IslandPathversion 1.0

IslandPath Analysis: Aeromonas hydrophila subsp. hydrophila ATCC 7966



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 62.23 STD DEV: 5.38
Aeromonas hydrophila subsp. hydrophila ATCC 7966, complete genome - 1..4744448
4122 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2363	 62.28	0	2675933..2677321	+	462	117618173	-	AHA_2430	-	divalent anion:Na+ symporter (DASS) family protein
2364	 59.19	0	2677574..2680048	-	824	117618138	-	AHA_2431	-	maltodextrin phosphorylase
2365	 51.72	-1	2680434..2680694	-	86	117618591	-	AHA_2432	-	hypothetical protein
2366	 59.33	0	2680877..2681353	+	158	117619080	-	AHA_2433	-	putative cell division inhibitor
2367	 60.99	0	2681773..2683569	-	598	117620136	-	AHA_2434	-	fumarate hydratase, class I
2368	 63.90	0	2683506..2684879	+	457	117618748	pabB	AHA_2435	-	para-aminobenzoate synthase, component I
2369	 65.61	0	2684927..2685493	+	188	117619809	-	AHA_2436	-	MutT/nudix family protein
2370	 60.66	0	2685709..2687007	+	432	117620369	-	AHA_2437	-	serine transporter family protein
2371	 63.15	0	2687428..2688678	-	416	117618296	-	AHA_2438	-	serine/threonine transporter SstT
2372	 61.74	0	2689016..2690944	+	642	117620919	-	AHA_2439	-	DNA helicase
2373	 57.15	0	2691510..2693432	+	640	117619053	-	AHA_2440	-	PrkA serine kinase
2374	 57.08	0	2693456..2694727	+	423	117618172	-	AHA_2441	-	hypothetical protein
2375	 56.52	-1	2694738..2696255	+	505	117618063	-	AHA_2442	-	hypothetical protein
2376	 57.42	0	2696320..2697033	-	237	117617873	-	AHA_2443	-	fatty acid metabolism regulator
2377	 60.91	0	2697368..2698948	+	526	117619339	nhaB	AHA_2444	-	sodium/proton antiporter
2378	 60.92	0	2699034..2699555	+	173	117618780	dsbB	AHA_2445	-	disulfide bond formation protein DsbB
2379	 57.34	0	2699642..2700295	-	217	117620265	-	AHA_2446	-	DedA protein
2380	 64.44	0	2700453..2700722	-	89	117621399	-	AHA_2447	-	hypothetical protein
2381	 63.24	0	2700719..2702731	-	670	117621062	uvrB	AHA_2448	-	excinuclease ABC subunit B
2382	 64.23	0	2703718..2705403	+	561	117620580	-	AHA_2450	-	hypothetical protein
2383	 63.21	0	2705621..2707153	+	510	117618574	-	AHA_2451	-	lytic transglycosylase, catalytic
2384	 65.01	0	2707384..2708349	+	321	117618965	-	AHA_2452	-	hypothetical protein
2385	 64.50	0	2708392..2708853	+	153	117619166	-	AHA_2453	-	hypothetical protein
2386	 65.30	0	2708863..2710395	+	510	117617789	-	AHA_2454	-	TctA protein
2387	 69.97	+1	2710474..2711139	-	221	117620740	-	AHA_2455	-	transcriptional regulatory protein CitT
2388	 66.04	0	2711140..2712723	-	527	117621232	dpiB	AHA_2456	-	sensor histidine kinase DpiB
2389	 64.89	0	2712720..2713955	-	411	117619637	-	AHA_2457	-	Mlc protein
2390	 64.09	0	2714063..2715730	-	555	117620060	-	AHA_2458	-	methyl-accepting chemotaxis protein
2391	 61.98	0	2715742..2716317	+	191	117619771	-	AHA_2459	-	SecC motif-containing protein
2392	 65.42	0	2716511..2718190	+	559	117620483	glpA	AHA_2460	-	sn-glycerol-3-phosphate dehydrogenase subunit A
2393	 67.53	0	2718180..2719460	+	426	117618810	-	AHA_2461	-	anaerobic glycerol-3-phosphate dehydrogenase subunit B
2394	 61.35	0	2719512..2720714	+	400	117619508	glpC	AHA_2462	-	sn-glycerol-3-phosphate dehydrogenase subunit C
2395	 64.28	0	2720802..2731490	-	3562	117617760	-	AHA_2463	-	type I secretion target GGXGXDXXX repeat-containing protein
2396	 63.42	0	2732209..2733654	+	481	117618319	nrfA	AHA_2464	-	cytochrome c nitrite reductase
2397	 62.28	0	2733706..2734320	+	204	117620674	-	AHA_2465	-	cytochrome c-type protein NrfB
2398	 63.64	0	2734317..2735009	+	230	117621271	-	AHA_2466	-	4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
2399	 62.90	0	2735006..2735962	+	318	117620614	-	AHA_2467	-	protein NrfD
2400	 66.36	0	2736112..2738073	+	653	117621267	ccmF-2	AHA_2468	-	cytochrome c-type biogenesis protein CcmF
2401	 66.33	0	2738070..2738669	+	199	117620509	-	AHA_2469	-	thiol:disulfide interchange protein DsbE
2402	 68.26	+1	2738666..2739856	+	396	117620024	-	AHA_2470	-	formate-dependent nitrite reductase complex NrfF subunit
2403	 62.72	0	2739994..2740449	+	151	117619496	-	AHA_2471	-	MutT/nudix family protein
2404	 63.84	0	2740852..2741772	+	306	117618941	-	AHA_2472	-	D-alanyl-D-alanine carboxypeptidase family protein
2405	 70.34	+1	2741866..2743416	-	516	117618336	-	AHA_2473	-	dimodular nonribosomal peptide synthetase
2406	 67.07	0	2743413..2749607	-	2064	117617721	-	AHA_2474	-	nonribosomal peptide synthetase
2407	 68.27	+1	2749724..2750473	-	249	117618245	-	AHA_2475	-	2,3-dihydroxybenzoate-2,3-dehydrogenase
2408	 67.41	0	2750503..2753604	-	1033	117621291	-	AHA_2476	-	nonribosomal peptide synthetase
2409	 64.83	0	2753601..2754524	-	307	117620709	-	AHA_2477	-	isochorismatase
2410	 66.73	0	2754548..2756209	-	553	117620119	entE	AHA_2478	-	enterobactin synthase subunit E
2411	 66.50	0	2756286..2757479	-	397	117619131	-	AHA_2479	-	isochorismate synthases
2412	 62.86	0	2757805..2758356	+	183	117618633	-	AHA_2480	-	hypothetical protein
2413	 65.07	0	2758502..2760502	+	666	117619594	-	AHA_2481	-	hypothetical protein
2414	 62.12	0	2760580..2761854	-	424	117620025	glgC-1	AHA_2482	-	glucose-1-phosphate adenylyltransferase
2415	 63.07	0	2762043..2763683	+	546	117618894	-	AHA_2484	-	GGDEF/eal domain-containing protein
2416	 60.40	0	2763646..2764140	-	164	117619591	-	AHA_2483	-	hypothetical protein
2417	 58.68	0	2764309..2764671	-	120	117618424	-	AHA_2485	-	hypothetical protein
2418	 63.45	0	2764858..2766162	-	434	117617752	-	AHA_2486	-	inosine-guanosine kinase
2419	 66.67	0	2766342..2766734	-	130	117621398	-	AHA_2487	-	hypothetical protein
2420	 63.35	0	2766807..2767832	-	341	117620570	hemH	AHA_2488	-	ferrochelatase
2421	 60.93	0	2767896..2768540	-	214	117620262	-	AHA_2489	-	adenylate kinase
2422	 61.06	0	2768795..2770720	-	641	117620628	htpG	AHA_2490	-	heat shock protein 90
2423	 65.51	0	2770954..2771556	-	200	117620825	recR	AHA_2491	-	recombination protein RecR
2424	 66.78	0	2771682..2772539	-	285	117621413	fdhD-2	AHA_2492	-	formate dehydrogenase family accessory protein FdhD
2425	 63.33	0	2772551..2774680	-	709	117617665	-	AHA_2493	-	formate hydrogenlyase transcriptional activator
2426	 53.63	-1	2775035..2775433	-	132	117617975	-	AHA_2494	-	hypothetical protein
2427	 62.14	0	2775515..2777659	-	714	117618564	fdhA	AHA_2495	-	formate dehydrogenase, alpha subunit, selenocysteine-containing
2428	 65.33	0	2777706..2778305	-	199	117620413	-	AHA_2496	-	iron-sulfur cluster-binding protein
2429	 31.56	-2	2779070..2780818	+	582	117618788	-	AHA_2497	-	hypothetical protein
2430	 63.67	0	2781291..2783159	+	622	117621412	trkD	AHA_2498	-	potassium transport protein Kup
2431	 64.86	0	2783748..2784413	+	221	117619673	hyfA	AHA_2499	-	hydrogenase-4 component A
2432	 64.16	0	2784413..2786284	+	623	117619567	-	AHA_2500	-	hydrogenase 4 subunit B
2433	 64.36	0	2786286..2787239	+	317	117619501	-	AHA_2501	-	hydrogenase-4 component C
2434	 63.18	0	2787320..2789038	+	572	117618926	-	AHA_2502	-	hydrogenase-4 component G
2435	 63.98	0	2789048..2789605	+	185	117617630	-	AHA_2503	-	hydrogenase-4 component H
2436	 64.09	0	2789605..2790420	+	271	117617723	-	AHA_2504	-	hydrogenase-4 component I
2437	 58.70	0	2790413..2790826	+	137	117620555	-	AHA_2505	-	formate hydrogenlyase maturation protein HycH
2438	 58.43	0	2790826..2791335	+	169	117618210	hycI	AHA_2506	-	hydrogenase 3 maturation protease
2439	 64.02	0	2791890..2793326	+	478	117618180	selA	AHA_2508	-	selenocysteine synthase
2440	 64.38	0	2793331..2795214	+	627	117618347	selB	AHA_2509	-	selenocysteine-specific translation elongation factor
2441	 64.62	0	2795211..2797649	+	812	117621137	hypF	AHA_2510	-	[NiFe] hydrogenase maturation protein HypF
2442	 58.73	0	2797655..2797906	+	83	117621569	hypC	AHA_2511	-	hydrogenase assembly chaperone HypC/HupF
2443	 63.63	0	2797900..2799018	+	372	117619804	hypD	AHA_2512	-	hydrogenase expression/formation protein HypD
2444	 63.18	0	2799015..2800019	+	334	117620330	hypE	AHA_2513	-	hydrogenase expression/formation protein HypE
2445	 62.57	0	2800089..2800430	+	113	117619238	hypA	AHA_2514	-	hydrogenase nickel insertion protein HypA
2446	 60.62	0	2800432..2801523	+	363	117617567	-	AHA_2515	-	hydrogenase nickel incorporation protein HypB
2447	 64.33	0	2801859..2802500	-	213	117618094	-	AHA_2516	-	ATPase protein DppE
2448	 67.43	0	2802500..2803288	-	262	117618188	-	AHA_2517	-	ABC nickel/di-oligopepetide transporter, ATP binding subunit
2449	 66.17	0	2803392..2804204	-	270	117618761	-	AHA_2518	-	ABC nickel/di-oligopepetide transporter, permease subunit
2450	 64.08	0	2804194..2805198	-	334	117621089	-	AHA_2519	-	ABC nickel/di-oligopepetide transporter, permease subunit
2451	 64.22	0	2805183..2806814	-	543	117618545	-	AHA_2520	-	ABC transporter, periplasmic nickel/di-oligopepetide binding protein
2452	 66.48	0	2806922..2807470	-	182	117619092	-	AHA_2521	-	hydrogenase 2-specific chaperone
2453	 66.48	0	2807452..2807982	-	176	117617881	hybD	AHA_2522	-	hydrogenase 2 maturation endopeptidase
2454	 62.85	0	2807982..2809685	-	567	117618428	hybC	AHA_2523	-	hydrogenase 2 large subunit
2455	 61.03	0	2809682..2810869	-	395	117620798	-	AHA_2524	-	putative hydrogenase 2 b cytochrome subunit
2456	 63.94	0	2810862..2811887	-	341	117621401	-	AHA_2525	-	hydrogenase 2 protein HybA
2457	 64.29	0	2811890..2813023	-	377	117621173	-	AHA_2526	-	hydrogenase 2 small subunit
2458	 60.98	0	2813759..2814127	+	122	117619711	-	AHA_2527	-	hypothetical protein
2459	 64.17	0	2814124..2814444	+	106	117620108	-	AHA_2528	-	anti-anti-sigma factor family protein
2460	 64.86	0	2814431..2816587	+	718	117618587	-	AHA_2529	-	putative chemotaxis protein
2461	 62.85	0	2816631..2818307	+	558	117618733	-	AHA_2530	-	methyl-accepting chemotaxis protein
2462	 64.77	0	2818317..2818844	+	175	117619301	cheW-3	AHA_2531	-	chemotaxis protein CheW
62.23	MEAN

5.38	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.