IslandPathversion 1.0

IslandPath Analysis: Aeromonas hydrophila subsp. hydrophila ATCC 7966



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 62.23 STD DEV: 5.38
Aeromonas hydrophila subsp. hydrophila ATCC 7966, complete genome - 1..4744448
4122 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2596	 65.22	0	2976517..2979066	-	849	117620882	-	AHA_2669	-	hypothetical protein
2597	 54.24	-1	2979544..2981169	-	541	117618156	-	AHA_2670	-	putative sulfatase
2598	 62.44	0	2981550..2982329	+	259	117617704	-	AHA_2671	-	hypothetical protein
2599	 66.01	0	2982415..2983629	+	404	117619020	-	AHA_2672	-	major facilitator transporter
2600	 59.82	0	2983971..2984627	+	218	117618579	-	AHA_2674	-	hypothetical protein
2601	 65.00	0	2984791..2986944	+	717	117618991	-	AHA_2675	-	hypothetical protein
2602	 59.42	0	2986965..2987309	+	114	117620322	-	AHA_2676	-	dissimilatory sulfite reductase, gamma subunit
2603	 65.17	0	2987367..2988167	-	266	117619842	-	AHA_2677	-	protein DedD
2604	 66.19	0	2988242..2989489	-	415	117621230	folC	AHA_2678	-	FolC bifunctional protein
2605	 60.65	0	2989504..2990367	-	287	117620783	accD	AHA_2679	-	acetyl-CoA carboxylase, carboxyl transferase, beta subunit
2606	 63.95	0	2990487..2991296	-	269	117619854	truA	AHA_2680	-	tRNA pseudouridine synthase A
2607	 66.17	0	2991476..2993674	-	732	117620298	-	AHA_2681	-	motility protein FimV
2608	 62.64	0	2993950..2994966	-	338	117618052	asd-2	AHA_2682	-	aspartate-semialdehyde dehydrogenase
2609	 66.93	0	2995109..2996239	-	376	117618934	-	AHA_2683	-	erythronate-4-phosphate dehydrogenase
2610	 68.81	+1	2996562..2997308	+	248	117621237	-	AHA_2684	-	phosphatidylglycerophosphatase B
2611	 61.49	0	2997380..2998210	-	276	117617464	-	AHA_2685	-	outer membrane lipoprotein
2612	 66.11	0	2998447..2998986	+	179	117619654	-	AHA_2686	-	isochorismatase family protein
2613	 66.08	0	2999464..3001338	+	624	117620234	-	AHA_2687	-	serine proteinase
2614	 67.97	+1	3001356..3001814	+	152	117619851	-	AHA_2688	-	hypothetical protein
2615	 64.00	0	3001952..3004618	+	888	117620313	-	AHA_2689	-	beta-glucosidase
2616	 63.28	0	3004713..3006098	-	461	117620878	-	AHA_2690	-	transcriptional regulator, AraC family protein
2617	 63.63	0	3005995..3008367	-	790	117617578	ppsA	AHA_2691	-	phosphoenolpyruvate synthase
2618	 62.73	0	3008682..3009494	+	270	117617893	-	AHA_2692	-	hypothetical protein
2619	 63.89	0	3009584..3009871	-	95	117618706	-	AHA_2693	-	hypothetical protein
2620	 60.28	0	3010234..3011610	+	458	117619044	-	AHA_2694	-	aromatic amino acid transport protein AroP
2621	 57.78	0	3011858..3012577	-	239	117619801	-	AHA_2695	-	hypothetical protein
2622	 56.63	-1	3012619..3013176	-	185	117620362	-	AHA_2696	-	hypothetical protein
2623	 62.92	0	3013263..3026045	-	4260	117620923	-	AHA_2697	-	structural toxin protein RtxA
2624	 53.48	-1	3026202..3028127	-	641	117617767	-	AHA_2698	-	diguanylate cyclase/phosphodiesterase
2625	 54.33	-1	3029012..3030340	-	442	117618430	-	AHA_2699	-	agglutination protein
2626	 53.77	-1	3030376..3031794	-	472	117618439	-	AHA_2700	-	HlyD family secretion protein
2627	 57.67	0	3031787..3033931	-	714	117620529	-	AHA_2701	-	toxin secretion ATP-binding protein
2628	 62.61	0	3034335..3035270	-	311	117621140	-	AHA_2702	-	radical SAM protein
2629	 63.39	0	3035884..3040341	+	1485	117619669	gltB	AHA_2703	-	glutamate synthase subunit alpha
2630	 63.56	0	3040354..3041769	+	471	117619509	gltD	AHA_2704	-	glutamate synthase subunit beta
2631	 66.14	0	3041856..3042617	-	253	117619819	-	AHA_2705	-	amino acid ABC transporter, ATP-binding protein
2632	 61.21	0	3042614..3043291	-	225	117620816	-	AHA_2706	-	L-cystine ABC transporter, permease protein
2633	 59.04	0	3043328..3044101	-	257	117621407	-	AHA_2707	-	amino acid ABC transporter, periplasmic amino acid-binding protein
2634	 62.77	0	3044369..3044779	-	136	117617694	-	AHA_2708	-	hypothetical protein
2635	 65.28	0	3044789..3045367	-	192	117617970	-	AHA_2709	-	O-methyltransferase
2636	 66.45	0	3045436..3045903	-	155	117618083	soxR	AHA_2710	-	redox-sensitive transcriptional activator SoxR
2637	 67.67	+1	3045976..3046968	+	330	117618386	-	AHA_2711	-	hypothetical protein
2638	 66.44	0	3046988..3047419	-	143	117619005	-	AHA_2712	-	extracellular protease
2639	 64.27	0	3047487..3048527	-	346	117619342	-	AHA_2713	-	extracellular protease
2640	 66.20	0	3048800..3049438	-	212	117619257	-	AHA_2714	-	hypothetical protein
2641	 65.61	0	3049538..3050764	-	408	117620037	-	AHA_2715	-	putative ATP-dependent RNA helicase RhlE
2642	 58.99	0	3051085..3051618	-	177	117619588	-	AHA_2716	-	spermidine N(1)-acetyltransferase
2643	 65.59	0	3051718..3052368	-	216	117619866	-	AHA_2717	-	inner membrane protein YqjA
2644	 63.76	0	3052599..3054182	-	527	117620701	-	AHA_2718	-	CHASE4 domain-contain protein
2645	 64.68	0	3054404..3055360	+	318	117621001	-	AHA_2719	-	hypothetical protein
2646	 57.37	0	3055495..3056451	+	318	117618310	-	AHA_2720	-	DNA-binding protein
2647	 66.11	0	3057209..3058462	-	417	117617834	-	AHA_2721	-	hypothetical protein
2648	 65.64	0	3058555..3060213	-	552	117619460	leuA-2	AHA_2722	-	2-isopropylmalate synthase
2649	 64.07	0	3060699..3063935	-	1078	117618944	carB	AHA_2723	-	carbamoyl phosphate synthase large subunit
2650	 60.42	0	3063952..3065088	-	378	117618924	carA	AHA_2724	-	carbamoyl-phosphate synthase, small subunit
2651	 64.54	0	3065777..3066670	-	297	117618237	dapB	AHA_2725	-	dihydrodipicolinate reductase
2652	 66.22	0	3066900..3068234	+	444	117621100	-	AHA_2726	-	Na+/H+ antiporter family protein
2653	 67.17	0	3068367..3068966	+	199	117621461	-	AHA_2727	-	5,10-methenyltetrahydrofolate synthetase
2654	 61.47	0	3069152..3069805	+	217	117620736	rpiA	AHA_2728	-	ribose 5-phosphate isomerase A
2655	 61.67	0	3069808..3069927	+	39	117619768	-	AHA_2729	-	ribose-5-phosphate isomerase A
2656	 60.13	0	3069896..3070048	+	50	117619355	-	AHA_2730	-	ribose-5-phosphate isomerase A
2657	 59.79	0	3070152..3071489	+	445	117619317	-	AHA_2731	-	D-3-phosphoglycerate dehydrogenase
2658	 62.99	0	3071696..3072076	-	126	117618853	dgkA	AHA_2732	-	diacylglycerol kinase
2659	 64.98	0	3072232..3073296	+	354	162139471	-	AHA_2733	-	phospho-2-dehydro-3-deoxyheptonate aldolase
2660	 66.88	0	3073303..3073761	+	152	117619704	-	AHA_2734	-	aminoglycoside 6'-N-acetyltransferase Iz
2661	 69.60	+1	3073783..3074532	-	249	117621103	-	AHA_2735	-	vitamin B12 import ATP-binding protein BtuD
2662	 69.44	+1	3074555..3075562	-	335	117620632	-	AHA_2736	-	vtamin B12-transporter permease
2663	 64.62	0	3075663..3076394	-	243	117618256	-	AHA_2737	-	extracellular solute-binding protein, putative
2664	 56.58	-1	3076508..3076864	+	118	117617845	-	AHA_2738	-	transmembrane signal peptide protein
2665	 62.98	0	3076925..3078064	+	379	117619466	-	AHA_2739	-	pilus retraction protein PilT
2666	 62.26	0	3078348..3079619	+	423	117618951	glgC-2	AHA_2740	-	glucose-1-phosphate adenylyltransferase
2667	 67.03	0	3079686..3080234	+	182	117618607	-	AHA_2741	-	hypothetical protein
2668	 67.08	0	3080349..3080591	-	80	117620423	-	AHA_2742	-	LuxR family transcriptional regulator
2669	 65.61	0	3080588..3082861	-	757	117618716	feoB	AHA_2743	-	ferrous iron transport protein B
2670	 57.46	0	3082917..3083144	-	75	117620172	-	AHA_2744	-	hypothetical protein
2671	 61.07	0	3083219..3083593	+	124	117619391	yciH	AHA_2745	-	translation initation factor SUI1, putative
2672	 63.98	0	3083850..3084407	+	185	117618751	-	AHA_2746	-	integral membrane protein
2673	 69.10	+1	3084439..3085548	+	369	117618266	-	AHA_2747	-	hypothetical protein
2674	 67.76	+1	3085541..3086548	+	335	117617615	-	AHA_2748	-	hypothetical protein
2675	 67.27	0	3086545..3087042	+	165	117621266	-	AHA_2749	-	hypothetical protein
2676	 65.46	0	3087116..3087862	+	248	117620522	-	AHA_2750	-	hypothetical protein
2677	 61.58	0	3087964..3088710	+	248	117619459	-	AHA_2751	-	hypothetical protein
2678	 68.15	+1	3088772..3089785	-	337	117619016	-	AHA_2752	-	GGDEF domain-containing protein
2679	 59.55	0	3090472..3090780	-	102	117618076	-	AHA_2753	-	hypothetical protein
2680	 30.52	-2	3092623..3094152	+	509	117618520	-	AHA_2754	-	HD domain-containing protein
2681	 66.67	0	3094521..3094703	-	60	117621375	-	AHA_2755	-	hypothetical protein
2682	 62.02	0	3094830..3096206	-	458	117617683	cysS	AHA_2756	-	cysteinyl-tRNA synthetase
2683	 60.24	0	3096397..3096894	+	165	117620903	ppiB	AHA_2757	-	peptidyl-prolyl cis-trans isomerase B
2684	 67.82	+1	3096884..3097579	+	231	117621348	-	AHA_2758	-	HIT family protein, putative
2685	 65.56	0	3097576..3098301	+	241	117619972	lpxH	AHA_2759	-	UDP-2,3-diacylglucosamine hydrolase
2686	 64.78	0	3098388..3099341	-	317	117620456	-	AHA_2760	-	protein NrfD
2687	 65.47	0	3099390..3100058	-	222	117618154	-	AHA_2761	-	4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
2688	 66.03	0	3100055..3100684	-	209	117620521	-	AHA_2762	-	formate-dependent nitrite reductase
2689	 58.01	0	3100834..3101445	-	203	117619392	-	AHA_2763	-	cytochrome c553
2690	 62.41	0	3101576..3103807	+	743	117619730	-	AHA_2764	-	deCa-heme c-type cytochrome
2691	 64.61	0	3103864..3104835	+	323	117618857	-	AHA_2765	-	nitrate/TMAO reductase
2692	 64.31	0	3104847..3106838	+	663	117620600	-	AHA_2766	-	outer membrane protein
2693	 64.31	0	3106994..3109075	-	693	117621079	-	AHA_2767	-	chemotaxis transducer, putative
2694	 54.65	-1	3109630..3110919	+	429	117617928	-	AHA_2768	-	methyl-accepting chemotaxis protein
2695	 58.02	0	3111643..3112197	-	184	117618413	pgsA	AHA_2772	-	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase
62.23	MEAN

5.38	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.