IslandPathversion 1.0

IslandPath Analysis: Aeromonas hydrophila subsp. hydrophila ATCC 7966



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 62.23 STD DEV: 5.38
Aeromonas hydrophila subsp. hydrophila ATCC 7966, complete genome - 1..4744448
4122 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
3327	 66.99	0	3847018..3848271	-	417	117620449	proA	AHA_3420	-	gamma-glutamyl phosphate reductase
3328	 64.95	0	3848364..3849467	-	367	117619210	proB	AHA_3421	-	gamma-glutamyl kinase
3329	 59.03	0	3849628..3850020	-	130	117618884	crl	AHA_3422	-	DNA-binding transcriptional regulator Crl
3330	 61.70	0	3850082..3851350	-	422	117618053	frsA	AHA_3423	-	fermentation/respiration switch protein
3331	 60.47	0	3851470..3851937	-	155	117617690	gpt	AHA_3424	-	xanthine-guanine phosphoribosyltransferase
3332	 47.37	-2	3852374..3852487	-	37	117619130	-	AHA_3425	-	hypothetical protein
3333	 64.53	0	3852857..3854308	+	483	117619652	pepD	AHA_3426	-	aminoacyl-histidine dipeptidase
3334	 51.67	-1	3854650..3854769	+	39	117621152	-	AHA_3427	-	hypothetical protein
3335	 65.07	0	3854994..3855995	-	333	117617636	-	AHA_3428	-	oligopeptide transport ATP-binding protein AppF
3336	 65.42	0	3855992..3857035	-	347	117620246	-	AHA_3429	-	oligopeptide transport ATP-binding protein OppD
3337	 60.07	0	3857061..3858878	-	605	117620824	-	AHA_3430	-	oligopeptide-binding protein OppA
3338	 60.40	0	3858961..3859998	-	345	117619387	-	AHA_3431	-	inner membrane ABC transporter permease protein YejE
3339	 60.92	0	3860001..3861026	-	341	117619945	-	AHA_3432	-	oligopeptide transport system permease protein OppB
3340	 61.27	0	3861765..3864320	+	851	117618488	-	AHA_3433	-	outer membrane protein
3341	 62.09	0	3864431..3865195	+	254	117619078	-	AHA_3434	-	TonB system biopolymer transport component
3342	 64.05	0	3865192..3866565	+	457	117617540	-	AHA_3435	-	hypothetical protein
3343	 63.45	0	3866576..3867103	+	175	117617985	-	AHA_3436	-	TonB system transport protein ExbB2
3344	 60.54	0	3867171..3867578	+	135	117618714	-	AHA_3437	-	biopolymer transport exbD2 protein
3345	 65.51	0	3867712..3868230	+	172	117619155	-	AHA_3438	-	periplasmic protein TonB2
3346	 64.24	0	3868242..3869477	+	411	117619852	-	AHA_3439	-	TPR repeat-containing protein
3347	 64.50	0	3869902..3872904	-	1000	117620304	-	AHA_3440	-	chitodextrinase
3348	 64.29	0	3873435..3875579	+	714	117619849	-	AHA_3441	-	nuclease
3349	 62.01	0	3876505..3877920	-	471	117620491	gltX	AHA_3447	-	glutamyl-tRNA synthetase
3350	 64.23	0	3878112..3880283	+	723	117617676	-	AHA_3448	-	methyl-accepting chemotaxis transducer
3351	 66.37	0	3880382..3881050	+	222	117617969	-	AHA_3449	-	opacity-associated protein A
3352	 51.43	-2	3881323..3881532	+	69	117619984	-	AHA_3450	-	hypothetical protein
3353	 59.52	0	3882808..3883353	-	181	117621372	orn	AHA_3459	-	oligoribonuclease
3354	 62.78	0	3883400..3884479	+	359	117620846	rsgA	AHA_3460	-	ribosome-associated GTPase
3355	 61.85	0	3884385..3885380	+	331	117618102	psd	AHA_3461	-	phosphatidylserine decarboxylase
3356	 57.94	0	3885377..3885628	+	83	117617668	-	AHA_3462	-	hypothetical protein
3357	 55.16	-1	3885633..3885884	+	83	117619121	-	AHA_3463	-	hypothetical protein
3358	 65.66	0	3885887..3886285	+	132	117619457	-	AHA_3464	-	hypothetical protein
3359	 59.82	0	3886398..3886967	-	189	117618984	-	AHA_3465	-	hypothetical protein
3360	 60.69	0	3887010..3887444	-	144	117620305	-	AHA_3466	-	carboxymuconolactone decarboxylase family protein
3361	 70.40	+1	3887567..3888370	+	267	117619845	-	AHA_3467	-	AraC family transcriptional regulator
3362	 61.87	0	3888431..3888889	-	152	117620572	-	AHA_3468	-	hypothetical protein
3363	 66.11	0	3889097..3891070	+	657	117620272	-	AHA_3469	-	sensory box protein
3364	 58.78	0	3891139..3891645	-	168	117619831	-	AHA_3470	-	hypothetical protein
3365	 64.21	0	3891909..3894185	+	758	117619616	-	AHA_3471	-	immune inhibitor A
3366	 56.30	-1	3894569..3894703	-	44	117619216	-	AHA_3474	-	hypothetical protein
3367	 66.82	0	3894929..3896206	+	425	117618537	-	AHA_3475	-	proline iminopeptidase
3368	 67.57	0	3896306..3899866	+	1186	117618358	-	AHA_3476	-	ABC transporter, ATP-binding protein
3369	 55.56	-1	3899922..3900164	-	80	117617534	-	AHA_3477	-	hypothetical protein
3370	 68.28	+1	3900246..3901421	-	391	117621064	-	AHA_3478	-	extracellular alkaline serine protease
3371	 65.89	0	3901541..3902833	-	430	117621403	-	AHA_3479	-	putative thiosulfate sulfurtransferase
3372	 64.52	0	3902862..3903794	-	310	117618467	-	AHA_3480	-	thermolabile glutaminase
3373	 61.26	0	3903907..3904239	-	110	117618679	-	AHA_3481	-	hypothetical protein
3374	 62.50	0	3904254..3904949	-	231	117619178	trmB	AHA_3482	-	tRNA (guanine-N(7)-)-methyltransferase
3375	 65.45	0	3905316..3906383	+	355	117619828	-	AHA_3483	-	aminopeptidase Y
3376	 64.97	0	3906566..3907747	+	393	117620769	-	AHA_3484	-	aminotransferase, classes I and II
3377	 64.12	0	3907812..3909344	-	510	117620916	-	AHA_3485	-	EAL domain-containing protein
3378	 65.56	0	3909647..3910552	+	301	117621434	-	AHA_3486	-	hypothetical protein
3379	 68.38	+1	3910646..3913093	-	815	117618473	-	AHA_3487	-	ABC-type transport system, permease component
3380	 66.80	0	3913090..3913815	-	241	117618524	-	AHA_3488	-	ABC transporter, ATP-binding protein
3381	 62.17	0	3913814..3914413	+	199	117619110	-	AHA_3489	-	acyl-CoA thioesterase I
3382	 59.79	0	3914497..3915441	-	314	117617728	-	AHA_3490	-	chemotaxis protein CheV
3383	 62.61	0	3915737..3930880	-	5047	117618784	-	AHA_3491	-	hypothetical protein
3384	 63.48	0	3931109..3932770	-	553	117620516	-	AHA_3492	-	hypothetical protein
3385	 58.81	0	3932889..3933524	-	211	117619951	-	AHA_3493	-	hemolysin III
3386	 65.01	0	3933748..3935253	+	501	117619706	-	AHA_3494	-	group II decarboxylase
3387	 53.80	-1	3935358..3935909	+	183	117620603	ispZ	AHA_3495	-	intracellular septation protein A
3388	 64.65	0	3935935..3936231	+	98	117617855	-	AHA_3496	-	YciI-like protein
3389	 63.89	0	3936313..3937104	-	263	117619469	cysQ-2	AHA_3497	-	3'(2'),5'-bisphosphate nucleotidase
3390	 60.44	0	3937251..3937571	+	106	117618885	-	AHA_3498	-	ComEA protein
3391	 59.51	0	3937685..3938578	+	297	117618873	galU	AHA_3499	-	UTP-glucose-1-phosphate uridylyltransferase
3392	 60.87	0	3938792..3940189	+	465	117618661	-	AHA_3500	-	dipeptide/tripeptide permease
3393	 60.19	0	3940263..3941234	-	323	117619260	-	AHA_3501	-	response regulator receiver domain-containing protein
3394	 63.16	0	3941560..3943155	-	531	117617501	-	AHA_3502	-	hypothetical protein
3395	 65.49	0	3941575..3942252	+	225	117618099	-	AHA_3503	-	hypothetical protein
3396	 61.64	0	3942322..3943176	+	284	117620088	-	AHA_3504	-	DNA replication protein, putative
3397	 67.14	0	3943305..3943940	+	211	117621456	-	AHA_3505	-	NAD-dependent epimerase/dehydratase family protein
3398	 65.58	0	3944051..3945247	-	398	117619862	-	AHA_3506	-	ABC-type multidrug transport system, permease component
3399	 65.17	0	3945351..3946487	-	378	117620273	-	AHA_3507	-	ABC-type multidrug transport system, permease component
3400	 65.77	0	3946487..3947491	-	334	117618109	-	AHA_3508	-	membrane-fusion protein
3401	 63.58	0	3947565..3948923	-	452	117618828	-	AHA_3509	-	outer membrane efflux protein
3402	 57.04	0	3949262..3950227	+	321	117619221	-	AHA_3510	-	tRNA-dihydrouridine synthase B
3403	 55.22	-1	3950253..3950549	+	98	117617872	fis	AHA_3511	-	DNA-binding protein Fis
3404	 61.45	0	3950619..3951251	-	210	117618459	-	AHA_3512	-	amino acid transporter LysE
3405	 54.07	-1	3957236..3957640	-	134	117620034	-	AHA_3517	-	iron-sulfur cluster insertion protein ErpA
3406	 62.21	0	3957677..3958372	-	231	117620607	-	AHA_3518	-	hypothetical protein
3407	 64.87	0	3958459..3959853	-	464	117619175	-	AHA_3519	-	chloride channel protein
3408	 64.80	0	3960076..3961362	+	428	117619735	hemL	AHA_3520	-	glutamate-1-semialdehyde-2,1-aminomutase
3409	 62.75	0	3961572..3962387	+	271	117618477	-	AHA_3521	-	hypothetical protein
3410	 63.46	0	3962448..3963350	-	300	117618811	-	AHA_3522	-	hypothetical protein
3411	 65.70	0	3963607..3964329	-	240	117621040	-	AHA_3523	-	PAP2 family protein
3412	 64.73	0	3964517..3965032	+	171	117618120	-	AHA_3524	-	hypothetical protein
3413	 63.63	0	3965108..3966688	-	526	117617783	-	AHA_3525	-	response regulator
3414	 63.72	0	3966803..3967684	-	293	117619015	-	AHA_3526	-	LysR family transcriptional regulator
3415	 59.35	0	3967841..3968305	+	154	117618589	-	AHA_3527	-	SMR family multidrug efflux pump
3416	 63.55	0	3968293..3968613	+	106	117618209	-	AHA_3528	-	SMR family multidrug efflux pump
3417	 67.41	0	3968713..3969114	-	133	117617482	-	AHA_3529	-	glyoxylase I family protein
3418	 65.76	0	3969157..3971478	-	773	117619028	mrcB	AHA_3530	-	penicillin-binding protein 1B
3419	 69.00	+1	3971730..3974900	-	1056	117619450	hrpB	AHA_3531	-	ATP-dependent helicase HrpB
3420	 70.37	+1	3974322..3974861	+	179	117621020	-	AHA_3532	-	2'-5' RNA ligase
3421	 59.68	0	3974904..3975647	+	247	117617592	sfsA	AHA_3533	-	sugar fermentation stimulation protein
3422	 55.56	-1	3975767..3976216	+	149	117619241	dksA	AHA_3534	-	RNA polymerase-binding protein DksA
3423	 67.44	0	3976336..3977238	+	300	117619247	-	AHA_3535	-	glutamyl-Q tRNA(Asp) synthetase
3424	 64.20	0	3977560..3979059	+	499	117620345	-	AHA_3536	-	poly(A) polymerase
3425	 62.16	0	3979071..3979580	+	169	117619770	folK-1	AHA_3537	-	2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase
3426	 63.65	0	3979577..3980371	+	264	117619024	panB	AHA_3538	-	3-methyl-2-oxobutanoate hydroxymethyltransferase
62.23	MEAN

5.38	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.