IslandPath Analysis: Aeromonas hydrophila subsp. hydrophila ATCC 7966



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 62.23   STD DEV: 5.38
Aeromonas hydrophila subsp. hydrophila ATCC 7966, complete genome - 1..4744448
4122 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
3402	 57.04	0	3949262..3950227	+	321	117619221	-	AHA_3510	-	tRNA-dihydrouridine synthase B
3403	 55.22	-1	3950253..3950549	+	98	117617872	fis	AHA_3511	-	DNA-binding protein Fis
3404	 61.45	0	3950619..3951251	-	210	117618459	-	AHA_3512	-	amino acid transporter LysE
3405	 54.07	-1	3957236..3957640	-	134	117620034	-	AHA_3517	-	iron-sulfur cluster insertion protein ErpA
3406	 62.21	0	3957677..3958372	-	231	117620607	-	AHA_3518	-	hypothetical protein
3407	 64.87	0	3958459..3959853	-	464	117619175	-	AHA_3519	-	chloride channel protein
3408	 64.80	0	3960076..3961362	+	428	117619735	hemL	AHA_3520	-	glutamate-1-semialdehyde-2,1-aminomutase
3409	 62.75	0	3961572..3962387	+	271	117618477	-	AHA_3521	-	hypothetical protein
3410	 63.46	0	3962448..3963350	-	300	117618811	-	AHA_3522	-	hypothetical protein
3411	 65.70	0	3963607..3964329	-	240	117621040	-	AHA_3523	-	PAP2 family protein
3412	 64.73	0	3964517..3965032	+	171	117618120	-	AHA_3524	-	hypothetical protein
3413	 63.63	0	3965108..3966688	-	526	117617783	-	AHA_3525	-	response regulator
3414	 63.72	0	3966803..3967684	-	293	117619015	-	AHA_3526	-	LysR family transcriptional regulator
3415	 59.35	0	3967841..3968305	+	154	117618589	-	AHA_3527	-	SMR family multidrug efflux pump
3416	 63.55	0	3968293..3968613	+	106	117618209	-	AHA_3528	-	SMR family multidrug efflux pump
3417	 67.41	0	3968713..3969114	-	133	117617482	-	AHA_3529	-	glyoxylase I family protein
3418	 65.76	0	3969157..3971478	-	773	117619028	mrcB	AHA_3530	-	penicillin-binding protein 1B
3419	 69.00	+1	3971730..3974900	-	1056	117619450	hrpB	AHA_3531	-	ATP-dependent helicase HrpB
3420	 70.37	+1	3974322..3974861	+	179	117621020	-	AHA_3532	-	2'-5' RNA ligase
3421	 59.68	0	3974904..3975647	+	247	117617592	sfsA	AHA_3533	-	sugar fermentation stimulation protein
3422	 55.56	-1	3975767..3976216	+	149	117619241	dksA	AHA_3534	-	RNA polymerase-binding protein DksA
3423	 67.44	0	3976336..3977238	+	300	117619247	-	AHA_3535	-	glutamyl-Q tRNA(Asp) synthetase
3424	 64.20	0	3977560..3979059	+	499	117620345	-	AHA_3536	-	poly(A) polymerase
3425	 62.16	0	3979071..3979580	+	169	117619770	folK-1	AHA_3537	-	2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase
3426	 63.65	0	3979577..3980371	+	264	117619024	panB	AHA_3538	-	3-methyl-2-oxobutanoate hydroxymethyltransferase
3427	 65.62	0	3980559..3981416	+	285	117618576	panC	AHA_3539	-	pantoate--beta-alanine ligase
3428	 63.26	0	3981481..3982008	-	175	117619895	-	AHA_3540	-	hypothetical protein
3429	 63.95	0	3982010..3982450	-	146	117619506	-	AHA_3541	-	methylamine utilization protein-like protein
3430	 67.94	+1	3982752..3983534	-	260	117620844	-	AHA_3542	-	activator of (R)-2-hydroxyglutaryl-CoA dehydratase
3431	 62.95	0	3983544..3984620	-	358	117621255	-	AHA_3543	-	2-hydroxyglutaryl-CoA dehydratase, D-component
3432	 60.85	0	3984930..3985703	-	257	117617932	-	AHA_3544	-	ABC transporter, permease protein
3433	 60.68	0	3985700..3986617	-	305	117618393	-	AHA_3545	-	ABC transporter, ATP-binding protein
3434	 57.82	0	3986729..3987259	-	176	117621142	hpt	AHA_3546	-	hypoxanthine phosphoribosyltransferase
3435	 59.84	0	3987460..3988074	+	204	117617452	-	AHA_3547	-	LitR, transcriptional regulator
3436	 64.87	0	3988149..3988760	-	203	117620222	-	AHA_3548	-	3-octaprenyl-4-hydroxybenzoate decarboxylase UbiX
3437	 63.97	0	3988757..3990127	-	456	117620663	mpl	AHA_3549	-	UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase
3438	 59.13	0	3990306..3990836	+	176	117619370	ppa	AHA_3550	-	inorganic pyrophosphatase
3439	 63.43	0	3990862..3991170	-	102	117620001	-	AHA_3551	-	hypothetical protein
3440	 55.56	-1	3991145..3991243	+	32	117618375	-	AHA_3552	-	hypothetical protein
3441	 60.75	0	3991349..3992227	+	292	117618339	-	AHA_3553	-	hypothetical protein
3442	 57.27	0	3992485..3993027	+	180	117618888	-	AHA_3554	-	hypothetical protein
3443	 61.17	0	3993072..3993362	+	96	117619470	-	AHA_3555	-	hypothetical protein
3444	 63.84	0	3993398..3993964	+	188	117617843	-	AHA_3556	-	hypothetical protein
3445	 65.65	0	3993969..3994658	+	229	117617516	-	AHA_3557	-	ABC transporter, ATP-binding protein
3446	 66.91	0	3994652..3995899	+	415	117620022	-	AHA_3558	-	peptide ABC transporter permease
3447	 63.75	0	3995929..3996408	+	159	117619206	-	AHA_3559	-	hypothetical protein
3448	 68.22	+1	3996641..3997414	+	257	117619833	-	AHA_3560	-	hypothetical protein
3449	 62.92	0	3997678..3999306	+	542	117618231	-	AHA_3561	-	aerotaxis receptor Aer
3450	 47.25	-2	4000360..4001250	+	296	117620636	-	AHA_3562	-	alpha/beta fold family hydrolase
3451	 38.64	-2	4001682..4003133	+	483	117619734	-	AHA_3563	-	hypothetical protein
3452	 61.28	0	4003214..4003807	-	197	117620177	cysC	AHA_3564	-	adenylylsulfate kinase
3453	 64.29	0	4003954..4005678	-	574	117618900	-	AHA_3565	-	divalent anion:sodium symporter family protein
3454	 62.04	0	4005683..4007110	-	475	117619351	-	AHA_3566	-	sulfate adenylyltransferase subunit 1
3455	 60.40	0	4007135..4008043	-	302	117619880	-	AHA_3567	-	sulfate adenylyltransferase subunit 2
3456	 66.31	0	4008152..4009564	-	470	117620289	-	AHA_3568	-	siroheme synthase
3457	 62.87	0	4009762..4010682	+	306	117618677	-	AHA_3569	-	membrane protease subunits
3458	 68.64	+1	4010679..4011134	+	151	117619384	-	AHA_3570	-	nodulation efficiency family protein
3459	 62.53	0	4011217..4011627	-	136	117619018	-	AHA_3571	-	CBS domain-containing protein
3460	 64.00	0	4011781..4013691	+	636	117619670	-	AHA_3572	-	ABC transporter, ATP-binding protein
3461	 66.89	0	4013702..4014145	+	147	117619435	-	AHA_3573	-	hypothetical protein
3462	 62.69	0	4014139..4014993	+	284	117618505	-	AHA_3574	-	protein involved in external DNA uptake
3463	 68.49	+1	4015044..4015973	-	309	117618303	-	AHA_3575	-	transcriptional regulator
3464	 66.50	0	4016083..4016682	+	199	117617849	-	AHA_3576	-	acyl carrier protein phosphodiesterase
3465	 60.51	0	4016779..4017054	-	91	117619134	-	AHA_3577	-	hypothetical protein
3466	 62.53	0	4017172..4017534	+	120	117618514	-	AHA_3578	-	hypothetical protein
3467	 58.97	0	4017870..4018298	+	142	117617761	-	AHA_3579	-	glyoxalase family protein
3468	 34.70	-2	4018374..4020203	+	609	117617686	-	AHA_3580	-	ATP-dependent DNA helicase RecG
3469	 64.62	0	4020513..4021343	+	276	117620924	-	AHA_3581	-	hydrolase protein, putative
3470	 51.98	-1	4021377..4022486	-	369	117621393	-	AHA_3582	-	hypothetical protein
3471	 65.28	0	4022787..4024304	-	505	117617666	putP	AHA_3583	-	sodium/proline symporter
3472	 65.22	0	4024593..4025627	-	344	117619176	-	AHA_3584	-	LysM domain-containing protein
3473	 63.12	0	4025707..4026948	-	413	117618837	-	AHA_3585	-	mechanosensitive ion channel
3474	 64.00	0	4027082..4028281	-	399	117620506	ackA-2	AHA_3586	-	acetate kinase
3475	 64.97	0	4028456..4028926	-	156	117621530	-	AHA_3587	-	hypothetical protein
3476	 61.70	0	4029237..4030343	-	368	117620935	-	AHA_3588	-	acyltransferase family protein
3477	 69.15	+1	4030504..4032153	-	549	117620586	-	AHA_3589	-	multicopper oxidase
3478	 66.67	0	4032410..4033102	-	230	117618212	-	AHA_3590	-	aspartate racemase
3479	 67.17	0	4033247..4033837	-	196	117618326	-	AHA_3591	-	lysine exporter protein
3480	 66.95	0	4033899..4036052	+	717	117618129	-	AHA_3592	-	transcriptional regulator, GntR family/aminotransferase, classes I and II family protein
3481	 72.69	+1	4036095..4036559	+	154	117620361	-	AHA_3593	-	hypothetical protein
3482	 69.00	+1	4036620..4038719	+	699	117619800	-	AHA_3594	-	hypothetical protein
3483	 67.49	0	4038689..4039414	+	241	117621558	-	AHA_3596	-	hypothetical protein
3484	 66.12	0	4039411..4041048	-	545	117620913	-	AHA_3595	-	hypothetical protein
3485	 66.24	0	4039525..4041150	+	541	117620921	-	AHA_3597	-	hypothetical protein
3486	 66.06	0	4041171..4042484	-	437	117617544	-	AHA_3598	-	sodium-dependent symporter family protein
3487	 62.55	0	4042708..4043655	+	315	117619049	-	AHA_3599	-	hypothetical protein
3488	 66.74	0	4043656..4044969	-	437	117618719	-	AHA_3600	-	sodium-dependent transporter
3489	 63.57	0	4045184..4046023	-	279	117618721	-	AHA_3601	-	isopenicillin N synthase
3490	 63.12	0	4046232..4046795	+	187	117621257	-	AHA_3602	-	ATPase involved in DNA repair
3491	 66.06	0	4046848..4047669	-	273	117621361	-	AHA_3603	-	phosphatase YbhA
3492	 67.23	0	4047972..4049213	-	413	117618085	-	AHA_3604	-	MFS family transporter
3493	 65.86	0	4049380..4050000	+	206	117618662	-	AHA_3605	-	hypothetical protein
3494	 62.47	0	4050309..4050785	+	158	117618113	-	AHA_3606	-	bkd operon transcriptional regulator
3495	 62.89	0	4050875..4051192	-	105	117620605	-	AHA_3607	-	hypothetical protein
3496	 62.28	0	4051338..4051565	-	75	117620832	-	AHA_3608	-	hypothetical protein
3497	 60.81	0	4051599..4052093	-	164	117619751	-	AHA_3609	-	MarR family transcriptional regulator
3498	 65.20	0	4052137..4052613	+	158	117619580	-	AHA_3610	-	organic hydroperoxide reductase
3499	 67.06	0	4052696..4053700	+	334	117617806	-	AHA_3611	-	NADP-dependent oxidoreductase p1
3500	 65.32	0	4053807..4054250	+	147	117621050	-	AHA_3612	-	nudix hydrolase 1
3501	 69.27	+1	4054477..4055628	+	383	117620510	-	AHA_3613	-	chromate transport protein ChrA
62.23	MEAN

5.38	STD DEV




Last Updated: Dec 04, 2008
      
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