IslandPath Analysis: Aeromonas hydrophila subsp. hydrophila ATCC 7966



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 62.23   STD DEV: 5.38
Aeromonas hydrophila subsp. hydrophila ATCC 7966, complete genome - 1..4744448
4122 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
3428	 63.26	0	3981481..3982008	-	175	117619895	-	AHA_3540	-	hypothetical protein
3429	 63.95	0	3982010..3982450	-	146	117619506	-	AHA_3541	-	methylamine utilization protein-like protein
3430	 67.94	+1	3982752..3983534	-	260	117620844	-	AHA_3542	-	activator of (R)-2-hydroxyglutaryl-CoA dehydratase
3431	 62.95	0	3983544..3984620	-	358	117621255	-	AHA_3543	-	2-hydroxyglutaryl-CoA dehydratase, D-component
3432	 60.85	0	3984930..3985703	-	257	117617932	-	AHA_3544	-	ABC transporter, permease protein
3433	 60.68	0	3985700..3986617	-	305	117618393	-	AHA_3545	-	ABC transporter, ATP-binding protein
3434	 57.82	0	3986729..3987259	-	176	117621142	hpt	AHA_3546	-	hypoxanthine phosphoribosyltransferase
3435	 59.84	0	3987460..3988074	+	204	117617452	-	AHA_3547	-	LitR, transcriptional regulator
3436	 64.87	0	3988149..3988760	-	203	117620222	-	AHA_3548	-	3-octaprenyl-4-hydroxybenzoate decarboxylase UbiX
3437	 63.97	0	3988757..3990127	-	456	117620663	mpl	AHA_3549	-	UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase
3438	 59.13	0	3990306..3990836	+	176	117619370	ppa	AHA_3550	-	inorganic pyrophosphatase
3439	 63.43	0	3990862..3991170	-	102	117620001	-	AHA_3551	-	hypothetical protein
3440	 55.56	-1	3991145..3991243	+	32	117618375	-	AHA_3552	-	hypothetical protein
3441	 60.75	0	3991349..3992227	+	292	117618339	-	AHA_3553	-	hypothetical protein
3442	 57.27	0	3992485..3993027	+	180	117618888	-	AHA_3554	-	hypothetical protein
3443	 61.17	0	3993072..3993362	+	96	117619470	-	AHA_3555	-	hypothetical protein
3444	 63.84	0	3993398..3993964	+	188	117617843	-	AHA_3556	-	hypothetical protein
3445	 65.65	0	3993969..3994658	+	229	117617516	-	AHA_3557	-	ABC transporter, ATP-binding protein
3446	 66.91	0	3994652..3995899	+	415	117620022	-	AHA_3558	-	peptide ABC transporter permease
3447	 63.75	0	3995929..3996408	+	159	117619206	-	AHA_3559	-	hypothetical protein
3448	 68.22	+1	3996641..3997414	+	257	117619833	-	AHA_3560	-	hypothetical protein
3449	 62.92	0	3997678..3999306	+	542	117618231	-	AHA_3561	-	aerotaxis receptor Aer
3450	 47.25	-2	4000360..4001250	+	296	117620636	-	AHA_3562	-	alpha/beta fold family hydrolase
3451	 38.64	-2	4001682..4003133	+	483	117619734	-	AHA_3563	-	hypothetical protein
3452	 61.28	0	4003214..4003807	-	197	117620177	cysC	AHA_3564	-	adenylylsulfate kinase
3453	 64.29	0	4003954..4005678	-	574	117618900	-	AHA_3565	-	divalent anion:sodium symporter family protein
3454	 62.04	0	4005683..4007110	-	475	117619351	-	AHA_3566	-	sulfate adenylyltransferase subunit 1
3455	 60.40	0	4007135..4008043	-	302	117619880	-	AHA_3567	-	sulfate adenylyltransferase subunit 2
3456	 66.31	0	4008152..4009564	-	470	117620289	-	AHA_3568	-	siroheme synthase
3457	 62.87	0	4009762..4010682	+	306	117618677	-	AHA_3569	-	membrane protease subunits
3458	 68.64	+1	4010679..4011134	+	151	117619384	-	AHA_3570	-	nodulation efficiency family protein
3459	 62.53	0	4011217..4011627	-	136	117619018	-	AHA_3571	-	CBS domain-containing protein
3460	 64.00	0	4011781..4013691	+	636	117619670	-	AHA_3572	-	ABC transporter, ATP-binding protein
3461	 66.89	0	4013702..4014145	+	147	117619435	-	AHA_3573	-	hypothetical protein
3462	 62.69	0	4014139..4014993	+	284	117618505	-	AHA_3574	-	protein involved in external DNA uptake
3463	 68.49	+1	4015044..4015973	-	309	117618303	-	AHA_3575	-	transcriptional regulator
3464	 66.50	0	4016083..4016682	+	199	117617849	-	AHA_3576	-	acyl carrier protein phosphodiesterase
3465	 60.51	0	4016779..4017054	-	91	117619134	-	AHA_3577	-	hypothetical protein
3466	 62.53	0	4017172..4017534	+	120	117618514	-	AHA_3578	-	hypothetical protein
3467	 58.97	0	4017870..4018298	+	142	117617761	-	AHA_3579	-	glyoxalase family protein
3468	 34.70	-2	4018374..4020203	+	609	117617686	-	AHA_3580	-	ATP-dependent DNA helicase RecG
3469	 64.62	0	4020513..4021343	+	276	117620924	-	AHA_3581	-	hydrolase protein, putative
3470	 51.98	-1	4021377..4022486	-	369	117621393	-	AHA_3582	-	hypothetical protein
3471	 65.28	0	4022787..4024304	-	505	117617666	putP	AHA_3583	-	sodium/proline symporter
3472	 65.22	0	4024593..4025627	-	344	117619176	-	AHA_3584	-	LysM domain-containing protein
3473	 63.12	0	4025707..4026948	-	413	117618837	-	AHA_3585	-	mechanosensitive ion channel
3474	 64.00	0	4027082..4028281	-	399	117620506	ackA-2	AHA_3586	-	acetate kinase
3475	 64.97	0	4028456..4028926	-	156	117621530	-	AHA_3587	-	hypothetical protein
3476	 61.70	0	4029237..4030343	-	368	117620935	-	AHA_3588	-	acyltransferase family protein
3477	 69.15	+1	4030504..4032153	-	549	117620586	-	AHA_3589	-	multicopper oxidase
3478	 66.67	0	4032410..4033102	-	230	117618212	-	AHA_3590	-	aspartate racemase
3479	 67.17	0	4033247..4033837	-	196	117618326	-	AHA_3591	-	lysine exporter protein
3480	 66.95	0	4033899..4036052	+	717	117618129	-	AHA_3592	-	transcriptional regulator, GntR family/aminotransferase, classes I and II family protein
3481	 72.69	+1	4036095..4036559	+	154	117620361	-	AHA_3593	-	hypothetical protein
3482	 69.00	+1	4036620..4038719	+	699	117619800	-	AHA_3594	-	hypothetical protein
3483	 67.49	0	4038689..4039414	+	241	117621558	-	AHA_3596	-	hypothetical protein
3484	 66.12	0	4039411..4041048	-	545	117620913	-	AHA_3595	-	hypothetical protein
3485	 66.24	0	4039525..4041150	+	541	117620921	-	AHA_3597	-	hypothetical protein
3486	 66.06	0	4041171..4042484	-	437	117617544	-	AHA_3598	-	sodium-dependent symporter family protein
3487	 62.55	0	4042708..4043655	+	315	117619049	-	AHA_3599	-	hypothetical protein
3488	 66.74	0	4043656..4044969	-	437	117618719	-	AHA_3600	-	sodium-dependent transporter
3489	 63.57	0	4045184..4046023	-	279	117618721	-	AHA_3601	-	isopenicillin N synthase
3490	 63.12	0	4046232..4046795	+	187	117621257	-	AHA_3602	-	ATPase involved in DNA repair
3491	 66.06	0	4046848..4047669	-	273	117621361	-	AHA_3603	-	phosphatase YbhA
3492	 67.23	0	4047972..4049213	-	413	117618085	-	AHA_3604	-	MFS family transporter
3493	 65.86	0	4049380..4050000	+	206	117618662	-	AHA_3605	-	hypothetical protein
3494	 62.47	0	4050309..4050785	+	158	117618113	-	AHA_3606	-	bkd operon transcriptional regulator
3495	 62.89	0	4050875..4051192	-	105	117620605	-	AHA_3607	-	hypothetical protein
3496	 62.28	0	4051338..4051565	-	75	117620832	-	AHA_3608	-	hypothetical protein
3497	 60.81	0	4051599..4052093	-	164	117619751	-	AHA_3609	-	MarR family transcriptional regulator
3498	 65.20	0	4052137..4052613	+	158	117619580	-	AHA_3610	-	organic hydroperoxide reductase
3499	 67.06	0	4052696..4053700	+	334	117617806	-	AHA_3611	-	NADP-dependent oxidoreductase p1
3500	 65.32	0	4053807..4054250	+	147	117621050	-	AHA_3612	-	nudix hydrolase 1
3501	 69.27	+1	4054477..4055628	+	383	117620510	-	AHA_3613	-	chromate transport protein ChrA
3502	 65.39	0	4055709..4056101	-	130	117620213	msrB	AHA_3614	-	methionine-R-sulfoxide reductase
3503	 65.64	0	4056158..4058299	-	713	117619662	glgX-2	AHA_3615	-	glycogen debranching enzyme GlgX
3504	 61.94	0	4058299..4060476	-	725	117617687	glgB	AHA_3616	-	glycogen branching enzyme
3505	 63.33	0	4060559..4062835	-	758	117621052	malQ	AHA_3617	-	4-alpha-glucanotransferase
3506	 55.52	-1	4063095..4064090	+	331	117620869	gap-2	AHA_3618	-	glyceraldehyde-3-phosphate dehydrogenase, type I
3507	 65.05	0	4064206..4065072	+	288	117620178	-	AHA_3619	-	aldose 1-epimerase family protein
3508	 64.25	0	4065142..4066176	-	344	117619327	nadA	AHA_3620	-	quinolinate synthetase
3509	 63.96	0	4066356..4068461	+	701	117621406	-	AHA_3621	-	methyl-accepting chemotaxis protein
3510	 60.02	0	4070047..4070859	-	270	117618152	-	AHA_3636	-	TPR domain-containing protein
3511	 58.86	0	4071009..4071533	-	174	117617688	pal	AHA_3637	-	peptidoglycan-associated lipoprotein
3512	 58.82	0	4071583..4072908	-	441	117619070	tolB	AHA_3638	-	beta-propeller repeat-containing to-pal system protein TolB
3513	 58.25	0	4073003..4074166	-	387	117617662	tolA	AHA_3639	-	protein TolA
3514	 60.40	0	4074172..4074618	-	148	117619046	tolR	AHA_3640	-	protein TolR
3515	 57.83	0	4074618..4075307	-	229	117618590	tolQ	AHA_3641	-	protein TolQ
3516	 52.70	-1	4075297..4075704	-	135	117620441	-	AHA_3642	-	acyl-CoA thioester hydrolase YbgC
3517	 61.34	0	4075810..4076166	-	118	117619995	-	AHA_3643	-	protein YbgE
3518	 52.14	-1	4076108..4076224	-	38	117621339	-	AHA_3644	-	cyd operon protein YbgT
3519	 59.89	0	4076239..4077375	-	378	117618417	cydB-2	AHA_3645	-	cytochrome d ubiquinol oxidase, subunit II
3520	 58.51	0	4077388..4078944	-	518	117617801	cydA	AHA_3646	-	cytochrome d ubiquinol oxidase, subunit I
3521	 61.72	0	4079881..4080891	-	336	117617467	ruvB	AHA_3647	-	Holliday junction DNA helicase B
3522	 61.79	0	4080900..4081514	-	204	117618993	ruvA	AHA_3648	-	Holliday junction DNA helicase RuvA
3523	 62.79	0	4081753..4083762	+	669	117617741	-	AHA_3649	-	methyl-accepting chemotaxis protein
3524	 62.96	0	4083898..4085622	+	574	117619295	proS	AHA_3650	-	prolyl-tRNA synthetase
3525	 64.16	0	4085709..4086386	-	225	117618970	-	AHA_3651	-	short chain dehydrogenase/reductase family oxidoreductase
3526	 59.21	0	4086451..4087080	-	209	117620399	-	AHA_3652	-	hypothetical protein
3527	 63.49	0	4087176..4087616	-	146	117620105	-	AHA_3653	-	transporter
62.23	MEAN

5.38	STD DEV




Last Updated: Dec 04, 2008