IslandPathversion 1.0

IslandPath Analysis: Aeromonas hydrophila subsp. hydrophila ATCC 7966



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 62.23 STD DEV: 5.38
Aeromonas hydrophila subsp. hydrophila ATCC 7966, complete genome - 1..4744448
4122 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
3407	 64.87	0	3958459..3959853	-	464	117619175	-	AHA_3519	-	chloride channel protein
3408	 64.80	0	3960076..3961362	+	428	117619735	hemL	AHA_3520	-	glutamate-1-semialdehyde-2,1-aminomutase
3409	 62.75	0	3961572..3962387	+	271	117618477	-	AHA_3521	-	hypothetical protein
3410	 63.46	0	3962448..3963350	-	300	117618811	-	AHA_3522	-	hypothetical protein
3411	 65.70	0	3963607..3964329	-	240	117621040	-	AHA_3523	-	PAP2 family protein
3412	 64.73	0	3964517..3965032	+	171	117618120	-	AHA_3524	-	hypothetical protein
3413	 63.63	0	3965108..3966688	-	526	117617783	-	AHA_3525	-	response regulator
3414	 63.72	0	3966803..3967684	-	293	117619015	-	AHA_3526	-	LysR family transcriptional regulator
3415	 59.35	0	3967841..3968305	+	154	117618589	-	AHA_3527	-	SMR family multidrug efflux pump
3416	 63.55	0	3968293..3968613	+	106	117618209	-	AHA_3528	-	SMR family multidrug efflux pump
3417	 67.41	0	3968713..3969114	-	133	117617482	-	AHA_3529	-	glyoxylase I family protein
3418	 65.76	0	3969157..3971478	-	773	117619028	mrcB	AHA_3530	-	penicillin-binding protein 1B
3419	 69.00	+1	3971730..3974900	-	1056	117619450	hrpB	AHA_3531	-	ATP-dependent helicase HrpB
3420	 70.37	+1	3974322..3974861	+	179	117621020	-	AHA_3532	-	2'-5' RNA ligase
3421	 59.68	0	3974904..3975647	+	247	117617592	sfsA	AHA_3533	-	sugar fermentation stimulation protein
3422	 55.56	-1	3975767..3976216	+	149	117619241	dksA	AHA_3534	-	RNA polymerase-binding protein DksA
3423	 67.44	0	3976336..3977238	+	300	117619247	-	AHA_3535	-	glutamyl-Q tRNA(Asp) synthetase
3424	 64.20	0	3977560..3979059	+	499	117620345	-	AHA_3536	-	poly(A) polymerase
3425	 62.16	0	3979071..3979580	+	169	117619770	folK-1	AHA_3537	-	2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase
3426	 63.65	0	3979577..3980371	+	264	117619024	panB	AHA_3538	-	3-methyl-2-oxobutanoate hydroxymethyltransferase
3427	 65.62	0	3980559..3981416	+	285	117618576	panC	AHA_3539	-	pantoate--beta-alanine ligase
3428	 63.26	0	3981481..3982008	-	175	117619895	-	AHA_3540	-	hypothetical protein
3429	 63.95	0	3982010..3982450	-	146	117619506	-	AHA_3541	-	methylamine utilization protein-like protein
3430	 67.94	+1	3982752..3983534	-	260	117620844	-	AHA_3542	-	activator of (R)-2-hydroxyglutaryl-CoA dehydratase
3431	 62.95	0	3983544..3984620	-	358	117621255	-	AHA_3543	-	2-hydroxyglutaryl-CoA dehydratase, D-component
3432	 60.85	0	3984930..3985703	-	257	117617932	-	AHA_3544	-	ABC transporter, permease protein
3433	 60.68	0	3985700..3986617	-	305	117618393	-	AHA_3545	-	ABC transporter, ATP-binding protein
3434	 57.82	0	3986729..3987259	-	176	117621142	hpt	AHA_3546	-	hypoxanthine phosphoribosyltransferase
3435	 59.84	0	3987460..3988074	+	204	117617452	-	AHA_3547	-	LitR, transcriptional regulator
3436	 64.87	0	3988149..3988760	-	203	117620222	-	AHA_3548	-	3-octaprenyl-4-hydroxybenzoate decarboxylase UbiX
3437	 63.97	0	3988757..3990127	-	456	117620663	mpl	AHA_3549	-	UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase
3438	 59.13	0	3990306..3990836	+	176	117619370	ppa	AHA_3550	-	inorganic pyrophosphatase
3439	 63.43	0	3990862..3991170	-	102	117620001	-	AHA_3551	-	hypothetical protein
3440	 55.56	-1	3991145..3991243	+	32	117618375	-	AHA_3552	-	hypothetical protein
3441	 60.75	0	3991349..3992227	+	292	117618339	-	AHA_3553	-	hypothetical protein
3442	 57.27	0	3992485..3993027	+	180	117618888	-	AHA_3554	-	hypothetical protein
3443	 61.17	0	3993072..3993362	+	96	117619470	-	AHA_3555	-	hypothetical protein
3444	 63.84	0	3993398..3993964	+	188	117617843	-	AHA_3556	-	hypothetical protein
3445	 65.65	0	3993969..3994658	+	229	117617516	-	AHA_3557	-	ABC transporter, ATP-binding protein
3446	 66.91	0	3994652..3995899	+	415	117620022	-	AHA_3558	-	peptide ABC transporter permease
3447	 63.75	0	3995929..3996408	+	159	117619206	-	AHA_3559	-	hypothetical protein
3448	 68.22	+1	3996641..3997414	+	257	117619833	-	AHA_3560	-	hypothetical protein
3449	 62.92	0	3997678..3999306	+	542	117618231	-	AHA_3561	-	aerotaxis receptor Aer
3450	 47.25	-2	4000360..4001250	+	296	117620636	-	AHA_3562	-	alpha/beta fold family hydrolase
3451	 38.64	-2	4001682..4003133	+	483	117619734	-	AHA_3563	-	hypothetical protein
3452	 61.28	0	4003214..4003807	-	197	117620177	cysC	AHA_3564	-	adenylylsulfate kinase
3453	 64.29	0	4003954..4005678	-	574	117618900	-	AHA_3565	-	divalent anion:sodium symporter family protein
3454	 62.04	0	4005683..4007110	-	475	117619351	-	AHA_3566	-	sulfate adenylyltransferase subunit 1
3455	 60.40	0	4007135..4008043	-	302	117619880	-	AHA_3567	-	sulfate adenylyltransferase subunit 2
3456	 66.31	0	4008152..4009564	-	470	117620289	-	AHA_3568	-	siroheme synthase
3457	 62.87	0	4009762..4010682	+	306	117618677	-	AHA_3569	-	membrane protease subunits
3458	 68.64	+1	4010679..4011134	+	151	117619384	-	AHA_3570	-	nodulation efficiency family protein
3459	 62.53	0	4011217..4011627	-	136	117619018	-	AHA_3571	-	CBS domain-containing protein
3460	 64.00	0	4011781..4013691	+	636	117619670	-	AHA_3572	-	ABC transporter, ATP-binding protein
3461	 66.89	0	4013702..4014145	+	147	117619435	-	AHA_3573	-	hypothetical protein
3462	 62.69	0	4014139..4014993	+	284	117618505	-	AHA_3574	-	protein involved in external DNA uptake
3463	 68.49	+1	4015044..4015973	-	309	117618303	-	AHA_3575	-	transcriptional regulator
3464	 66.50	0	4016083..4016682	+	199	117617849	-	AHA_3576	-	acyl carrier protein phosphodiesterase
3465	 60.51	0	4016779..4017054	-	91	117619134	-	AHA_3577	-	hypothetical protein
3466	 62.53	0	4017172..4017534	+	120	117618514	-	AHA_3578	-	hypothetical protein
3467	 58.97	0	4017870..4018298	+	142	117617761	-	AHA_3579	-	glyoxalase family protein
3468	 34.70	-2	4018374..4020203	+	609	117617686	-	AHA_3580	-	ATP-dependent DNA helicase RecG
3469	 64.62	0	4020513..4021343	+	276	117620924	-	AHA_3581	-	hydrolase protein, putative
3470	 51.98	-1	4021377..4022486	-	369	117621393	-	AHA_3582	-	hypothetical protein
3471	 65.28	0	4022787..4024304	-	505	117617666	putP	AHA_3583	-	sodium/proline symporter
3472	 65.22	0	4024593..4025627	-	344	117619176	-	AHA_3584	-	LysM domain-containing protein
3473	 63.12	0	4025707..4026948	-	413	117618837	-	AHA_3585	-	mechanosensitive ion channel
3474	 64.00	0	4027082..4028281	-	399	117620506	ackA-2	AHA_3586	-	acetate kinase
3475	 64.97	0	4028456..4028926	-	156	117621530	-	AHA_3587	-	hypothetical protein
3476	 61.70	0	4029237..4030343	-	368	117620935	-	AHA_3588	-	acyltransferase family protein
3477	 69.15	+1	4030504..4032153	-	549	117620586	-	AHA_3589	-	multicopper oxidase
3478	 66.67	0	4032410..4033102	-	230	117618212	-	AHA_3590	-	aspartate racemase
3479	 67.17	0	4033247..4033837	-	196	117618326	-	AHA_3591	-	lysine exporter protein
3480	 66.95	0	4033899..4036052	+	717	117618129	-	AHA_3592	-	transcriptional regulator, GntR family/aminotransferase, classes I and II family protein
3481	 72.69	+1	4036095..4036559	+	154	117620361	-	AHA_3593	-	hypothetical protein
3482	 69.00	+1	4036620..4038719	+	699	117619800	-	AHA_3594	-	hypothetical protein
3483	 67.49	0	4038689..4039414	+	241	117621558	-	AHA_3596	-	hypothetical protein
3484	 66.12	0	4039411..4041048	-	545	117620913	-	AHA_3595	-	hypothetical protein
3485	 66.24	0	4039525..4041150	+	541	117620921	-	AHA_3597	-	hypothetical protein
3486	 66.06	0	4041171..4042484	-	437	117617544	-	AHA_3598	-	sodium-dependent symporter family protein
3487	 62.55	0	4042708..4043655	+	315	117619049	-	AHA_3599	-	hypothetical protein
3488	 66.74	0	4043656..4044969	-	437	117618719	-	AHA_3600	-	sodium-dependent transporter
3489	 63.57	0	4045184..4046023	-	279	117618721	-	AHA_3601	-	isopenicillin N synthase
3490	 63.12	0	4046232..4046795	+	187	117621257	-	AHA_3602	-	ATPase involved in DNA repair
3491	 66.06	0	4046848..4047669	-	273	117621361	-	AHA_3603	-	phosphatase YbhA
3492	 67.23	0	4047972..4049213	-	413	117618085	-	AHA_3604	-	MFS family transporter
3493	 65.86	0	4049380..4050000	+	206	117618662	-	AHA_3605	-	hypothetical protein
3494	 62.47	0	4050309..4050785	+	158	117618113	-	AHA_3606	-	bkd operon transcriptional regulator
3495	 62.89	0	4050875..4051192	-	105	117620605	-	AHA_3607	-	hypothetical protein
3496	 62.28	0	4051338..4051565	-	75	117620832	-	AHA_3608	-	hypothetical protein
3497	 60.81	0	4051599..4052093	-	164	117619751	-	AHA_3609	-	MarR family transcriptional regulator
3498	 65.20	0	4052137..4052613	+	158	117619580	-	AHA_3610	-	organic hydroperoxide reductase
3499	 67.06	0	4052696..4053700	+	334	117617806	-	AHA_3611	-	NADP-dependent oxidoreductase p1
3500	 65.32	0	4053807..4054250	+	147	117621050	-	AHA_3612	-	nudix hydrolase 1
3501	 69.27	+1	4054477..4055628	+	383	117620510	-	AHA_3613	-	chromate transport protein ChrA
3502	 65.39	0	4055709..4056101	-	130	117620213	msrB	AHA_3614	-	methionine-R-sulfoxide reductase
3503	 65.64	0	4056158..4058299	-	713	117619662	glgX-2	AHA_3615	-	glycogen debranching enzyme GlgX
3504	 61.94	0	4058299..4060476	-	725	117617687	glgB	AHA_3616	-	glycogen branching enzyme
3505	 63.33	0	4060559..4062835	-	758	117621052	malQ	AHA_3617	-	4-alpha-glucanotransferase
3506	 55.52	-1	4063095..4064090	+	331	117620869	gap-2	AHA_3618	-	glyceraldehyde-3-phosphate dehydrogenase, type I
62.23	MEAN

5.38	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.