IslandPathversion 1.0

IslandPath Analysis: Aeromonas hydrophila subsp. hydrophila ATCC 7966



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 62.23 STD DEV: 5.38
Aeromonas hydrophila subsp. hydrophila ATCC 7966, complete genome - 1..4744448
4122 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
3299	 66.67	0	3820927..3821298	-	123	117619414	-	AHA_3392	-	3-hydroxymyristoyl/3-hydroxydecanoyl-(acyl carrier protein) dehydratase
3300	 70.75	+1	3821282..3822652	-	456	117619002	-	AHA_3393	-	acyl-coenzyme A synthetase
3301	 68.54	+1	3822649..3823287	-	212	117618224	-	AHA_3394	-	DNA gyrase subunit B
3302	 61.45	0	3823256..3823504	-	82	117618249	-	AHA_3395	-	acyl carrier protein
3303	 60.76	0	3823508..3823795	-	95	117620777	-	AHA_3396	-	putative acyl carrier protein
3304	 67.19	0	3823792..3824550	-	252	117621203	-	AHA_3397	-	1-acyl-sn-glycerol-3-phosphate acyltransferase
3305	 71.99	+1	3824535..3825248	-	237	117618431	-	AHA_3398	-	beta-ketoacyl synthase domain-containing protein
3306	 50.54	-2	3825425..3825889	+	154	117617876	-	AHA_3399	-	hypothetical protein
3307	 66.02	0	3825908..3826984	+	358	117621133	-	AHA_3400	-	SAM-dependent methyltransferase
3308	 64.81	0	3827032..3827247	+	71	117620530	-	AHA_3401	-	hypothetical protein
3309	 61.51	0	3827293..3828048	-	251	117619519	-	AHA_3402	-	DNA/RNA non-specific endonuclease
3310	 63.50	0	3828292..3829269	-	325	117619190	-	AHA_3403	-	cytochrome c551 peroxidase
3311	 65.56	0	3829719..3830444	+	241	117619390	-	AHA_3404	-	carbonic anhydrase
3312	 68.43	+1	3830519..3831427	-	302	117620416	-	AHA_3405	-	indigoidine synthase A like protein
3313	 66.77	0	3831421..3832356	-	311	117619101	-	AHA_3406	-	PfkB family kinase
3314	 66.08	0	3832658..3833170	-	170	117618155	-	AHA_3407	-	nitrite reductase [NAD(P)H] large subunit
3315	 68.25	+1	3833218..3835803	-	861	117620856	nirB-1	AHA_3408	-	nitrite reductase [NAD(P)H], large subunit
3316	 65.57	0	3835829..3836650	-	273	117619035	-	AHA_3409	-	nitrate transport ATP-binding protein NrtC
3317	 67.41	0	3836682..3837626	-	314	117617477	-	AHA_3410	-	nitrate transporter component
3318	 66.33	0	3837641..3839140	-	499	117620008	-	AHA_3411	-	ABC-type nitrate/sulfonate/bicarbonate transport system, periplasmic component
3319	 70.09	+1	3839437..3840021	-	194	117620442	-	AHA_3412	-	response regulator NasT, putative
3320	 72.20	+1	3840161..3840919	-	252	117620855	cobA	AHA_3413	-	uroporphyrin-III C-methyltransferase
3321	 69.66	+1	3841089..3843725	-	878	117621327	-	AHA_3414	-	nitrate reductase
3322	 65.68	0	3844029..3844535	+	168	117620534	-	AHA_3415	-	23S rRNA methyltransferase
3323	 58.12	0	3844525..3844641	+	38	117618218	-	AHA_3416	-	RNA methyltransferase
3324	 60.73	0	3844801..3845541	-	246	117620129	-	AHA_3417	-	hypothetical protein
3325	 61.34	0	3845728..3846159	+	143	117619559	-	AHA_3418	-	universal stress protein
3326	 61.79	0	3846229..3846864	-	211	117618990	-	AHA_3419	-	hypothetical protein
3327	 66.99	0	3847018..3848271	-	417	117620449	proA	AHA_3420	-	gamma-glutamyl phosphate reductase
3328	 64.95	0	3848364..3849467	-	367	117619210	proB	AHA_3421	-	gamma-glutamyl kinase
3329	 59.03	0	3849628..3850020	-	130	117618884	crl	AHA_3422	-	DNA-binding transcriptional regulator Crl
3330	 61.70	0	3850082..3851350	-	422	117618053	frsA	AHA_3423	-	fermentation/respiration switch protein
3331	 60.47	0	3851470..3851937	-	155	117617690	gpt	AHA_3424	-	xanthine-guanine phosphoribosyltransferase
3332	 47.37	-2	3852374..3852487	-	37	117619130	-	AHA_3425	-	hypothetical protein
3333	 64.53	0	3852857..3854308	+	483	117619652	pepD	AHA_3426	-	aminoacyl-histidine dipeptidase
3334	 51.67	-1	3854650..3854769	+	39	117621152	-	AHA_3427	-	hypothetical protein
3335	 65.07	0	3854994..3855995	-	333	117617636	-	AHA_3428	-	oligopeptide transport ATP-binding protein AppF
3336	 65.42	0	3855992..3857035	-	347	117620246	-	AHA_3429	-	oligopeptide transport ATP-binding protein OppD
3337	 60.07	0	3857061..3858878	-	605	117620824	-	AHA_3430	-	oligopeptide-binding protein OppA
3338	 60.40	0	3858961..3859998	-	345	117619387	-	AHA_3431	-	inner membrane ABC transporter permease protein YejE
3339	 60.92	0	3860001..3861026	-	341	117619945	-	AHA_3432	-	oligopeptide transport system permease protein OppB
3340	 61.27	0	3861765..3864320	+	851	117618488	-	AHA_3433	-	outer membrane protein
3341	 62.09	0	3864431..3865195	+	254	117619078	-	AHA_3434	-	TonB system biopolymer transport component
3342	 64.05	0	3865192..3866565	+	457	117617540	-	AHA_3435	-	hypothetical protein
3343	 63.45	0	3866576..3867103	+	175	117617985	-	AHA_3436	-	TonB system transport protein ExbB2
3344	 60.54	0	3867171..3867578	+	135	117618714	-	AHA_3437	-	biopolymer transport exbD2 protein
3345	 65.51	0	3867712..3868230	+	172	117619155	-	AHA_3438	-	periplasmic protein TonB2
3346	 64.24	0	3868242..3869477	+	411	117619852	-	AHA_3439	-	TPR repeat-containing protein
3347	 64.50	0	3869902..3872904	-	1000	117620304	-	AHA_3440	-	chitodextrinase
3348	 64.29	0	3873435..3875579	+	714	117619849	-	AHA_3441	-	nuclease
3349	 62.01	0	3876505..3877920	-	471	117620491	gltX	AHA_3447	-	glutamyl-tRNA synthetase
3350	 64.23	0	3878112..3880283	+	723	117617676	-	AHA_3448	-	methyl-accepting chemotaxis transducer
3351	 66.37	0	3880382..3881050	+	222	117617969	-	AHA_3449	-	opacity-associated protein A
3352	 51.43	-2	3881323..3881532	+	69	117619984	-	AHA_3450	-	hypothetical protein
3353	 59.52	0	3882808..3883353	-	181	117621372	orn	AHA_3459	-	oligoribonuclease
3354	 62.78	0	3883400..3884479	+	359	117620846	rsgA	AHA_3460	-	ribosome-associated GTPase
3355	 61.85	0	3884385..3885380	+	331	117618102	psd	AHA_3461	-	phosphatidylserine decarboxylase
3356	 57.94	0	3885377..3885628	+	83	117617668	-	AHA_3462	-	hypothetical protein
3357	 55.16	-1	3885633..3885884	+	83	117619121	-	AHA_3463	-	hypothetical protein
3358	 65.66	0	3885887..3886285	+	132	117619457	-	AHA_3464	-	hypothetical protein
3359	 59.82	0	3886398..3886967	-	189	117618984	-	AHA_3465	-	hypothetical protein
3360	 60.69	0	3887010..3887444	-	144	117620305	-	AHA_3466	-	carboxymuconolactone decarboxylase family protein
3361	 70.40	+1	3887567..3888370	+	267	117619845	-	AHA_3467	-	AraC family transcriptional regulator
3362	 61.87	0	3888431..3888889	-	152	117620572	-	AHA_3468	-	hypothetical protein
3363	 66.11	0	3889097..3891070	+	657	117620272	-	AHA_3469	-	sensory box protein
3364	 58.78	0	3891139..3891645	-	168	117619831	-	AHA_3470	-	hypothetical protein
3365	 64.21	0	3891909..3894185	+	758	117619616	-	AHA_3471	-	immune inhibitor A
3366	 56.30	-1	3894569..3894703	-	44	117619216	-	AHA_3474	-	hypothetical protein
3367	 66.82	0	3894929..3896206	+	425	117618537	-	AHA_3475	-	proline iminopeptidase
3368	 67.57	0	3896306..3899866	+	1186	117618358	-	AHA_3476	-	ABC transporter, ATP-binding protein
3369	 55.56	-1	3899922..3900164	-	80	117617534	-	AHA_3477	-	hypothetical protein
3370	 68.28	+1	3900246..3901421	-	391	117621064	-	AHA_3478	-	extracellular alkaline serine protease
3371	 65.89	0	3901541..3902833	-	430	117621403	-	AHA_3479	-	putative thiosulfate sulfurtransferase
3372	 64.52	0	3902862..3903794	-	310	117618467	-	AHA_3480	-	thermolabile glutaminase
3373	 61.26	0	3903907..3904239	-	110	117618679	-	AHA_3481	-	hypothetical protein
3374	 62.50	0	3904254..3904949	-	231	117619178	trmB	AHA_3482	-	tRNA (guanine-N(7)-)-methyltransferase
3375	 65.45	0	3905316..3906383	+	355	117619828	-	AHA_3483	-	aminopeptidase Y
3376	 64.97	0	3906566..3907747	+	393	117620769	-	AHA_3484	-	aminotransferase, classes I and II
3377	 64.12	0	3907812..3909344	-	510	117620916	-	AHA_3485	-	EAL domain-containing protein
3378	 65.56	0	3909647..3910552	+	301	117621434	-	AHA_3486	-	hypothetical protein
3379	 68.38	+1	3910646..3913093	-	815	117618473	-	AHA_3487	-	ABC-type transport system, permease component
3380	 66.80	0	3913090..3913815	-	241	117618524	-	AHA_3488	-	ABC transporter, ATP-binding protein
3381	 62.17	0	3913814..3914413	+	199	117619110	-	AHA_3489	-	acyl-CoA thioesterase I
3382	 59.79	0	3914497..3915441	-	314	117617728	-	AHA_3490	-	chemotaxis protein CheV
3383	 62.61	0	3915737..3930880	-	5047	117618784	-	AHA_3491	-	hypothetical protein
3384	 63.48	0	3931109..3932770	-	553	117620516	-	AHA_3492	-	hypothetical protein
3385	 58.81	0	3932889..3933524	-	211	117619951	-	AHA_3493	-	hemolysin III
3386	 65.01	0	3933748..3935253	+	501	117619706	-	AHA_3494	-	group II decarboxylase
3387	 53.80	-1	3935358..3935909	+	183	117620603	ispZ	AHA_3495	-	intracellular septation protein A
3388	 64.65	0	3935935..3936231	+	98	117617855	-	AHA_3496	-	YciI-like protein
3389	 63.89	0	3936313..3937104	-	263	117619469	cysQ-2	AHA_3497	-	3'(2'),5'-bisphosphate nucleotidase
3390	 60.44	0	3937251..3937571	+	106	117618885	-	AHA_3498	-	ComEA protein
3391	 59.51	0	3937685..3938578	+	297	117618873	galU	AHA_3499	-	UTP-glucose-1-phosphate uridylyltransferase
3392	 60.87	0	3938792..3940189	+	465	117618661	-	AHA_3500	-	dipeptide/tripeptide permease
3393	 60.19	0	3940263..3941234	-	323	117619260	-	AHA_3501	-	response regulator receiver domain-containing protein
3394	 63.16	0	3941560..3943155	-	531	117617501	-	AHA_3502	-	hypothetical protein
3395	 65.49	0	3941575..3942252	+	225	117618099	-	AHA_3503	-	hypothetical protein
3396	 61.64	0	3942322..3943176	+	284	117620088	-	AHA_3504	-	DNA replication protein, putative
3397	 67.14	0	3943305..3943940	+	211	117621456	-	AHA_3505	-	NAD-dependent epimerase/dehydratase family protein
3398	 65.58	0	3944051..3945247	-	398	117619862	-	AHA_3506	-	ABC-type multidrug transport system, permease component
62.23	MEAN

5.38	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.