IslandPathversion 1.0

IslandPath Analysis: Aeromonas hydrophila subsp. hydrophila ATCC 7966



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 62.23 STD DEV: 5.38
Aeromonas hydrophila subsp. hydrophila ATCC 7966, complete genome - 1..4744448
4122 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2304	 60.25	0	2611743..2613191	-	482	117620300	-	AHA_2363	-	carbohydrate binding domain-containing protein
2305	 66.42	0	2613508..2614737	-	409	117620496	-	AHA_2364	-	hypothetical protein
2306	 61.47	0	2614888..2615541	+	217	117620920	-	AHA_2365	-	PhnA protein
2307	 45.37	-2	2615783..2615890	+	35	117619474	-	AHA_2366	-	hypothetical protein
2308	 64.95	0	2616212..2617489	+	425	117618889	-	AHA_2367	-	hypothetical protein
2309	 67.00	0	2617562..2618449	-	295	117618260	-	AHA_2368	-	putative phenazine biosynthesis protein PhzF
2310	 60.29	0	2618930..2619760	-	276	117619266	-	AHA_2369	-	hypothetical protein
2311	 50.98	-2	2619757..2620266	-	169	117620725	-	AHA_2370	-	Vco28
2312	 56.79	-1	2620319..2620804	-	161	117618192	-	AHA_2371	-	putative acetyltransferase
2313	 49.84	-2	2620872..2621483	-	203	117619999	-	AHA_2372	-	ThiJ/pfpI family protein
2314	 55.69	-1	2621548..2622048	-	166	117621144	def	AHA_2373	-	peptide deformylase
2315	 58.33	0	2622075..2622530	-	151	117621316	-	AHA_2374	-	histone acetyltransferase HPA2
2316	 62.21	0	2622834..2623259	-	141	117619421	-	AHA_2375	-	antibiotic biosynthesis monooxygenase family protein
2317	 65.08	0	2623289..2623666	-	125	117619427	-	AHA_2376	-	RplA family protein
2318	 63.89	0	2623859..2628286	-	1475	117618952	mukB	AHA_2377	-	cell division protein MukB
2319	 60.98	0	2628314..2629051	-	245	117618332	-	AHA_2378	-	condesin subunit E
2320	 61.89	0	2629032..2630351	-	439	117621233	-	AHA_2379	-	condesin subunit F
2321	 60.49	0	2630429..2631205	-	258	117620256	-	AHA_2380	-	SmtA protein
2322	 63.59	0	2631496..2632275	+	259	117619411	-	AHA_2381	-	integral membrane protein
2323	 61.38	0	2632411..2633166	+	251	117618960	tpiA-1	AHA_2382	-	triosephosphate isomerase
2324	 61.32	0	2633314..2634285	+	323	117618971	pfkA	AHA_2383	-	6-phosphofructokinase
2325	 65.63	0	2635487..2636743	+	418	117618852	-	AHA_2384	-	M20D family peptidase
2326	 63.00	0	2636825..2637505	-	226	117617782	-	AHA_2385	-	HAD-superfamily (subfamily IA) hydrolase
2327	 65.93	0	2637514..2639010	-	498	117621471	-	AHA_2386	-	cytosol aminopeptidase
2328	 64.58	0	2640664..2642727	+	687	117621011	glgX-1	AHA_2395	-	glycogen debranching enzyme GlgX
2329	 68.47	+1	2642798..2643517	-	239	117620599	-	AHA_2396	-	hypothetical protein
2330	 65.69	0	2643727..2645364	-	545	117619202	-	AHA_2397	-	homology with RecF protein
2331	 67.68	+1	2645626..2646513	-	295	117618680	-	AHA_2398	-	helix-turn-helix, AraC type
2332	 65.52	0	2646549..2647592	+	347	117618261	-	AHA_2399	-	membrane protein
2333	 68.65	+1	2647650..2648504	+	284	117621346	-	AHA_2400	-	LysR family transcriptional regulator
2334	 64.23	0	2648588..2649367	-	259	117617625	-	AHA_2401	-	hypothetical protein
2335	 66.80	0	2649575..2650336	-	253	117620945	-	AHA_2402	-	DTW protein
2336	 64.73	0	2650504..2650917	+	137	117620583	-	AHA_2403	-	27 kDa antigen Cfp30B
2337	 61.72	0	2650996..2651985	-	329	117619780	ddl	AHA_2404	-	D-alanyl-alanine synthetase A
2338	 63.07	0	2652186..2652881	-	231	117620447	-	AHA_2405	-	SM-20 domain-containing protein
2339	 61.43	0	2653082..2653558	+	158	117618617	-	AHA_2406	-	peroxiredoxin HYR1
2340	 65.66	0	2653718..2655103	+	461	117619321	-	AHA_2407	-	putative ATP-dependent RNA helicase RhlE
2341	 66.24	0	2655155..2655619	-	154	117617476	-	AHA_2408	-	GMP synthase (glutamine-hydrolyzing)
2342	 67.07	0	2655637..2656128	-	163	117618064	-	AHA_2409	-	acetyltransferase
2343	 65.17	0	2656162..2656494	-	110	117618628	-	AHA_2410	-	hypothetical protein
2344	 65.48	0	2656667..2657512	-	281	117621472	-	AHA_2411	-	hypothetical protein
2345	 63.00	0	2657869..2658441	+	190	117619864	-	AHA_2412	-	adenylate cyclase
2346	 64.81	0	2658399..2658830	+	143	117620316	-	AHA_2413	-	nudix family protein, MutT subfamily
2347	 66.47	0	2659000..2659506	+	168	117619207	-	AHA_2414	-	acetyltransferase
2348	 63.73	0	2659567..2660892	+	441	117619733	gldA	AHA_2415	-	glycerol dehydrogenase
2349	 62.09	0	2661009..2661314	+	101	117618123	-	AHA_2416	-	antibiotic biosynthesis monooxygenase family protein
2350	 64.00	0	2661521..2662384	-	287	117618597	pdxY-2	AHA_2417	-	pyridoxal kinase
2351	 66.67	0	2662991..2663746	-	251	117617678	-	AHA_2418	-	hypothetical protein
2352	 60.99	0	2663825..2664388	-	187	117618111	-	AHA_2419	-	hypothetical protein
2353	 62.68	0	2664707..2665057	+	116	117620445	-	AHA_2420	-	PHA granule-associated protein
2354	 64.37	0	2665151..2666935	+	594	117617651	-	AHA_2421	-	poly-beta-hydroxybutyrate polymerase
2355	 66.17	0	2666932..2667336	+	134	117618527	-	AHA_2422	-	enoyl-CoA hydratase
2356	 58.97	0	2667526..2667759	+	77	117618132	-	AHA_2423	-	hypothetical protein
2357	 61.27	0	2668020..2668556	-	178	117620461	-	AHA_2424	-	hypothetical protein
2358	 64.95	0	2668644..2670395	-	583	117619962	-	AHA_2425	-	drug efflux ABC transporter ATP-binding and permease subunits
2359	 58.12	0	2670392..2670508	-	38	117620995	-	AHA_2426	-	hypothetical protein
2360	 63.90	0	2670505..2672241	-	578	117620443	-	AHA_2427	-	ABC transporter, ATP-binding protein
2361	 61.28	0	2672383..2675184	-	933	117617779	-	AHA_2428	-	sensory box histidine kinase/response regulator
2362	 55.24	-1	2675339..2675767	+	142	117621303	-	AHA_2429	-	thioredoxin 2
2363	 62.28	0	2675933..2677321	+	462	117618173	-	AHA_2430	-	divalent anion:Na+ symporter (DASS) family protein
2364	 59.19	0	2677574..2680048	-	824	117618138	-	AHA_2431	-	maltodextrin phosphorylase
2365	 51.72	-1	2680434..2680694	-	86	117618591	-	AHA_2432	-	hypothetical protein
2366	 59.33	0	2680877..2681353	+	158	117619080	-	AHA_2433	-	putative cell division inhibitor
2367	 60.99	0	2681773..2683569	-	598	117620136	-	AHA_2434	-	fumarate hydratase, class I
2368	 63.90	0	2683506..2684879	+	457	117618748	pabB	AHA_2435	-	para-aminobenzoate synthase, component I
2369	 65.61	0	2684927..2685493	+	188	117619809	-	AHA_2436	-	MutT/nudix family protein
2370	 60.66	0	2685709..2687007	+	432	117620369	-	AHA_2437	-	serine transporter family protein
2371	 63.15	0	2687428..2688678	-	416	117618296	-	AHA_2438	-	serine/threonine transporter SstT
2372	 61.74	0	2689016..2690944	+	642	117620919	-	AHA_2439	-	DNA helicase
2373	 57.15	0	2691510..2693432	+	640	117619053	-	AHA_2440	-	PrkA serine kinase
2374	 57.08	0	2693456..2694727	+	423	117618172	-	AHA_2441	-	hypothetical protein
2375	 56.52	-1	2694738..2696255	+	505	117618063	-	AHA_2442	-	hypothetical protein
2376	 57.42	0	2696320..2697033	-	237	117617873	-	AHA_2443	-	fatty acid metabolism regulator
2377	 60.91	0	2697368..2698948	+	526	117619339	nhaB	AHA_2444	-	sodium/proton antiporter
2378	 60.92	0	2699034..2699555	+	173	117618780	dsbB	AHA_2445	-	disulfide bond formation protein DsbB
2379	 57.34	0	2699642..2700295	-	217	117620265	-	AHA_2446	-	DedA protein
2380	 64.44	0	2700453..2700722	-	89	117621399	-	AHA_2447	-	hypothetical protein
2381	 63.24	0	2700719..2702731	-	670	117621062	uvrB	AHA_2448	-	excinuclease ABC subunit B
2382	 64.23	0	2703718..2705403	+	561	117620580	-	AHA_2450	-	hypothetical protein
2383	 63.21	0	2705621..2707153	+	510	117618574	-	AHA_2451	-	lytic transglycosylase, catalytic
2384	 65.01	0	2707384..2708349	+	321	117618965	-	AHA_2452	-	hypothetical protein
2385	 64.50	0	2708392..2708853	+	153	117619166	-	AHA_2453	-	hypothetical protein
2386	 65.30	0	2708863..2710395	+	510	117617789	-	AHA_2454	-	TctA protein
2387	 69.97	+1	2710474..2711139	-	221	117620740	-	AHA_2455	-	transcriptional regulatory protein CitT
2388	 66.04	0	2711140..2712723	-	527	117621232	dpiB	AHA_2456	-	sensor histidine kinase DpiB
2389	 64.89	0	2712720..2713955	-	411	117619637	-	AHA_2457	-	Mlc protein
2390	 64.09	0	2714063..2715730	-	555	117620060	-	AHA_2458	-	methyl-accepting chemotaxis protein
2391	 61.98	0	2715742..2716317	+	191	117619771	-	AHA_2459	-	SecC motif-containing protein
2392	 65.42	0	2716511..2718190	+	559	117620483	glpA	AHA_2460	-	sn-glycerol-3-phosphate dehydrogenase subunit A
2393	 67.53	0	2718180..2719460	+	426	117618810	-	AHA_2461	-	anaerobic glycerol-3-phosphate dehydrogenase subunit B
2394	 61.35	0	2719512..2720714	+	400	117619508	glpC	AHA_2462	-	sn-glycerol-3-phosphate dehydrogenase subunit C
2395	 64.28	0	2720802..2731490	-	3562	117617760	-	AHA_2463	-	type I secretion target GGXGXDXXX repeat-containing protein
2396	 63.42	0	2732209..2733654	+	481	117618319	nrfA	AHA_2464	-	cytochrome c nitrite reductase
2397	 62.28	0	2733706..2734320	+	204	117620674	-	AHA_2465	-	cytochrome c-type protein NrfB
2398	 63.64	0	2734317..2735009	+	230	117621271	-	AHA_2466	-	4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
2399	 62.90	0	2735006..2735962	+	318	117620614	-	AHA_2467	-	protein NrfD
2400	 66.36	0	2736112..2738073	+	653	117621267	ccmF-2	AHA_2468	-	cytochrome c-type biogenesis protein CcmF
2401	 66.33	0	2738070..2738669	+	199	117620509	-	AHA_2469	-	thiol:disulfide interchange protein DsbE
2402	 68.26	+1	2738666..2739856	+	396	117620024	-	AHA_2470	-	formate-dependent nitrite reductase complex NrfF subunit
2403	 62.72	0	2739994..2740449	+	151	117619496	-	AHA_2471	-	MutT/nudix family protein
62.23	MEAN

5.38	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.