IslandPath Analysis: Aeromonas hydrophila subsp. hydrophila ATCC 7966



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 62.23   STD DEV: 5.38
Aeromonas hydrophila subsp. hydrophila ATCC 7966, complete genome - 1..4744448
4122 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
3476	 61.70	0	4029237..4030343	-	368	117620935	-	AHA_3588	-	acyltransferase family protein
3477	 69.15	+1	4030504..4032153	-	549	117620586	-	AHA_3589	-	multicopper oxidase
3478	 66.67	0	4032410..4033102	-	230	117618212	-	AHA_3590	-	aspartate racemase
3479	 67.17	0	4033247..4033837	-	196	117618326	-	AHA_3591	-	lysine exporter protein
3480	 66.95	0	4033899..4036052	+	717	117618129	-	AHA_3592	-	transcriptional regulator, GntR family/aminotransferase, classes I and II family protein
3481	 72.69	+1	4036095..4036559	+	154	117620361	-	AHA_3593	-	hypothetical protein
3482	 69.00	+1	4036620..4038719	+	699	117619800	-	AHA_3594	-	hypothetical protein
3483	 67.49	0	4038689..4039414	+	241	117621558	-	AHA_3596	-	hypothetical protein
3484	 66.12	0	4039411..4041048	-	545	117620913	-	AHA_3595	-	hypothetical protein
3485	 66.24	0	4039525..4041150	+	541	117620921	-	AHA_3597	-	hypothetical protein
3486	 66.06	0	4041171..4042484	-	437	117617544	-	AHA_3598	-	sodium-dependent symporter family protein
3487	 62.55	0	4042708..4043655	+	315	117619049	-	AHA_3599	-	hypothetical protein
3488	 66.74	0	4043656..4044969	-	437	117618719	-	AHA_3600	-	sodium-dependent transporter
3489	 63.57	0	4045184..4046023	-	279	117618721	-	AHA_3601	-	isopenicillin N synthase
3490	 63.12	0	4046232..4046795	+	187	117621257	-	AHA_3602	-	ATPase involved in DNA repair
3491	 66.06	0	4046848..4047669	-	273	117621361	-	AHA_3603	-	phosphatase YbhA
3492	 67.23	0	4047972..4049213	-	413	117618085	-	AHA_3604	-	MFS family transporter
3493	 65.86	0	4049380..4050000	+	206	117618662	-	AHA_3605	-	hypothetical protein
3494	 62.47	0	4050309..4050785	+	158	117618113	-	AHA_3606	-	bkd operon transcriptional regulator
3495	 62.89	0	4050875..4051192	-	105	117620605	-	AHA_3607	-	hypothetical protein
3496	 62.28	0	4051338..4051565	-	75	117620832	-	AHA_3608	-	hypothetical protein
3497	 60.81	0	4051599..4052093	-	164	117619751	-	AHA_3609	-	MarR family transcriptional regulator
3498	 65.20	0	4052137..4052613	+	158	117619580	-	AHA_3610	-	organic hydroperoxide reductase
3499	 67.06	0	4052696..4053700	+	334	117617806	-	AHA_3611	-	NADP-dependent oxidoreductase p1
3500	 65.32	0	4053807..4054250	+	147	117621050	-	AHA_3612	-	nudix hydrolase 1
3501	 69.27	+1	4054477..4055628	+	383	117620510	-	AHA_3613	-	chromate transport protein ChrA
3502	 65.39	0	4055709..4056101	-	130	117620213	msrB	AHA_3614	-	methionine-R-sulfoxide reductase
3503	 65.64	0	4056158..4058299	-	713	117619662	glgX-2	AHA_3615	-	glycogen debranching enzyme GlgX
3504	 61.94	0	4058299..4060476	-	725	117617687	glgB	AHA_3616	-	glycogen branching enzyme
3505	 63.33	0	4060559..4062835	-	758	117621052	malQ	AHA_3617	-	4-alpha-glucanotransferase
3506	 55.52	-1	4063095..4064090	+	331	117620869	gap-2	AHA_3618	-	glyceraldehyde-3-phosphate dehydrogenase, type I
3507	 65.05	0	4064206..4065072	+	288	117620178	-	AHA_3619	-	aldose 1-epimerase family protein
3508	 64.25	0	4065142..4066176	-	344	117619327	nadA	AHA_3620	-	quinolinate synthetase
3509	 63.96	0	4066356..4068461	+	701	117621406	-	AHA_3621	-	methyl-accepting chemotaxis protein
3510	 60.02	0	4070047..4070859	-	270	117618152	-	AHA_3636	-	TPR domain-containing protein
3511	 58.86	0	4071009..4071533	-	174	117617688	pal	AHA_3637	-	peptidoglycan-associated lipoprotein
3512	 58.82	0	4071583..4072908	-	441	117619070	tolB	AHA_3638	-	beta-propeller repeat-containing to-pal system protein TolB
3513	 58.25	0	4073003..4074166	-	387	117617662	tolA	AHA_3639	-	protein TolA
3514	 60.40	0	4074172..4074618	-	148	117619046	tolR	AHA_3640	-	protein TolR
3515	 57.83	0	4074618..4075307	-	229	117618590	tolQ	AHA_3641	-	protein TolQ
3516	 52.70	-1	4075297..4075704	-	135	117620441	-	AHA_3642	-	acyl-CoA thioester hydrolase YbgC
3517	 61.34	0	4075810..4076166	-	118	117619995	-	AHA_3643	-	protein YbgE
3518	 52.14	-1	4076108..4076224	-	38	117621339	-	AHA_3644	-	cyd operon protein YbgT
3519	 59.89	0	4076239..4077375	-	378	117618417	cydB-2	AHA_3645	-	cytochrome d ubiquinol oxidase, subunit II
3520	 58.51	0	4077388..4078944	-	518	117617801	cydA	AHA_3646	-	cytochrome d ubiquinol oxidase, subunit I
3521	 61.72	0	4079881..4080891	-	336	117617467	ruvB	AHA_3647	-	Holliday junction DNA helicase B
3522	 61.79	0	4080900..4081514	-	204	117618993	ruvA	AHA_3648	-	Holliday junction DNA helicase RuvA
3523	 62.79	0	4081753..4083762	+	669	117617741	-	AHA_3649	-	methyl-accepting chemotaxis protein
3524	 62.96	0	4083898..4085622	+	574	117619295	proS	AHA_3650	-	prolyl-tRNA synthetase
3525	 64.16	0	4085709..4086386	-	225	117618970	-	AHA_3651	-	short chain dehydrogenase/reductase family oxidoreductase
3526	 59.21	0	4086451..4087080	-	209	117620399	-	AHA_3652	-	hypothetical protein
3527	 63.49	0	4087176..4087616	-	146	117620105	-	AHA_3653	-	transporter
3528	 63.08	0	4087676..4088455	+	259	117619560	-	AHA_3654	-	enoyl-CoA hydratase/isomerase family protein
3529	 64.34	0	4088459..4088887	-	142	117620217	-	AHA_3655	-	hypothetical protein
3530	 63.81	0	4089178..4089843	+	221	117618631	-	AHA_3656	-	chloramphenicol acetyltransferase
3531	 62.71	0	4089895..4090602	-	235	117619438	-	AHA_3657	-	hypothetical protein
3532	 64.11	0	4090775..4092379	+	534	117617812	-	AHA_3658	-	periplasmic murein peptide-binding protein
3533	 63.81	0	4092384..4092803	+	139	117617837	-	AHA_3659	-	hypothetical protein
3534	 61.19	0	4092858..4093277	-	139	117618422	-	AHA_3660	-	hypothetical protein
3535	 61.00	0	4093296..4093595	-	99	117621083	-	AHA_3661	-	hypothetical protein
3536	 60.14	0	4093595..4094146	-	183	117619611	-	AHA_3662	-	integral membrane protein
3537	 67.52	0	4094187..4095011	-	274	117618903	proC	AHA_3663	-	pyrroline-5-carboxylate reductase
3538	 61.11	0	4095070..4095771	-	233	117619465	-	AHA_3664	-	hypothetical protein
3539	 61.06	0	4095811..4096845	+	344	117620239	-	AHA_3665	-	twitching mobility protein
3540	 63.96	0	4096874..4097983	+	369	117619622	-	AHA_3666	-	twitching motility protein PilU
3541	 61.63	0	4098015..4098788	+	257	117621094	-	AHA_3667	-	hypothetical protein
3542	 63.32	0	4098965..4100188	-	407	117620545	-	AHA_3668	-	ATP-dependent RNA helicase SrmB
3543	 57.95	0	4100317..4101027	+	236	117618463	-	AHA_3669	-	SmtA protein
3544	 62.77	0	4101219..4102526	+	435	117617883	brnQ-2	AHA_3670	-	branched-chain amino acid transport system II carrier protein
3545	 62.40	0	4102863..4104197	+	444	117619352	brnQ-3	AHA_3671	-	branched-chain amino acid transport system II carrier protein
3546	 58.33	0	4104268..4104531	-	87	117618774	-	AHA_3672	-	hypothetical protein
3547	 59.09	0	4104503..4104964	-	153	117618522	-	AHA_3673	-	chemotaxis protein CheX
3548	 55.99	-1	4104954..4105412	-	152	117620096	zur	AHA_3674	-	zinc uptake regulation protein
3549	 60.49	0	4105551..4106537	+	328	117618436	dusA	AHA_3675	-	tRNA-dihydrouridine synthase A
3550	 61.33	0	4106540..4106689	+	49	117618494	-	AHA_3676	-	hypothetical protein
3551	 59.62	0	4106764..4107189	-	141	117621226	-	AHA_3677	-	hypothetical protein
3552	 50.51	-2	4107291..4107587	-	98	117617689	-	AHA_3678	-	DNA-binding protein HU-alpha
3553	 57.76	0	4107905..4108387	+	160	117621366	algQ	AHA_3679	-	anti-RNA polymerase sigma 70 factor
3554	 57.22	0	4108489..4108869	+	126	117617946	-	AHA_3680	-	type IV pilus assembly protein PilZ
3555	 64.03	0	4108941..4110305	-	454	117619550	radA	AHA_3681	-	DNA repair protein RadA
3556	 63.41	0	4111911..4112678	+	255	117619089	-	AHA_3683	-	hypothetical protein
3557	 65.01	0	4112807..4113712	-	301	117619910	-	AHA_3684	-	esterase/lipase
3558	 66.37	0	4113762..4115468	-	568	117619146	-	AHA_3685	-	phosphoserine phosphatase
3559	 67.51	0	4115555..4117801	+	748	117619584	-	AHA_3686	-	histidine kinase-response regulator hybrid protein
3560	 59.14	0	4117871..4118587	-	238	117618320	deoD-2	AHA_3687	-	purine nucleoside phosphorylase
3561	 63.03	0	4118665..4119873	-	402	117618803	deoB	AHA_3688	-	phosphopentomutase
3562	 61.94	0	4119888..4121219	-	443	117618002	deoA	AHA_3689	-	thymidine phosphorylase
3563	 62.14	0	4121329..4122102	-	257	117618460	deoC-2	AHA_3690	-	deoxyribose-phosphate aldolase
3564	 57.73	0	4122788..4124062	-	424	117621118	-	AHA_3691	-	NupC family nucleoside transporter
3565	 63.37	0	4124276..4125064	-	262	117617593	-	AHA_3692	-	putative deoxyribonuclease
3566	 61.00	0	4125105..4125722	+	205	117619650	-	AHA_3693	-	N-terminal methylation domain-containing protein
3567	 63.27	0	4126088..4127440	-	450	117620248	rumA-2	AHA_3694	-	23S rRNA (uracil-5-)-methyltransferase RumA
3568	 64.86	0	4127775..4129211	-	478	117617972	amt	AHA_3695	-	ammonium transporter
3569	 60.81	0	4129799..4130413	+	204	117621537	-	AHA_3697	-	proline-rich antigen
3570	 61.90	0	4130568..4131638	-	356	117619151	-	AHA_3698	-	putative permease
3571	 61.97	0	4131780..4132886	-	368	117618567	-	AHA_3699	-	putative permease
3572	 62.49	0	4133065..4134573	+	502	117620405	pepA	AHA_3700	-	leucyl aminopeptidase
3573	 63.60	0	4134736..4135191	+	151	117619980	-	AHA_3701	-	DNA polymerase III, chi subunit
3574	 61.59	0	4135194..4138109	+	971	117621368	valS	AHA_3702	-	valyl-tRNA synthetase
3575	 61.21	0	4138122..4139588	+	488	117620852	-	AHA_3703	-	CBS domain-containing protein
62.23	MEAN

5.38	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was pro