-	AHA_3857	-	serine protease
3715	 65.90	0	4284039..4285985	+	648	117619359	-	AHA_3858	-	methyl-accepting chemotaxis protein
3716	 63.76	0	4286011..4287765	+	584	117617631	-	AHA_3859	-	hemolysin secretion protein
3717	 65.57	0	4287909..4288091	+	60	117619286	-	AHA_3860	-	hypothetical protein
3718	 59.73	0	4288159..4289586	-	475	117617915	lpdA	AHA_3861	-	dihydrolipoamide dehydrogenase
3719	 62.34	0	4289736..4291631	-	631	117618366	aceF	AHA_3862	-	pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase
3720	 60.39	0	4291745..4294405	-	886	117620590	aceE	AHA_3863	-	pyruvate dehydrogenase subunit E1
3721	 60.39	0	4294485..4295249	-	254	117621112	pdhR	AHA_3864	-	transcriptional regulator PdhR
3722	 59.34	0	4295525..4296097	-	190	117619699	-	AHA_3865	-	N-acetyl-anhydromuranmyl-L-alanine amidase
3723	 61.74	0	4296188..4296715	+	175	117621109	-	AHA_3866	-	hypothetical protein
3724	 61.31	0	4296721..4297578	+	285	117619520	nadC	AHA_3867	-	nicotinate-nucleotide pyrophosphorylase
3725	 48.03	-2	4297901..4298383	+	160	117618846	-	AHA_3868	-	pilin family protein
3726	 57.28	0	4298377..4300092	+	571	117618626	pilB	AHA_3869	-	type IV-A pilus assembly ATPase PilB
3727	 58.62	0	4300208..4301449	+	413	117618056	pilC	AHA_3870	-	type 4 fimbrial assembly protein PilC
3728	 60.94	0	4301472..4302344	+	290	117617611	gspO	AHA_3871	-	prepilin peptidase
3729	 62.76	0	4302364..4302978	+	204	117621396	coaE	AHA_3872	-	dephospho-CoA kinase
3730	 61.09	0	4302950..4303738	+	262	117620794	-	AHA_3873	-	hypothetical protein
3731	 61.54	0	4303748..4303942	+	64	117620426	-	AHA_3874	-	hypothetical protein
3732	 62.35	0	4304003..4304419	-	138	117621149	-	AHA_3875	-	mutator MutT protein
3733	 64.22	0	4304425..4305609	-	394	117618573	-	AHA_3876	-	TPR repeat-containing protein
3734	 60.68	0	4305684..4308404	-	906	117618932	secA	AHA_3877	-	preprotein translocase, SecA subunit
3735	 59.38	0	4308464..4309369	-	301	117618478	-	AHA_3878	-	M23/M37 peptidase domain-containing protein
3736	 56.06	-1	4309510..4310433	-	307	117617758	lpxC	AHA_3879	-	UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase
3737	 60.68	0	4310535..4311686	-	383	117618768	ftsZ	AHA_3880	-	cell division protein FtsZ
3738	 60.48	0	4311727..4312986	-	419	117618704	ftsA	AHA_3881	-	cell division protein FtsA
3739	 58.48	0	4312967..4313650	-	227	117618438	ftsQ	AHA_3882	-	cell division protein FtsQ
3740	 64.74	0	4313817..4315271	-	484	117618995	murC	AHA_3883	-	UDP-N-acetylmuramate--alanine ligase
3741	 67.59	0	4315268..4316353	-	361	117621231	murG	AHA_3884	-	undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase
3742	 63.85	0	4316353..4317489	-	378	117617598	ftsW	AHA_3885	-	cell division protein FtsW
3743	 66.51	0	4317531..4318814	-	427	117619646	murD	AHA_3886	-	UDP-N-acetylmuramoylalanine--D-glutamate ligase
3744	 61.40	0	4318818..4319900	-	360	117620237	mraY	AHA_3887	-	phospho-N-acetylmuramoyl-pentapeptide-transferase
3745	 64.31	0	4319894..4321249	-	451	117619374	murF	AHA_3888	-	UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
62.23	MEAN

5.38	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.