ISLANDPATH - PATHOGENOMICS.

^{version
1.0}


IslandPath Analysis: Aeromonas hydrophila subsp. hydrophila ATCC 7966



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 62.23   STD DEV: 5.38
Aeromonas hydrophila subsp. hydrophila ATCC 7966, complete genome - 1..4744448
4122 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
3586	 58.33	0	4153800..4154327	-	175	117619927	-	AHA_3720	-	hypothetical protein
3587	 63.33	0	4154491..4154970	+	159	117620515	-	AHA_3721	-	MarR family transcriptional regulator
3588	 59.97	0	4155019..4155600	-	193	117621564	-	AHA_3722	-	protein of unknown function, DUF
3589	 63.49	0	4155763..4156707	+	314	117619068	-	AHA_3723	-	D-isomer specific 2-hydroxyacid dehydrogenase family protein
3590	 59.49	0	4156774..4158111	-	445	117618377	-	AHA_3724	-	metalloprotease opacity-associated protein A family
3591	 60.56	0	4158372..4159664	+	430	117617784	-	AHA_3725	-	hypothetical protein
3592	 61.78	0	4159664..4160605	+	313	117621188	-	AHA_3727	-	immunogenic protein
3593	 58.96	0	4160600..4161274	-	224	117620759	-	AHA_3726	-	periplasmic protein
3594	 62.95	0	4161360..4162274	-	304	117620049	znuA	AHA_3728	-	zinc ABC transporter, periplasmic zinc-binding protein
3595	 63.01	0	4162369..4163133	+	254	117619620	znuC	AHA_3729	-	high-affinity zinc uptake ABC transporter, ATP-binding protein ZnuC
3596	 63.97	0	4163155..4163934	+	259	117618931	znuB	AHA_3730	-	zinc uptake ABC transporter, permease protein ZnuB
3597	 64.81	0	4164025..4164942	-	305	117620291	-	AHA_3731	-	LysR family transcriptional regulator
3598	 65.62	0	4165034..4165891	+	285	117618577	-	AHA_3732	-	drug/metabolite exporter family protein
3599	 64.26	0	4165902..4166483	-	193	117621213	-	AHA_3733	-	uracil-DNA glycosylase
3600	 64.56	0	4166586..4167488	+	300	117620208	rarD-2	AHA_3735	-	RarD protein
3601	 61.50	0	4167470..4168204	-	244	117619532	-	AHA_3734	-	hypothetical protein
3602	 66.42	0	4168249..4168659	+	136	117619010	-	AHA_3736	-	endo/excinuclease domain-containing protein
3603	 60.73	0	4168744..4168962	-	72	117619443	pspG	AHA_3737	-	phage shock protein G
3604	 66.18	0	4169005..4169211	-	68	117617770	-	AHA_3738	-	hypothetical protein
3605	 64.25	0	4169214..4169876	-	220	117618223	-	AHA_3739	-	phage shock protein A
3606	 65.02	0	4170084..4170812	-	242	117621245	plsC	AHA_3740	-	1-acyl-sn-glycerol-3-phosphate acyltransferase
3607	 67.45	0	4170989..4171369	+	126	117617573	-	AHA_3741	-	membrane protein, suppressor for copper-sensitivity A
3608	 67.90	+1	4171353..4173467	+	704	117619399	-	AHA_3742	-	membrane protein, suppressor for copper-sensitivity B
3609	 65.74	0	4173478..4174233	+	251	117618988	-	AHA_3743	-	secreted protein, suppressor for copper-sensitivity C
3610	 67.32	0	4174245..4174397	+	50	117618252	-	AHA_3744	-	hypothetical protein
3611	 68.64	+1	4174473..4174928	+	151	117617795	-	AHA_3745	-	suppressor for copper-sensitivity D
3612	 57.14	0	4175115..4175492	+	125	117621093	-	AHA_3746	-	DnaJ domain-containing protein
3613	 61.69	0	4175516..4176058	+	180	117618611	-	AHA_3747	-	hypothetical protein
3614	 56.77	-1	4176071..4176838	+	255	117620454	-	AHA_3748	-	hypothetical protein
3615	 63.68	0	4176850..4177752	+	300	117620867	-	AHA_3749	-	hypothetical protein
3616	 58.16	0	4177959..4178240	+	93	117618329	-	AHA_3750	-	hypothetical protein
3617	 59.20	0	4178299..4178673	+	124	117620139	-	AHA_3751	-	hypothetical protein
3618	 50.84	-2	4178866..4180110	-	414	117620785	-	AHA_3752	-	multidrug transporter-like protein
3619	 50.06	-2	4180198..4181106	+	302	117619067	-	AHA_3753	-	LysR family transcriptional regulator
3620	 44.51	-2	4181200..4182282	-	360	117618323	-	AHA_3754	-	hypothetical protein
3621	 63.83	0	4182339..4184633	-	764	117619627	parC	AHA_3755	-	DNA topoisomerase IV subunit A
3622	 64.08	0	4184717..4186612	-	631	117618295	parE	AHA_3756	-	DNA topoisomerase IV subunit B
3623	 66.77	0	4186727..4188736	-	669	117618909	-	AHA_3757	-	transport protein YdhK
3624	 65.86	0	4188738..4189604	-	288	117620113	-	AHA_3758	-	HlyD family secretion protein
3625	 61.11	0	4189597..4189866	-	89	117620708	-	AHA_3759	-	hypothetical protein
3626	 64.68	0	4189933..4190334	-	133	117619165	-	AHA_3760	-	glutathione-dependent formaldehyde-activating, GFA
3627	 66.19	0	4190372..4190995	-	207	117619595	-	AHA_3761	-	mutator MutT protein
3628	 65.65	0	4190998..4191585	-	195	117620949	-	AHA_3762	-	esterase YqiA
3629	 65.69	0	4191595..4192413	-	272	117621551	-	AHA_3763	-	Icc protein
3630	 54.14	-1	4192440..4192886	-	148	117619765	-	AHA_3764	-	phosphohydrolase
3631	 62.87	0	4192888..4193598	-	236	117620429	-	AHA_3765	-	hypothetical protein
3632	 57.52	0	4193783..4195159	+	458	117620693	-	AHA_3766	-	HAS ABC exporter outer membrane component
3633	 66.11	0	4195263..4196690	-	475	117618061	hldE	AHA_3767	-	bifunctional heptose 7-phosphate kinase/heptose 1-phosphate adenyltransferase
3634	 64.18	0	4196996..4197919	+	307	117619813	htrB	AHA_3768	-	lipid A biosynthesis lauroyl acyltransferase
3635	 63.89	0	4198072..4198539	+	155	117621331	-	AHA_3769	-	TonB domain-containing protein
3636	 62.29	0	4198649..4199608	-	319	117619283	-	AHA_3770	-	adenylate cyclase
3637	 54.88	-1	4199773..4200459	+	228	117618887	-	AHA_3771	-	hypothetical protein
3638	 63.74	0	4200483..4201748	+	421	117618270	-	AHA_3772	-	Pho4 family protein
3639	 63.64	0	4201896..4202357	+	153	117617827	-	AHA_3773	-	ybaK/ebsC protein
3640	 66.75	0	4202397..4203659	-	420	117617528	-	AHA_3774	-	hypothetical protein
3641	 67.77	+1	4203884..4204606	-	240	117617835	-	AHA_3775	-	ribosomal protein serine acetyltransferase
3642	 66.21	0	4204596..4205033	-	145	117620513	-	AHA_3776	-	hypothetical protein
3643	 66.67	0	4205051..4205518	-	155	117620830	-	AHA_3777	-	OsmC/Ohr family protein
3644	 71.89	+1	4205647..4207083	+	478	117619323	-	AHA_3778	-	GntR family transcriptional regulator
3645	 68.01	+1	4207099..4207992	-	297	117619976	-	AHA_3779	-	LysR family transcriptional regulator
3646	 64.18	0	4208120..4208521	+	133	117619114	-	AHA_3780	-	murein hydrolase exporter
3647	 65.36	0	4208514..4209203	+	229	117619480	-	AHA_3781	-	LrgB family protein
3648	 65.68	0	4209300..4210214	+	304	117618877	-	AHA_3782	-	hypothetical protein
3649	 64.05	0	4210291..4211169	+	292	117618254	-	AHA_3783	-	hypothetical protein
3650	 68.20	+1	4211256..4212494	-	412	117619276	-	AHA_3784	-	multifunctional CCA protein
3651	 66.73	0	4212835..4214412	+	525	117621302	exeA	AHA_3785	-	general secretion pathway protein A
3652	 70.03	+1	4214412..4215095	+	227	117620761	-	AHA_3786	-	general secretion pathway protein B
3653	 66.67	0	4215293..4216354	+	353	117620493	mutY	AHA_3787	-	A/G-specific adenine glycosylase
3654	 53.48	-1	4216363..4216635	+	90	117619597	-	AHA_3788	-	hypothetical protein
3655	 64.32	0	4216639..4217829	+	396	117621296	-	AHA_3789	-	membrane-bound lytic murein transglycosylase C
3656	 61.42	0	4217896..4218276	-	126	117620765	-	AHA_3790	-	OB-fold nucleic acid binding domain-containing protein
3657	 61.85	0	4218430..4219530	+	366	117617463	-	AHA_3791	-	phosphatidylcholine-sterol acyltransferase
3658	 63.25	0	4219591..4220292	-	233	117621240	-	AHA_3792	-	hypothetical protein
3659	 62.98	0	4220559..4221617	+	352	117619103	-	AHA_3793	-	outer membrane protein A
3660	 67.19	0	4221703..4222272	-	189	117618513	-	AHA_3794	-	hypothetical protein
3661	 63.08	0	4222272..4223918	-	548	117620228	-	AHA_3795	-	paraquat-inducible protein B
3662	 62.22	0	4223911..4225191	-	426	117619635	-	AHA_3796	-	paraquat-inducible protein A
3663	 61.98	0	4225369..4225731	+	120	117618943	-	AHA_3797	-	Hfq protein
3664	 63.60	0	4225871..4226554	-	227	117619462	-	AHA_3798	-	CbbY family protein
3665	 65.31	0	4226527..4227630	-	367	117619577	-	AHA_3799	-	sensory box/GGDEF family protein, putative
3666	 61.67	0	4227635..4229275	-	546	117620127	-	AHA_3800	-	GGDEF family protein
3667	 64.83	0	4229370..4230242	-	290	117619615	dapA-2	AHA_3801	-	dihydrodipicolinate synthase
3668	 62.97	0	4230523..4231551	+	342	117620051	-	AHA_3802	-	ribosomal RNA small subunit methyltransferase C (rRNA(guanine-N(2)-)-methyltransferase)
3669	 60.67	0	4231701..4232918	+	405	117620757	glgC	AHA_3803	-	glucose-1-phosphate adenylyltransferase
3670	 61.81	0	4232908..4234368	+	486	117621301	glgA	AHA_3804	-	glycogen synthase
3671	 52.54	-1	4235158..4235511	+	117	117619585	-	AHA_3811	-	hypothetical protein
3672	 62.38	0	4235506..4235715	-	69	117620030	-	AHA_3810	-	hypothetical protein
3673	 62.62	0	4236015..4237424	+	469	117620744	nhaC	AHA_3812	-	Na+/H+ antiporter NhaC
3674	 68.94	+1	4237530..4238453	+	307	117621227	-	AHA_3813	-	transcriptional regulator
3675	 64.49	0	4238653..4239798	+	381	117617776	-	AHA_3814	-	ABC transporter, periplasmic substrate-binding protein
3676	 66.17	0	4239871..4240884	+	337	117618244	-	AHA_3815	-	ABC transporter, ATP-binding protein
3677	 65.33	0	4240881..4241849	+	322	117618184	-	AHA_3816	-	ABC transporter, permease protein
3678	 64.83	0	4241948..4242763	+	271	117617613	-	AHA_3817	-	ABC transporter, permease protein
3679	 67.30	0	4242793..4244223	+	476	117621075	-	AHA_3818	-	gamma-aminobutyraldehyde dehydrogenase
3680	 62.16	0	4244380..4244712	-	110	117620948	-	AHA_3819	-	hypothetical protein
3681	 68.38	+1	4245048..4245923	-	291	117618447	-	AHA_3820	-	drug/metabolite exporter family transporter
3682	 65.36	0	4246018..4246476	+	152	117617711	-	AHA_3821	-	AsnC family transcriptional regulator
3683	 65.35	0	4246595..4247200	-	201	117619360	-	AHA_3822	-	maltose O-acetyltransferase
3684	 62.76	0	4247204..4248865	-	553	117619150	treC	AHA_3823	-	alpha,alpha-phosphotrehalase
3685	 62.98	0	4248934..4250454	-	506