IslandPathversion 1.0

IslandPath Analysis: Aeromonas hydrophila subsp. hydrophila ATCC 7966



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 62.23 STD DEV: 5.38
Aeromonas hydrophila subsp. hydrophila ATCC 7966, complete genome - 1..4744448
4122 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
3463	 68.49	+1	4015044..4015973	-	309	117618303	-	AHA_3575	-	transcriptional regulator
3464	 66.50	0	4016083..4016682	+	199	117617849	-	AHA_3576	-	acyl carrier protein phosphodiesterase
3465	 60.51	0	4016779..4017054	-	91	117619134	-	AHA_3577	-	hypothetical protein
3466	 62.53	0	4017172..4017534	+	120	117618514	-	AHA_3578	-	hypothetical protein
3467	 58.97	0	4017870..4018298	+	142	117617761	-	AHA_3579	-	glyoxalase family protein
3468	 34.70	-2	4018374..4020203	+	609	117617686	-	AHA_3580	-	ATP-dependent DNA helicase RecG
3469	 64.62	0	4020513..4021343	+	276	117620924	-	AHA_3581	-	hydrolase protein, putative
3470	 51.98	-1	4021377..4022486	-	369	117621393	-	AHA_3582	-	hypothetical protein
3471	 65.28	0	4022787..4024304	-	505	117617666	putP	AHA_3583	-	sodium/proline symporter
3472	 65.22	0	4024593..4025627	-	344	117619176	-	AHA_3584	-	LysM domain-containing protein
3473	 63.12	0	4025707..4026948	-	413	117618837	-	AHA_3585	-	mechanosensitive ion channel
3474	 64.00	0	4027082..4028281	-	399	117620506	ackA-2	AHA_3586	-	acetate kinase
3475	 64.97	0	4028456..4028926	-	156	117621530	-	AHA_3587	-	hypothetical protein
3476	 61.70	0	4029237..4030343	-	368	117620935	-	AHA_3588	-	acyltransferase family protein
3477	 69.15	+1	4030504..4032153	-	549	117620586	-	AHA_3589	-	multicopper oxidase
3478	 66.67	0	4032410..4033102	-	230	117618212	-	AHA_3590	-	aspartate racemase
3479	 67.17	0	4033247..4033837	-	196	117618326	-	AHA_3591	-	lysine exporter protein
3480	 66.95	0	4033899..4036052	+	717	117618129	-	AHA_3592	-	transcriptional regulator, GntR family/aminotransferase, classes I and II family protein
3481	 72.69	+1	4036095..4036559	+	154	117620361	-	AHA_3593	-	hypothetical protein
3482	 69.00	+1	4036620..4038719	+	699	117619800	-	AHA_3594	-	hypothetical protein
3483	 67.49	0	4038689..4039414	+	241	117621558	-	AHA_3596	-	hypothetical protein
3484	 66.12	0	4039411..4041048	-	545	117620913	-	AHA_3595	-	hypothetical protein
3485	 66.24	0	4039525..4041150	+	541	117620921	-	AHA_3597	-	hypothetical protein
3486	 66.06	0	4041171..4042484	-	437	117617544	-	AHA_3598	-	sodium-dependent symporter family protein
3487	 62.55	0	4042708..4043655	+	315	117619049	-	AHA_3599	-	hypothetical protein
3488	 66.74	0	4043656..4044969	-	437	117618719	-	AHA_3600	-	sodium-dependent transporter
3489	 63.57	0	4045184..4046023	-	279	117618721	-	AHA_3601	-	isopenicillin N synthase
3490	 63.12	0	4046232..4046795	+	187	117621257	-	AHA_3602	-	ATPase involved in DNA repair
3491	 66.06	0	4046848..4047669	-	273	117621361	-	AHA_3603	-	phosphatase YbhA
3492	 67.23	0	4047972..4049213	-	413	117618085	-	AHA_3604	-	MFS family transporter
3493	 65.86	0	4049380..4050000	+	206	117618662	-	AHA_3605	-	hypothetical protein
3494	 62.47	0	4050309..4050785	+	158	117618113	-	AHA_3606	-	bkd operon transcriptional regulator
3495	 62.89	0	4050875..4051192	-	105	117620605	-	AHA_3607	-	hypothetical protein
3496	 62.28	0	4051338..4051565	-	75	117620832	-	AHA_3608	-	hypothetical protein
3497	 60.81	0	4051599..4052093	-	164	117619751	-	AHA_3609	-	MarR family transcriptional regulator
3498	 65.20	0	4052137..4052613	+	158	117619580	-	AHA_3610	-	organic hydroperoxide reductase
3499	 67.06	0	4052696..4053700	+	334	117617806	-	AHA_3611	-	NADP-dependent oxidoreductase p1
3500	 65.32	0	4053807..4054250	+	147	117621050	-	AHA_3612	-	nudix hydrolase 1
3501	 69.27	+1	4054477..4055628	+	383	117620510	-	AHA_3613	-	chromate transport protein ChrA
3502	 65.39	0	4055709..4056101	-	130	117620213	msrB	AHA_3614	-	methionine-R-sulfoxide reductase
3503	 65.64	0	4056158..4058299	-	713	117619662	glgX-2	AHA_3615	-	glycogen debranching enzyme GlgX
3504	 61.94	0	4058299..4060476	-	725	117617687	glgB	AHA_3616	-	glycogen branching enzyme
3505	 63.33	0	4060559..4062835	-	758	117621052	malQ	AHA_3617	-	4-alpha-glucanotransferase
3506	 55.52	-1	4063095..4064090	+	331	117620869	gap-2	AHA_3618	-	glyceraldehyde-3-phosphate dehydrogenase, type I
3507	 65.05	0	4064206..4065072	+	288	117620178	-	AHA_3619	-	aldose 1-epimerase family protein
3508	 64.25	0	4065142..4066176	-	344	117619327	nadA	AHA_3620	-	quinolinate synthetase
3509	 63.96	0	4066356..4068461	+	701	117621406	-	AHA_3621	-	methyl-accepting chemotaxis protein
3510	 60.02	0	4070047..4070859	-	270	117618152	-	AHA_3636	-	TPR domain-containing protein
3511	 58.86	0	4071009..4071533	-	174	117617688	pal	AHA_3637	-	peptidoglycan-associated lipoprotein
3512	 58.82	0	4071583..4072908	-	441	117619070	tolB	AHA_3638	-	beta-propeller repeat-containing to-pal system protein TolB
3513	 58.25	0	4073003..4074166	-	387	117617662	tolA	AHA_3639	-	protein TolA
3514	 60.40	0	4074172..4074618	-	148	117619046	tolR	AHA_3640	-	protein TolR
3515	 57.83	0	4074618..4075307	-	229	117618590	tolQ	AHA_3641	-	protein TolQ
3516	 52.70	-1	4075297..4075704	-	135	117620441	-	AHA_3642	-	acyl-CoA thioester hydrolase YbgC
3517	 61.34	0	4075810..4076166	-	118	117619995	-	AHA_3643	-	protein YbgE
3518	 52.14	-1	4076108..4076224	-	38	117621339	-	AHA_3644	-	cyd operon protein YbgT
3519	 59.89	0	4076239..4077375	-	378	117618417	cydB-2	AHA_3645	-	cytochrome d ubiquinol oxidase, subunit II
3520	 58.51	0	4077388..4078944	-	518	117617801	cydA	AHA_3646	-	cytochrome d ubiquinol oxidase, subunit I
3521	 61.72	0	4079881..4080891	-	336	117617467	ruvB	AHA_3647	-	Holliday junction DNA helicase B
3522	 61.79	0	4080900..4081514	-	204	117618993	ruvA	AHA_3648	-	Holliday junction DNA helicase RuvA
3523	 62.79	0	4081753..4083762	+	669	117617741	-	AHA_3649	-	methyl-accepting chemotaxis protein
3524	 62.96	0	4083898..4085622	+	574	117619295	proS	AHA_3650	-	prolyl-tRNA synthetase
3525	 64.16	0	4085709..4086386	-	225	117618970	-	AHA_3651	-	short chain dehydrogenase/reductase family oxidoreductase
3526	 59.21	0	4086451..4087080	-	209	117620399	-	AHA_3652	-	hypothetical protein
3527	 63.49	0	4087176..4087616	-	146	117620105	-	AHA_3653	-	transporter
3528	 63.08	0	4087676..4088455	+	259	117619560	-	AHA_3654	-	enoyl-CoA hydratase/isomerase family protein
3529	 64.34	0	4088459..4088887	-	142	117620217	-	AHA_3655	-	hypothetical protein
3530	 63.81	0	4089178..4089843	+	221	117618631	-	AHA_3656	-	chloramphenicol acetyltransferase
3531	 62.71	0	4089895..4090602	-	235	117619438	-	AHA_3657	-	hypothetical protein
3532	 64.11	0	4090775..4092379	+	534	117617812	-	AHA_3658	-	periplasmic murein peptide-binding protein
3533	 63.81	0	4092384..4092803	+	139	117617837	-	AHA_3659	-	hypothetical protein
3534	 61.19	0	4092858..4093277	-	139	117618422	-	AHA_3660	-	hypothetical protein
3535	 61.00	0	4093296..4093595	-	99	117621083	-	AHA_3661	-	hypothetical protein
3536	 60.14	0	4093595..4094146	-	183	117619611	-	AHA_3662	-	integral membrane protein
3537	 67.52	0	4094187..4095011	-	274	117618903	proC	AHA_3663	-	pyrroline-5-carboxylate reductase
3538	 61.11	0	4095070..4095771	-	233	117619465	-	AHA_3664	-	hypothetical protein
3539	 61.06	0	4095811..4096845	+	344	117620239	-	AHA_3665	-	twitching mobility protein
3540	 63.96	0	4096874..4097983	+	369	117619622	-	AHA_3666	-	twitching motility protein PilU
3541	 61.63	0	4098015..4098788	+	257	117621094	-	AHA_3667	-	hypothetical protein
3542	 63.32	0	4098965..4100188	-	407	117620545	-	AHA_3668	-	ATP-dependent RNA helicase SrmB
3543	 57.95	0	4100317..4101027	+	236	117618463	-	AHA_3669	-	SmtA protein
3544	 62.77	0	4101219..4102526	+	435	117617883	brnQ-2	AHA_3670	-	branched-chain amino acid transport system II carrier protein
3545	 62.40	0	4102863..4104197	+	444	117619352	brnQ-3	AHA_3671	-	branched-chain amino acid transport system II carrier protein
3546	 58.33	0	4104268..4104531	-	87	117618774	-	AHA_3672	-	hypothetical protein
3547	 59.09	0	4104503..4104964	-	153	117618522	-	AHA_3673	-	chemotaxis protein CheX
3548	 55.99	-1	4104954..4105412	-	152	117620096	zur	AHA_3674	-	zinc uptake regulation protein
3549	 60.49	0	4105551..4106537	+	328	117618436	dusA	AHA_3675	-	tRNA-dihydrouridine synthase A
3550	 61.33	0	4106540..4106689	+	49	117618494	-	AHA_3676	-	hypothetical protein
3551	 59.62	0	4106764..4107189	-	141	117621226	-	AHA_3677	-	hypothetical protein
3552	 50.51	-2	4107291..4107587	-	98	117617689	-	AHA_3678	-	DNA-binding protein HU-alpha
3553	 57.76	0	4107905..4108387	+	160	117621366	algQ	AHA_3679	-	anti-RNA polymerase sigma 70 factor
3554	 57.22	0	4108489..4108869	+	126	117617946	-	AHA_3680	-	type IV pilus assembly protein PilZ
3555	 64.03	0	4108941..4110305	-	454	117619550	radA	AHA_3681	-	DNA repair protein RadA
3556	 63.41	0	4111911..4112678	+	255	117619089	-	AHA_3683	-	hypothetical protein
3557	 65.01	0	4112807..4113712	-	301	117619910	-	AHA_3684	-	esterase/lipase
3558	 66.37	0	4113762..4115468	-	568	117619146	-	AHA_3685	-	phosphoserine phosphatase
3559	 67.51	0	4115555..4117801	+	748	117619584	-	AHA_3686	-	histidine kinase-response regulator hybrid protein
3560	 59.14	0	4117871..4118587	-	238	117618320	deoD-2	AHA_3687	-	purine nucleoside phosphorylase
3561	 63.03	0	4118665..4119873	-	402	117618803	deoB	AHA_3688	-	phosphopentomutase
3562	 61.94	0	4119888..4121219	-	443	117618002	deoA	AHA_3689	-	thymidine phosphorylase
62.23	MEAN

5.38	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.