IslandPathversion 1.0

IslandPath Analysis: Aeromonas hydrophila subsp. hydrophila ATCC 7966



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 62.23 STD DEV: 5.38
Aeromonas hydrophila subsp. hydrophila ATCC 7966, complete genome - 1..4744448
4122 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
3593	 58.96	0	4160600..4161274	-	224	117620759	-	AHA_3726	-	periplasmic protein
3594	 62.95	0	4161360..4162274	-	304	117620049	znuA	AHA_3728	-	zinc ABC transporter, periplasmic zinc-binding protein
3595	 63.01	0	4162369..4163133	+	254	117619620	znuC	AHA_3729	-	high-affinity zinc uptake ABC transporter, ATP-binding protein ZnuC
3596	 63.97	0	4163155..4163934	+	259	117618931	znuB	AHA_3730	-	zinc uptake ABC transporter, permease protein ZnuB
3597	 64.81	0	4164025..4164942	-	305	117620291	-	AHA_3731	-	LysR family transcriptional regulator
3598	 65.62	0	4165034..4165891	+	285	117618577	-	AHA_3732	-	drug/metabolite exporter family protein
3599	 64.26	0	4165902..4166483	-	193	117621213	-	AHA_3733	-	uracil-DNA glycosylase
3600	 64.56	0	4166586..4167488	+	300	117620208	rarD-2	AHA_3735	-	RarD protein
3601	 61.50	0	4167470..4168204	-	244	117619532	-	AHA_3734	-	hypothetical protein
3602	 66.42	0	4168249..4168659	+	136	117619010	-	AHA_3736	-	endo/excinuclease domain-containing protein
3603	 60.73	0	4168744..4168962	-	72	117619443	pspG	AHA_3737	-	phage shock protein G
3604	 66.18	0	4169005..4169211	-	68	117617770	-	AHA_3738	-	hypothetical protein
3605	 64.25	0	4169214..4169876	-	220	117618223	-	AHA_3739	-	phage shock protein A
3606	 65.02	0	4170084..4170812	-	242	117621245	plsC	AHA_3740	-	1-acyl-sn-glycerol-3-phosphate acyltransferase
3607	 67.45	0	4170989..4171369	+	126	117617573	-	AHA_3741	-	membrane protein, suppressor for copper-sensitivity A
3608	 67.90	+1	4171353..4173467	+	704	117619399	-	AHA_3742	-	membrane protein, suppressor for copper-sensitivity B
3609	 65.74	0	4173478..4174233	+	251	117618988	-	AHA_3743	-	secreted protein, suppressor for copper-sensitivity C
3610	 67.32	0	4174245..4174397	+	50	117618252	-	AHA_3744	-	hypothetical protein
3611	 68.64	+1	4174473..4174928	+	151	117617795	-	AHA_3745	-	suppressor for copper-sensitivity D
3612	 57.14	0	4175115..4175492	+	125	117621093	-	AHA_3746	-	DnaJ domain-containing protein
3613	 61.69	0	4175516..4176058	+	180	117618611	-	AHA_3747	-	hypothetical protein
3614	 56.77	-1	4176071..4176838	+	255	117620454	-	AHA_3748	-	hypothetical protein
3615	 63.68	0	4176850..4177752	+	300	117620867	-	AHA_3749	-	hypothetical protein
3616	 58.16	0	4177959..4178240	+	93	117618329	-	AHA_3750	-	hypothetical protein
3617	 59.20	0	4178299..4178673	+	124	117620139	-	AHA_3751	-	hypothetical protein
3618	 50.84	-2	4178866..4180110	-	414	117620785	-	AHA_3752	-	multidrug transporter-like protein
3619	 50.06	-2	4180198..4181106	+	302	117619067	-	AHA_3753	-	LysR family transcriptional regulator
3620	 44.51	-2	4181200..4182282	-	360	117618323	-	AHA_3754	-	hypothetical protein
3621	 63.83	0	4182339..4184633	-	764	117619627	parC	AHA_3755	-	DNA topoisomerase IV subunit A
3622	 64.08	0	4184717..4186612	-	631	117618295	parE	AHA_3756	-	DNA topoisomerase IV subunit B
3623	 66.77	0	4186727..4188736	-	669	117618909	-	AHA_3757	-	transport protein YdhK
3624	 65.86	0	4188738..4189604	-	288	117620113	-	AHA_3758	-	HlyD family secretion protein
3625	 61.11	0	4189597..4189866	-	89	117620708	-	AHA_3759	-	hypothetical protein
3626	 64.68	0	4189933..4190334	-	133	117619165	-	AHA_3760	-	glutathione-dependent formaldehyde-activating, GFA
3627	 66.19	0	4190372..4190995	-	207	117619595	-	AHA_3761	-	mutator MutT protein
3628	 65.65	0	4190998..4191585	-	195	117620949	-	AHA_3762	-	esterase YqiA
3629	 65.69	0	4191595..4192413	-	272	117621551	-	AHA_3763	-	Icc protein
3630	 54.14	-1	4192440..4192886	-	148	117619765	-	AHA_3764	-	phosphohydrolase
3631	 62.87	0	4192888..4193598	-	236	117620429	-	AHA_3765	-	hypothetical protein
3632	 57.52	0	4193783..4195159	+	458	117620693	-	AHA_3766	-	HAS ABC exporter outer membrane component
3633	 66.11	0	4195263..4196690	-	475	117618061	hldE	AHA_3767	-	bifunctional heptose 7-phosphate kinase/heptose 1-phosphate adenyltransferase
3634	 64.18	0	4196996..4197919	+	307	117619813	htrB	AHA_3768	-	lipid A biosynthesis lauroyl acyltransferase
3635	 63.89	0	4198072..4198539	+	155	117621331	-	AHA_3769	-	TonB domain-containing protein
3636	 62.29	0	4198649..4199608	-	319	117619283	-	AHA_3770	-	adenylate cyclase
3637	 54.88	-1	4199773..4200459	+	228	117618887	-	AHA_3771	-	hypothetical protein
3638	 63.74	0	4200483..4201748	+	421	117618270	-	AHA_3772	-	Pho4 family protein
3639	 63.64	0	4201896..4202357	+	153	117617827	-	AHA_3773	-	ybaK/ebsC protein
3640	 66.75	0	4202397..4203659	-	420	117617528	-	AHA_3774	-	hypothetical protein
3641	 67.77	+1	4203884..4204606	-	240	117617835	-	AHA_3775	-	ribosomal protein serine acetyltransferase
3642	 66.21	0	4204596..4205033	-	145	117620513	-	AHA_3776	-	hypothetical protein
3643	 66.67	0	4205051..4205518	-	155	117620830	-	AHA_3777	-	OsmC/Ohr family protein
3644	 71.89	+1	4205647..4207083	+	478	117619323	-	AHA_3778	-	GntR family transcriptional regulator
3645	 68.01	+1	4207099..4207992	-	297	117619976	-	AHA_3779	-	LysR family transcriptional regulator
3646	 64.18	0	4208120..4208521	+	133	117619114	-	AHA_3780	-	murein hydrolase exporter
3647	 65.36	0	4208514..4209203	+	229	117619480	-	AHA_3781	-	LrgB family protein
3648	 65.68	0	4209300..4210214	+	304	117618877	-	AHA_3782	-	hypothetical protein
3649	 64.05	0	4210291..4211169	+	292	117618254	-	AHA_3783	-	hypothetical protein
3650	 68.20	+1	4211256..4212494	-	412	117619276	-	AHA_3784	-	multifunctional CCA protein
3651	 66.73	0	4212835..4214412	+	525	117621302	exeA	AHA_3785	-	general secretion pathway protein A
3652	 70.03	+1	4214412..4215095	+	227	117620761	-	AHA_3786	-	general secretion pathway protein B
3653	 66.67	0	4215293..4216354	+	353	117620493	mutY	AHA_3787	-	A/G-specific adenine glycosylase
3654	 53.48	-1	4216363..4216635	+	90	117619597	-	AHA_3788	-	hypothetical protein
3655	 64.32	0	4216639..4217829	+	396	117621296	-	AHA_3789	-	membrane-bound lytic murein transglycosylase C
3656	 61.42	0	4217896..4218276	-	126	117620765	-	AHA_3790	-	OB-fold nucleic acid binding domain-containing protein
3657	 61.85	0	4218430..4219530	+	366	117617463	-	AHA_3791	-	phosphatidylcholine-sterol acyltransferase
3658	 63.25	0	4219591..4220292	-	233	117621240	-	AHA_3792	-	hypothetical protein
3659	 62.98	0	4220559..4221617	+	352	117619103	-	AHA_3793	-	outer membrane protein A
3660	 67.19	0	4221703..4222272	-	189	117618513	-	AHA_3794	-	hypothetical protein
3661	 63.08	0	4222272..4223918	-	548	117620228	-	AHA_3795	-	paraquat-inducible protein B
3662	 62.22	0	4223911..4225191	-	426	117619635	-	AHA_3796	-	paraquat-inducible protein A
3663	 61.98	0	4225369..4225731	+	120	117618943	-	AHA_3797	-	Hfq protein
3664	 63.60	0	4225871..4226554	-	227	117619462	-	AHA_3798	-	CbbY family protein
3665	 65.31	0	4226527..4227630	-	367	117619577	-	AHA_3799	-	sensory box/GGDEF family protein, putative
3666	 61.67	0	4227635..4229275	-	546	117620127	-	AHA_3800	-	GGDEF family protein
3667	 64.83	0	4229370..4230242	-	290	117619615	dapA-2	AHA_3801	-	dihydrodipicolinate synthase
3668	 62.97	0	4230523..4231551	+	342	117620051	-	AHA_3802	-	ribosomal RNA small subunit methyltransferase C (rRNA(guanine-N(2)-)-methyltransferase)
3669	 60.67	0	4231701..4232918	+	405	117620757	glgC	AHA_3803	-	glucose-1-phosphate adenylyltransferase
3670	 61.81	0	4232908..4234368	+	486	117621301	glgA	AHA_3804	-	glycogen synthase
3671	 52.54	-1	4235158..4235511	+	117	117619585	-	AHA_3811	-	hypothetical protein
3672	 62.38	0	4235506..4235715	-	69	117620030	-	AHA_3810	-	hypothetical protein
3673	 62.62	0	4236015..4237424	+	469	117620744	nhaC	AHA_3812	-	Na+/H+ antiporter NhaC
3674	 68.94	+1	4237530..4238453	+	307	117621227	-	AHA_3813	-	transcriptional regulator
3675	 64.49	0	4238653..4239798	+	381	117617776	-	AHA_3814	-	ABC transporter, periplasmic substrate-binding protein
3676	 66.17	0	4239871..4240884	+	337	117618244	-	AHA_3815	-	ABC transporter, ATP-binding protein
3677	 65.33	0	4240881..4241849	+	322	117618184	-	AHA_3816	-	ABC transporter, permease protein
3678	 64.83	0	4241948..4242763	+	271	117617613	-	AHA_3817	-	ABC transporter, permease protein
3679	 67.30	0	4242793..4244223	+	476	117621075	-	AHA_3818	-	gamma-aminobutyraldehyde dehydrogenase
3680	 62.16	0	4244380..4244712	-	110	117620948	-	AHA_3819	-	hypothetical protein
3681	 68.38	+1	4245048..4245923	-	291	117618447	-	AHA_3820	-	drug/metabolite exporter family transporter
3682	 65.36	0	4246018..4246476	+	152	117617711	-	AHA_3821	-	AsnC family transcriptional regulator
3683	 65.35	0	4246595..4247200	-	201	117619360	-	AHA_3822	-	maltose O-acetyltransferase
3684	 62.76	0	4247204..4248865	-	553	117619150	treC	AHA_3823	-	alpha,alpha-phosphotrehalase
3685	 62.98	0	4248934..4250454	-	506	117618690	treP	AHA_3824	-	trehalose(maltose)-specific PTS system components IIBC
3686	 66.77	0	4250556..4251503	-	315	117620069	treR	AHA_3825	-	trehalose repressor
3687	 65.93	0	4251714..4252664	+	316	117617777	-	AHA_3826	-	transporter
3688	 63.59	0	4252732..4252926	+	64	117620395	-	AHA_3827	-	mercuric reductase (Hg(II) reductase)
3689	 64.59	0	4253059..4254117	+	352	117618845	-	AHA_3828	-	L-asparaginase, type II
3690	 63.58	0	4254208..4255341	-	377	117620155	-	AHA_3829	-	putative Ca2+/Na+ antiporter
3691	 59.52	0	4255585..4256172	+	195	117619713	-	AHA_3830	-	hypothetical protein
3692	 61.88	0	4256233..4256796	-	187	117621268	mgsA	AHA_3831	-	methylglyoxal synthase
62.23	MEAN

5.38	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.