IslandPathversion 1.0

IslandPath Analysis: Aeromonas hydrophila subsp. hydrophila ATCC 7966



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 62.23 STD DEV: 5.38
Aeromonas hydrophila subsp. hydrophila ATCC 7966, complete genome - 1..4744448
4122 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
3361	 70.40	+1	3887567..3888370	+	267	117619845	-	AHA_3467	-	AraC family transcriptional regulator
3362	 61.87	0	3888431..3888889	-	152	117620572	-	AHA_3468	-	hypothetical protein
3363	 66.11	0	3889097..3891070	+	657	117620272	-	AHA_3469	-	sensory box protein
3364	 58.78	0	3891139..3891645	-	168	117619831	-	AHA_3470	-	hypothetical protein
3365	 64.21	0	3891909..3894185	+	758	117619616	-	AHA_3471	-	immune inhibitor A
3366	 56.30	-1	3894569..3894703	-	44	117619216	-	AHA_3474	-	hypothetical protein
3367	 66.82	0	3894929..3896206	+	425	117618537	-	AHA_3475	-	proline iminopeptidase
3368	 67.57	0	3896306..3899866	+	1186	117618358	-	AHA_3476	-	ABC transporter, ATP-binding protein
3369	 55.56	-1	3899922..3900164	-	80	117617534	-	AHA_3477	-	hypothetical protein
3370	 68.28	+1	3900246..3901421	-	391	117621064	-	AHA_3478	-	extracellular alkaline serine protease
3371	 65.89	0	3901541..3902833	-	430	117621403	-	AHA_3479	-	putative thiosulfate sulfurtransferase
3372	 64.52	0	3902862..3903794	-	310	117618467	-	AHA_3480	-	thermolabile glutaminase
3373	 61.26	0	3903907..3904239	-	110	117618679	-	AHA_3481	-	hypothetical protein
3374	 62.50	0	3904254..3904949	-	231	117619178	trmB	AHA_3482	-	tRNA (guanine-N(7)-)-methyltransferase
3375	 65.45	0	3905316..3906383	+	355	117619828	-	AHA_3483	-	aminopeptidase Y
3376	 64.97	0	3906566..3907747	+	393	117620769	-	AHA_3484	-	aminotransferase, classes I and II
3377	 64.12	0	3907812..3909344	-	510	117620916	-	AHA_3485	-	EAL domain-containing protein
3378	 65.56	0	3909647..3910552	+	301	117621434	-	AHA_3486	-	hypothetical protein
3379	 68.38	+1	3910646..3913093	-	815	117618473	-	AHA_3487	-	ABC-type transport system, permease component
3380	 66.80	0	3913090..3913815	-	241	117618524	-	AHA_3488	-	ABC transporter, ATP-binding protein
3381	 62.17	0	3913814..3914413	+	199	117619110	-	AHA_3489	-	acyl-CoA thioesterase I
3382	 59.79	0	3914497..3915441	-	314	117617728	-	AHA_3490	-	chemotaxis protein CheV
3383	 62.61	0	3915737..3930880	-	5047	117618784	-	AHA_3491	-	hypothetical protein
3384	 63.48	0	3931109..3932770	-	553	117620516	-	AHA_3492	-	hypothetical protein
3385	 58.81	0	3932889..3933524	-	211	117619951	-	AHA_3493	-	hemolysin III
3386	 65.01	0	3933748..3935253	+	501	117619706	-	AHA_3494	-	group II decarboxylase
3387	 53.80	-1	3935358..3935909	+	183	117620603	ispZ	AHA_3495	-	intracellular septation protein A
3388	 64.65	0	3935935..3936231	+	98	117617855	-	AHA_3496	-	YciI-like protein
3389	 63.89	0	3936313..3937104	-	263	117619469	cysQ-2	AHA_3497	-	3'(2'),5'-bisphosphate nucleotidase
3390	 60.44	0	3937251..3937571	+	106	117618885	-	AHA_3498	-	ComEA protein
3391	 59.51	0	3937685..3938578	+	297	117618873	galU	AHA_3499	-	UTP-glucose-1-phosphate uridylyltransferase
3392	 60.87	0	3938792..3940189	+	465	117618661	-	AHA_3500	-	dipeptide/tripeptide permease
3393	 60.19	0	3940263..3941234	-	323	117619260	-	AHA_3501	-	response regulator receiver domain-containing protein
3394	 63.16	0	3941560..3943155	-	531	117617501	-	AHA_3502	-	hypothetical protein
3395	 65.49	0	3941575..3942252	+	225	117618099	-	AHA_3503	-	hypothetical protein
3396	 61.64	0	3942322..3943176	+	284	117620088	-	AHA_3504	-	DNA replication protein, putative
3397	 67.14	0	3943305..3943940	+	211	117621456	-	AHA_3505	-	NAD-dependent epimerase/dehydratase family protein
3398	 65.58	0	3944051..3945247	-	398	117619862	-	AHA_3506	-	ABC-type multidrug transport system, permease component
3399	 65.17	0	3945351..3946487	-	378	117620273	-	AHA_3507	-	ABC-type multidrug transport system, permease component
3400	 65.77	0	3946487..3947491	-	334	117618109	-	AHA_3508	-	membrane-fusion protein
3401	 63.58	0	3947565..3948923	-	452	117618828	-	AHA_3509	-	outer membrane efflux protein
3402	 57.04	0	3949262..3950227	+	321	117619221	-	AHA_3510	-	tRNA-dihydrouridine synthase B
3403	 55.22	-1	3950253..3950549	+	98	117617872	fis	AHA_3511	-	DNA-binding protein Fis
3404	 61.45	0	3950619..3951251	-	210	117618459	-	AHA_3512	-	amino acid transporter LysE
3405	 54.07	-1	3957236..3957640	-	134	117620034	-	AHA_3517	-	iron-sulfur cluster insertion protein ErpA
3406	 62.21	0	3957677..3958372	-	231	117620607	-	AHA_3518	-	hypothetical protein
3407	 64.87	0	3958459..3959853	-	464	117619175	-	AHA_3519	-	chloride channel protein
3408	 64.80	0	3960076..3961362	+	428	117619735	hemL	AHA_3520	-	glutamate-1-semialdehyde-2,1-aminomutase
3409	 62.75	0	3961572..3962387	+	271	117618477	-	AHA_3521	-	hypothetical protein
3410	 63.46	0	3962448..3963350	-	300	117618811	-	AHA_3522	-	hypothetical protein
3411	 65.70	0	3963607..3964329	-	240	117621040	-	AHA_3523	-	PAP2 family protein
3412	 64.73	0	3964517..3965032	+	171	117618120	-	AHA_3524	-	hypothetical protein
3413	 63.63	0	3965108..3966688	-	526	117617783	-	AHA_3525	-	response regulator
3414	 63.72	0	3966803..3967684	-	293	117619015	-	AHA_3526	-	LysR family transcriptional regulator
3415	 59.35	0	3967841..3968305	+	154	117618589	-	AHA_3527	-	SMR family multidrug efflux pump
3416	 63.55	0	3968293..3968613	+	106	117618209	-	AHA_3528	-	SMR family multidrug efflux pump
3417	 67.41	0	3968713..3969114	-	133	117617482	-	AHA_3529	-	glyoxylase I family protein
3418	 65.76	0	3969157..3971478	-	773	117619028	mrcB	AHA_3530	-	penicillin-binding protein 1B
3419	 69.00	+1	3971730..3974900	-	1056	117619450	hrpB	AHA_3531	-	ATP-dependent helicase HrpB
3420	 70.37	+1	3974322..3974861	+	179	117621020	-	AHA_3532	-	2'-5' RNA ligase
3421	 59.68	0	3974904..3975647	+	247	117617592	sfsA	AHA_3533	-	sugar fermentation stimulation protein
3422	 55.56	-1	3975767..3976216	+	149	117619241	dksA	AHA_3534	-	RNA polymerase-binding protein DksA
3423	 67.44	0	3976336..3977238	+	300	117619247	-	AHA_3535	-	glutamyl-Q tRNA(Asp) synthetase
3424	 64.20	0	3977560..3979059	+	499	117620345	-	AHA_3536	-	poly(A) polymerase
3425	 62.16	0	3979071..3979580	+	169	117619770	folK-1	AHA_3537	-	2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase
3426	 63.65	0	3979577..3980371	+	264	117619024	panB	AHA_3538	-	3-methyl-2-oxobutanoate hydroxymethyltransferase
3427	 65.62	0	3980559..3981416	+	285	117618576	panC	AHA_3539	-	pantoate--beta-alanine ligase
3428	 63.26	0	3981481..3982008	-	175	117619895	-	AHA_3540	-	hypothetical protein
3429	 63.95	0	3982010..3982450	-	146	117619506	-	AHA_3541	-	methylamine utilization protein-like protein
3430	 67.94	+1	3982752..3983534	-	260	117620844	-	AHA_3542	-	activator of (R)-2-hydroxyglutaryl-CoA dehydratase
3431	 62.95	0	3983544..3984620	-	358	117621255	-	AHA_3543	-	2-hydroxyglutaryl-CoA dehydratase, D-component
3432	 60.85	0	3984930..3985703	-	257	117617932	-	AHA_3544	-	ABC transporter, permease protein
3433	 60.68	0	3985700..3986617	-	305	117618393	-	AHA_3545	-	ABC transporter, ATP-binding protein
3434	 57.82	0	3986729..3987259	-	176	117621142	hpt	AHA_3546	-	hypoxanthine phosphoribosyltransferase
3435	 59.84	0	3987460..3988074	+	204	117617452	-	AHA_3547	-	LitR, transcriptional regulator
3436	 64.87	0	3988149..3988760	-	203	117620222	-	AHA_3548	-	3-octaprenyl-4-hydroxybenzoate decarboxylase UbiX
3437	 63.97	0	3988757..3990127	-	456	117620663	mpl	AHA_3549	-	UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase
3438	 59.13	0	3990306..3990836	+	176	117619370	ppa	AHA_3550	-	inorganic pyrophosphatase
3439	 63.43	0	3990862..3991170	-	102	117620001	-	AHA_3551	-	hypothetical protein
3440	 55.56	-1	3991145..3991243	+	32	117618375	-	AHA_3552	-	hypothetical protein
3441	 60.75	0	3991349..3992227	+	292	117618339	-	AHA_3553	-	hypothetical protein
3442	 57.27	0	3992485..3993027	+	180	117618888	-	AHA_3554	-	hypothetical protein
3443	 61.17	0	3993072..3993362	+	96	117619470	-	AHA_3555	-	hypothetical protein
3444	 63.84	0	3993398..3993964	+	188	117617843	-	AHA_3556	-	hypothetical protein
3445	 65.65	0	3993969..3994658	+	229	117617516	-	AHA_3557	-	ABC transporter, ATP-binding protein
3446	 66.91	0	3994652..3995899	+	415	117620022	-	AHA_3558	-	peptide ABC transporter permease
3447	 63.75	0	3995929..3996408	+	159	117619206	-	AHA_3559	-	hypothetical protein
3448	 68.22	+1	3996641..3997414	+	257	117619833	-	AHA_3560	-	hypothetical protein
3449	 62.92	0	3997678..3999306	+	542	117618231	-	AHA_3561	-	aerotaxis receptor Aer
3450	 47.25	-2	4000360..4001250	+	296	117620636	-	AHA_3562	-	alpha/beta fold family hydrolase
3451	 38.64	-2	4001682..4003133	+	483	117619734	-	AHA_3563	-	hypothetical protein
3452	 61.28	0	4003214..4003807	-	197	117620177	cysC	AHA_3564	-	adenylylsulfate kinase
3453	 64.29	0	4003954..4005678	-	574	117618900	-	AHA_3565	-	divalent anion:sodium symporter family protein
3454	 62.04	0	4005683..4007110	-	475	117619351	-	AHA_3566	-	sulfate adenylyltransferase subunit 1
3455	 60.40	0	4007135..4008043	-	302	117619880	-	AHA_3567	-	sulfate adenylyltransferase subunit 2
3456	 66.31	0	4008152..4009564	-	470	117620289	-	AHA_3568	-	siroheme synthase
3457	 62.87	0	4009762..4010682	+	306	117618677	-	AHA_3569	-	membrane protease subunits
3458	 68.64	+1	4010679..4011134	+	151	117619384	-	AHA_3570	-	nodulation efficiency family protein
3459	 62.53	0	4011217..4011627	-	136	117619018	-	AHA_3571	-	CBS domain-containing protein
3460	 64.00	0	4011781..4013691	+	636	117619670	-	AHA_3572	-	ABC transporter, ATP-binding protein
62.23	MEAN

5.38	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.