IslandPathversion 1.0

IslandPath Analysis: Aeromonas hydrophila subsp. hydrophila ATCC 7966



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 62.23 STD DEV: 5.38
Aeromonas hydrophila subsp. hydrophila ATCC 7966, complete genome - 1..4744448
4122 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
3274	 64.32	0	3792087..3793958	-	623	117621191	-	AHA_3367	-	methyl-accepting chemotaxis protein
3275	 59.05	0	3794212..3795310	+	365	117617639	prfB	AHA_3368	-	peptide chain release factor 2 (programmed frameshift)
3276	 59.44	0	3795335..3796870	+	511	117617708	lysS	AHA_3369	-	lysyl-tRNA synthetase
3277	 67.04	0	3797000..3797803	-	267	117618534	-	AHA_3370	-	PhzF family phenazine biosynthesis protein
3278	 63.55	0	3797999..3799792	+	597	117619136	-	AHA_3371	-	sulfite reductase [NADPH] flavoprotein, alpha-component
3279	 65.15	0	3799792..3801504	+	570	117621087	cysI	AHA_3372	-	sulfite reductase subunit beta
3280	 67.04	0	3801494..3802300	+	268	117619665	cysH	AHA_3373	-	phosphoadenosine phosphosulfate reductase
3281	 65.67	0	3802393..3803394	-	333	117618403	proX	AHA_3374	-	glycine betaine transporter periplasmic subunit
3282	 66.06	0	3803391..3804542	-	383	117619242	-	AHA_3375	-	glycine betaine/L-proline ABC transporter, permease protein
3283	 63.66	0	3804539..3805735	-	398	117619789	-	AHA_3376	-	glycine betaine/L-proline ABC transporter, ATP binding protein
3284	 65.04	0	3806237..3806728	-	163	117620394	folA	AHA_3377	-	dihydrofolate reductase
3285	 62.18	0	3806753..3807220	-	155	117618621	-	AHA_3378	-	hypothetical protein
3286	 63.66	0	3807217..3808014	-	265	117620981	-	AHA_3379	-	hypothetical protein
3287	 51.17	-2	3808250..3808591	-	113	117619515	-	AHA_3380	-	hypothetical protein
3288	 62.90	0	3808990..3809520	+	176	117619057	mogA	AHA_3381	-	molybdenum cofactor biosynthesis protein
3289	 68.79	+1	3810055..3811281	-	408	117620112	-	AHA_3382	-	3-oxoacyl-(acyl carrier protein) synthase II
3290	 65.84	0	3811278..3812003	-	241	117618557	fabG	AHA_3383	-	3-ketoacyl-(acyl-carrier-protein) reductase
3291	 68.83	+1	3812013..3812474	-	153	117621289	-	AHA_3384	-	thioester dehydrase family protein
3292	 71.90	+1	3812467..3813651	-	394	117620815	-	AHA_3385	-	3-oxoacyl-(acyl-carrier-protein) synthase II
3293	 67.92	+1	3813648..3814205	-	185	117620498	-	AHA_3386	-	hypothetical protein
3294	 68.78	+1	3814202..3816562	-	786	117619925	-	AHA_3387	-	hypothetical protein
3295	 66.67	0	3816613..3817227	-	204	117621189	-	AHA_3388	-	hypothetical protein
3296	 62.91	0	3817224..3817649	-	141	117620858	-	AHA_3389	-	4-hydroxybenzoyl-CoA thioesterase domain-containing protein
3297	 69.10	+1	3817678..3819240	-	520	117620080	-	AHA_3390	-	phenylalanine and histidine ammonia-lyase
3298	 67.25	0	3819227..3820930	-	567	117619426	-	AHA_3391	-	glycosyl transferase, group 2 family protein
3299	 66.67	0	3820927..3821298	-	123	117619414	-	AHA_3392	-	3-hydroxymyristoyl/3-hydroxydecanoyl-(acyl carrier protein) dehydratase
3300	 70.75	+1	3821282..3822652	-	456	117619002	-	AHA_3393	-	acyl-coenzyme A synthetase
3301	 68.54	+1	3822649..3823287	-	212	117618224	-	AHA_3394	-	DNA gyrase subunit B
3302	 61.45	0	3823256..3823504	-	82	117618249	-	AHA_3395	-	acyl carrier protein
3303	 60.76	0	3823508..3823795	-	95	117620777	-	AHA_3396	-	putative acyl carrier protein
3304	 67.19	0	3823792..3824550	-	252	117621203	-	AHA_3397	-	1-acyl-sn-glycerol-3-phosphate acyltransferase
3305	 71.99	+1	3824535..3825248	-	237	117618431	-	AHA_3398	-	beta-ketoacyl synthase domain-containing protein
3306	 50.54	-2	3825425..3825889	+	154	117617876	-	AHA_3399	-	hypothetical protein
3307	 66.02	0	3825908..3826984	+	358	117621133	-	AHA_3400	-	SAM-dependent methyltransferase
3308	 64.81	0	3827032..3827247	+	71	117620530	-	AHA_3401	-	hypothetical protein
3309	 61.51	0	3827293..3828048	-	251	117619519	-	AHA_3402	-	DNA/RNA non-specific endonuclease
3310	 63.50	0	3828292..3829269	-	325	117619190	-	AHA_3403	-	cytochrome c551 peroxidase
3311	 65.56	0	3829719..3830444	+	241	117619390	-	AHA_3404	-	carbonic anhydrase
3312	 68.43	+1	3830519..3831427	-	302	117620416	-	AHA_3405	-	indigoidine synthase A like protein
3313	 66.77	0	3831421..3832356	-	311	117619101	-	AHA_3406	-	PfkB family kinase
3314	 66.08	0	3832658..3833170	-	170	117618155	-	AHA_3407	-	nitrite reductase [NAD(P)H] large subunit
3315	 68.25	+1	3833218..3835803	-	861	117620856	nirB-1	AHA_3408	-	nitrite reductase [NAD(P)H], large subunit
3316	 65.57	0	3835829..3836650	-	273	117619035	-	AHA_3409	-	nitrate transport ATP-binding protein NrtC
3317	 67.41	0	3836682..3837626	-	314	117617477	-	AHA_3410	-	nitrate transporter component
3318	 66.33	0	3837641..3839140	-	499	117620008	-	AHA_3411	-	ABC-type nitrate/sulfonate/bicarbonate transport system, periplasmic component
3319	 70.09	+1	3839437..3840021	-	194	117620442	-	AHA_3412	-	response regulator NasT, putative
3320	 72.20	+1	3840161..3840919	-	252	117620855	cobA	AHA_3413	-	uroporphyrin-III C-methyltransferase
3321	 69.66	+1	3841089..3843725	-	878	117621327	-	AHA_3414	-	nitrate reductase
3322	 65.68	0	3844029..3844535	+	168	117620534	-	AHA_3415	-	23S rRNA methyltransferase
3323	 58.12	0	3844525..3844641	+	38	117618218	-	AHA_3416	-	RNA methyltransferase
3324	 60.73	0	3844801..3845541	-	246	117620129	-	AHA_3417	-	hypothetical protein
3325	 61.34	0	3845728..3846159	+	143	117619559	-	AHA_3418	-	universal stress protein
3326	 61.79	0	3846229..3846864	-	211	117618990	-	AHA_3419	-	hypothetical protein
3327	 66.99	0	3847018..3848271	-	417	117620449	proA	AHA_3420	-	gamma-glutamyl phosphate reductase
3328	 64.95	0	3848364..3849467	-	367	117619210	proB	AHA_3421	-	gamma-glutamyl kinase
3329	 59.03	0	3849628..3850020	-	130	117618884	crl	AHA_3422	-	DNA-binding transcriptional regulator Crl
3330	 61.70	0	3850082..3851350	-	422	117618053	frsA	AHA_3423	-	fermentation/respiration switch protein
3331	 60.47	0	3851470..3851937	-	155	117617690	gpt	AHA_3424	-	xanthine-guanine phosphoribosyltransferase
3332	 47.37	-2	3852374..3852487	-	37	117619130	-	AHA_3425	-	hypothetical protein
3333	 64.53	0	3852857..3854308	+	483	117619652	pepD	AHA_3426	-	aminoacyl-histidine dipeptidase
3334	 51.67	-1	3854650..3854769	+	39	117621152	-	AHA_3427	-	hypothetical protein
3335	 65.07	0	3854994..3855995	-	333	117617636	-	AHA_3428	-	oligopeptide transport ATP-binding protein AppF
3336	 65.42	0	3855992..3857035	-	347	117620246	-	AHA_3429	-	oligopeptide transport ATP-binding protein OppD
3337	 60.07	0	3857061..3858878	-	605	117620824	-	AHA_3430	-	oligopeptide-binding protein OppA
3338	 60.40	0	3858961..3859998	-	345	117619387	-	AHA_3431	-	inner membrane ABC transporter permease protein YejE
3339	 60.92	0	3860001..3861026	-	341	117619945	-	AHA_3432	-	oligopeptide transport system permease protein OppB
3340	 61.27	0	3861765..3864320	+	851	117618488	-	AHA_3433	-	outer membrane protein
3341	 62.09	0	3864431..3865195	+	254	117619078	-	AHA_3434	-	TonB system biopolymer transport component
3342	 64.05	0	3865192..3866565	+	457	117617540	-	AHA_3435	-	hypothetical protein
3343	 63.45	0	3866576..3867103	+	175	117617985	-	AHA_3436	-	TonB system transport protein ExbB2
3344	 60.54	0	3867171..3867578	+	135	117618714	-	AHA_3437	-	biopolymer transport exbD2 protein
3345	 65.51	0	3867712..3868230	+	172	117619155	-	AHA_3438	-	periplasmic protein TonB2
3346	 64.24	0	3868242..3869477	+	411	117619852	-	AHA_3439	-	TPR repeat-containing protein
3347	 64.50	0	3869902..3872904	-	1000	117620304	-	AHA_3440	-	chitodextrinase
3348	 64.29	0	3873435..3875579	+	714	117619849	-	AHA_3441	-	nuclease
3349	 62.01	0	3876505..3877920	-	471	117620491	gltX	AHA_3447	-	glutamyl-tRNA synthetase
3350	 64.23	0	3878112..3880283	+	723	117617676	-	AHA_3448	-	methyl-accepting chemotaxis transducer
3351	 66.37	0	3880382..3881050	+	222	117617969	-	AHA_3449	-	opacity-associated protein A
3352	 51.43	-2	3881323..3881532	+	69	117619984	-	AHA_3450	-	hypothetical protein
3353	 59.52	0	3882808..3883353	-	181	117621372	orn	AHA_3459	-	oligoribonuclease
3354	 62.78	0	3883400..3884479	+	359	117620846	rsgA	AHA_3460	-	ribosome-associated GTPase
3355	 61.85	0	3884385..3885380	+	331	117618102	psd	AHA_3461	-	phosphatidylserine decarboxylase
3356	 57.94	0	3885377..3885628	+	83	117617668	-	AHA_3462	-	hypothetical protein
3357	 55.16	-1	3885633..3885884	+	83	117619121	-	AHA_3463	-	hypothetical protein
3358	 65.66	0	3885887..3886285	+	132	117619457	-	AHA_3464	-	hypothetical protein
3359	 59.82	0	3886398..3886967	-	189	117618984	-	AHA_3465	-	hypothetical protein
3360	 60.69	0	3887010..3887444	-	144	117620305	-	AHA_3466	-	carboxymuconolactone decarboxylase family protein
3361	 70.40	+1	3887567..3888370	+	267	117619845	-	AHA_3467	-	AraC family transcriptional regulator
3362	 61.87	0	3888431..3888889	-	152	117620572	-	AHA_3468	-	hypothetical protein
3363	 66.11	0	3889097..3891070	+	657	117620272	-	AHA_3469	-	sensory box protein
3364	 58.78	0	3891139..3891645	-	168	117619831	-	AHA_3470	-	hypothetical protein
3365	 64.21	0	3891909..3894185	+	758	117619616	-	AHA_3471	-	immune inhibitor A
3366	 56.30	-1	3894569..3894703	-	44	117619216	-	AHA_3474	-	hypothetical protein
3367	 66.82	0	3894929..3896206	+	425	117618537	-	AHA_3475	-	proline iminopeptidase
3368	 67.57	0	3896306..3899866	+	1186	117618358	-	AHA_3476	-	ABC transporter, ATP-binding protein
3369	 55.56	-1	3899922..3900164	-	80	117617534	-	AHA_3477	-	hypothetical protein
3370	 68.28	+1	3900246..3901421	-	391	117621064	-	AHA_3478	-	extracellular alkaline serine protease
3371	 65.89	0	3901541..3902833	-	430	117621403	-	AHA_3479	-	putative thiosulfate sulfurtransferase
3372	 64.52	0	3902862..3903794	-	310	117618467	-	AHA_3480	-	thermolabile glutaminase
3373	 61.26	0	3903907..3904239	-	110	117618679	-	AHA_3481	-	hypothetical protein
62.23	MEAN

5.38	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.