IslandPath Analysis: Aeromonas hydrophila subsp. hydrophila ATCC 7966



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 62.23   STD DEV: 5.38
Aeromonas hydrophila subsp. hydrophila ATCC 7966, complete genome - 1..4744448
4122 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
3546	 58.33	0	4104268..4104531	-	87	117618774	-	AHA_3672	-	hypothetical protein
3547	 59.09	0	4104503..4104964	-	153	117618522	-	AHA_3673	-	chemotaxis protein CheX
3548	 55.99	-1	4104954..4105412	-	152	117620096	zur	AHA_3674	-	zinc uptake regulation protein
3549	 60.49	0	4105551..4106537	+	328	117618436	dusA	AHA_3675	-	tRNA-dihydrouridine synthase A
3550	 61.33	0	4106540..4106689	+	49	117618494	-	AHA_3676	-	hypothetical protein
3551	 59.62	0	4106764..4107189	-	141	117621226	-	AHA_3677	-	hypothetical protein
3552	 50.51	-2	4107291..4107587	-	98	117617689	-	AHA_3678	-	DNA-binding protein HU-alpha
3553	 57.76	0	4107905..4108387	+	160	117621366	algQ	AHA_3679	-	anti-RNA polymerase sigma 70 factor
3554	 57.22	0	4108489..4108869	+	126	117617946	-	AHA_3680	-	type IV pilus assembly protein PilZ
3555	 64.03	0	4108941..4110305	-	454	117619550	radA	AHA_3681	-	DNA repair protein RadA
3556	 63.41	0	4111911..4112678	+	255	117619089	-	AHA_3683	-	hypothetical protein
3557	 65.01	0	4112807..4113712	-	301	117619910	-	AHA_3684	-	esterase/lipase
3558	 66.37	0	4113762..4115468	-	568	117619146	-	AHA_3685	-	phosphoserine phosphatase
3559	 67.51	0	4115555..4117801	+	748	117619584	-	AHA_3686	-	histidine kinase-response regulator hybrid protein
3560	 59.14	0	4117871..4118587	-	238	117618320	deoD-2	AHA_3687	-	purine nucleoside phosphorylase
3561	 63.03	0	4118665..4119873	-	402	117618803	deoB	AHA_3688	-	phosphopentomutase
3562	 61.94	0	4119888..4121219	-	443	117618002	deoA	AHA_3689	-	thymidine phosphorylase
3563	 62.14	0	4121329..4122102	-	257	117618460	deoC-2	AHA_3690	-	deoxyribose-phosphate aldolase
3564	 57.73	0	4122788..4124062	-	424	117621118	-	AHA_3691	-	NupC family nucleoside transporter
3565	 63.37	0	4124276..4125064	-	262	117617593	-	AHA_3692	-	putative deoxyribonuclease
3566	 61.00	0	4125105..4125722	+	205	117619650	-	AHA_3693	-	N-terminal methylation domain-containing protein
3567	 63.27	0	4126088..4127440	-	450	117620248	rumA-2	AHA_3694	-	23S rRNA (uracil-5-)-methyltransferase RumA
3568	 64.86	0	4127775..4129211	-	478	117617972	amt	AHA_3695	-	ammonium transporter
3569	 60.81	0	4129799..4130413	+	204	117621537	-	AHA_3697	-	proline-rich antigen
3570	 61.90	0	4130568..4131638	-	356	117619151	-	AHA_3698	-	putative permease
3571	 61.97	0	4131780..4132886	-	368	117618567	-	AHA_3699	-	putative permease
3572	 62.49	0	4133065..4134573	+	502	117620405	pepA	AHA_3700	-	leucyl aminopeptidase
3573	 63.60	0	4134736..4135191	+	151	117619980	-	AHA_3701	-	DNA polymerase III, chi subunit
3574	 61.59	0	4135194..4138109	+	971	117621368	valS	AHA_3702	-	valyl-tRNA synthetase
3575	 61.21	0	4138122..4139588	+	488	117620852	-	AHA_3703	-	CBS domain-containing protein
3576	 60.06	0	4139607..4140272	+	221	117617498	-	AHA_3704	-	DedA family protein
3577	 62.92	0	4140412..4141239	+	275	117621185	-	AHA_3705	-	D-alanyl-D-alanine carboxypeptidase family protein
3578	 53.44	-1	4142483..4142671	-	62	117620430	csrA	AHA_3712	-	carbon storage regulator
3579	 61.22	0	4142765..4144012	-	415	117620906	-	AHA_3713	-	aspartate kinase
3580	 61.30	0	4144029..4146653	-	874	117621345	alaS	AHA_3714	-	alanyl-tRNA synthetase
3581	 61.68	0	4147104..4147604	-	166	117617700	recX	AHA_3715	-	regulatory protein RecX
3582	 59.81	0	4147646..4148710	-	354	117617987	recA	AHA_3716	-	recA protein
3583	 66.06	0	4148790..4149281	-	163	117618605	-	AHA_3717	-	CinA, C-terminal
3584	 65.81	0	4149516..4152098	+	860	117619909	mutS	AHA_3718	-	DNA mismatch repair protein MutS
3585	 62.73	0	4152192..4153790	-	532	117620494	-	AHA_3719	-	BCCT family transporter
3586	 58.33	0	4153800..4154327	-	175	117619927	-	AHA_3720	-	hypothetical protein
3587	 63.33	0	4154491..4154970	+	159	117620515	-	AHA_3721	-	MarR family transcriptional regulator
3588	 59.97	0	4155019..4155600	-	193	117621564	-	AHA_3722	-	protein of unknown function, DUF
3589	 63.49	0	4155763..4156707	+	314	117619068	-	AHA_3723	-	D-isomer specific 2-hydroxyacid dehydrogenase family protein
3590	 59.49	0	4156774..4158111	-	445	117618377	-	AHA_3724	-	metalloprotease opacity-associated protein A family
3591	 60.56	0	4158372..4159664	+	430	117617784	-	AHA_3725	-	hypothetical protein
3592	 61.78	0	4159664..4160605	+	313	117621188	-	AHA_3727	-	immunogenic protein
3593	 58.96	0	4160600..4161274	-	224	117620759	-	AHA_3726	-	periplasmic protein
3594	 62.95	0	4161360..4162274	-	304	117620049	znuA	AHA_3728	-	zinc ABC transporter, periplasmic zinc-binding protein
3595	 63.01	0	4162369..4163133	+	254	117619620	znuC	AHA_3729	-	high-affinity zinc uptake ABC transporter, ATP-binding protein ZnuC
3596	 63.97	0	4163155..4163934	+	259	117618931	znuB	AHA_3730	-	zinc uptake ABC transporter, permease protein ZnuB
3597	 64.81	0	4164025..4164942	-	305	117620291	-	AHA_3731	-	LysR family transcriptional regulator
3598	 65.62	0	4165034..4165891	+	285	117618577	-	AHA_3732	-	drug/metabolite exporter family protein
3599	 64.26	0	4165902..4166483	-	193	117621213	-	AHA_3733	-	uracil-DNA glycosylase
3600	 64.56	0	4166586..4167488	+	300	117620208	rarD-2	AHA_3735	-	RarD protein
3601	 61.50	0	4167470..4168204	-	244	117619532	-	AHA_3734	-	hypothetical protein
3602	 66.42	0	4168249..4168659	+	136	117619010	-	AHA_3736	-	endo/excinuclease domain-containing protein
3603	 60.73	0	4168744..4168962	-	72	117619443	pspG	AHA_3737	-	phage shock protein G
3604	 66.18	0	4169005..4169211	-	68	117617770	-	AHA_3738	-	hypothetical protein
3605	 64.25	0	4169214..4169876	-	220	117618223	-	AHA_3739	-	phage shock protein A
3606	 65.02	0	4170084..4170812	-	242	117621245	plsC	AHA_3740	-	1-acyl-sn-glycerol-3-phosphate acyltransferase
3607	 67.45	0	4170989..4171369	+	126	117617573	-	AHA_3741	-	membrane protein, suppressor for copper-sensitivity A
3608	 67.90	+1	4171353..4173467	+	704	117619399	-	AHA_3742	-	membrane protein, suppressor for copper-sensitivity B
3609	 65.74	0	4173478..4174233	+	251	117618988	-	AHA_3743	-	secreted protein, suppressor for copper-sensitivity C
3610	 67.32	0	4174245..4174397	+	50	117618252	-	AHA_3744	-	hypothetical protein
3611	 68.64	+1	4174473..4174928	+	151	117617795	-	AHA_3745	-	suppressor for copper-sensitivity D
3612	 57.14	0	4175115..4175492	+	125	117621093	-	AHA_3746	-	DnaJ domain-containing protein
3613	 61.69	0	4175516..4176058	+	180	117618611	-	AHA_3747	-	hypothetical protein
3614	 56.77	-1	4176071..4176838	+	255	117620454	-	AHA_3748	-	hypothetical protein
3615	 63.68	0	4176850..4177752	+	300	117620867	-	AHA_3749	-	hypothetical protein
3616	 58.16	0	4177959..4178240	+	93	117618329	-	AHA_3750	-	hypothetical protein
3617	 59.20	0	4178299..4178673	+	124	117620139	-	AHA_3751	-	hypothetical protein
3618	 50.84	-2	4178866..4180110	-	414	117620785	-	AHA_3752	-	multidrug transporter-like protein
3619	 50.06	-2	4180198..4181106	+	302	117619067	-	AHA_3753	-	LysR family transcriptional regulator
3620	 44.51	-2	4181200..4182282	-	360	117618323	-	AHA_3754	-	hypothetical protein
3621	 63.83	0	4182339..4184633	-	764	117619627	parC	AHA_3755	-	DNA topoisomerase IV subunit A
3622	 64.08	0	4184717..4186612	-	631	117618295	parE	AHA_3756	-	DNA topoisomerase IV subunit B
3623	 66.77	0	4186727..4188736	-	669	117618909	-	AHA_3757	-	transport protein YdhK
3624	 65.86	0	4188738..4189604	-	288	117620113	-	AHA_3758	-	HlyD family secretion protein
3625	 61.11	0	4189597..4189866	-	89	117620708	-	AHA_3759	-	hypothetical protein
3626	 64.68	0	4189933..4190334	-	133	117619165	-	AHA_3760	-	glutathione-dependent formaldehyde-activating, GFA
3627	 66.19	0	4190372..4190995	-	207	117619595	-	AHA_3761	-	mutator MutT protein
3628	 65.65	0	4190998..4191585	-	195	117620949	-	AHA_3762	-	esterase YqiA
3629	 65.69	0	4191595..4192413	-	272	117621551	-	AHA_3763	-	Icc protein
3630	 54.14	-1	4192440..4192886	-	148	117619765	-	AHA_3764	-	phosphohydrolase
3631	 62.87	0	4192888..4193598	-	236	117620429	-	AHA_3765	-	hypothetical protein
3632	 57.52	0	4193783..4195159	+	458	117620693	-	AHA_3766	-	HAS ABC exporter outer membrane component
3633	 66.11	0	4195263..4196690	-	475	117618061	hldE	AHA_3767	-	bifunctional heptose 7-phosphate kinase/heptose 1-phosphate adenyltransferase
3634	 64.18	0	4196996..4197919	+	307	117619813	htrB	AHA_3768	-	lipid A biosynthesis lauroyl acyltransferase
3635	 63.89	0	4198072..4198539	+	155	117621331	-	AHA_3769	-	TonB domain-containing protein
3636	 62.29	0	4198649..4199608	-	319	117619283	-	AHA_3770	-	adenylate cyclase
3637	 54.88	-1	4199773..4200459	+	228	117618887	-	AHA_3771	-	hypothetical protein
3638	 63.74	0	4200483..4201748	+	421	117618270	-	AHA_3772	-	Pho4 family protein
3639	 63.64	0	4201896..4202357	+	153	117617827	-	AHA_3773	-	ybaK/ebsC protein
3640	 66.75	0	4202397..4203659	-	420	117617528	-	AHA_3774	-	hypothetical protein
3641	 67.77	+1	4203884..4204606	-	240	117617835	-	AHA_3775	-	ribosomal protein serine acetyltransferase
3642	 66.21	0	4204596..4205033	-	145	117620513	-	AHA_3776	-	hypothetical protein
3643	 66.67	0	4205051..4205518	-	155	117620830	-	AHA_3777	-	OsmC/Ohr family protein
3644	 71.89	+1	4205647..4207083	+	478	117619323	-	AHA_3778	-	GntR family transcriptional regulator
3645	 68.01	+1	4207099..4207992	-	297	117619976	-	AHA_3779	-	LysR family transcriptional regulator
62.23	MEAN

5.38	STD DEV




Last Updated: Dec 04, 2008