IslandPathversion 1.0

IslandPath Analysis: Aeromonas hydrophila subsp. hydrophila ATCC 7966



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 62.23 STD DEV: 5.38
Aeromonas hydrophila subsp. hydrophila ATCC 7966, complete genome - 1..4744448
4122 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2299	 63.75	0	2607712..2608122	-	136	117620881	-	AHA_2358	-	hypothetical protein
2300	 62.96	0	2608344..2609639	+	431	117618387	-	AHA_2359	-	sensory box protein
2301	 68.73	+1	2609693..2610322	-	209	117619743	-	AHA_2360	-	phosphoglycerate mutase
2302	 60.40	0	2610372..2610770	-	132	117621349	-	AHA_2361	-	hypothetical protein
2303	 59.58	0	2610907..2611287	-	126	117618819	-	AHA_2362	-	glyoxalase family protein
2304	 60.25	0	2611743..2613191	-	482	117620300	-	AHA_2363	-	carbohydrate binding domain-containing protein
2305	 66.42	0	2613508..2614737	-	409	117620496	-	AHA_2364	-	hypothetical protein
2306	 61.47	0	2614888..2615541	+	217	117620920	-	AHA_2365	-	PhnA protein
2307	 45.37	-2	2615783..2615890	+	35	117619474	-	AHA_2366	-	hypothetical protein
2308	 64.95	0	2616212..2617489	+	425	117618889	-	AHA_2367	-	hypothetical protein
2309	 67.00	0	2617562..2618449	-	295	117618260	-	AHA_2368	-	putative phenazine biosynthesis protein PhzF
2310	 60.29	0	2618930..2619760	-	276	117619266	-	AHA_2369	-	hypothetical protein
2311	 50.98	-2	2619757..2620266	-	169	117620725	-	AHA_2370	-	Vco28
2312	 56.79	-1	2620319..2620804	-	161	117618192	-	AHA_2371	-	putative acetyltransferase
2313	 49.84	-2	2620872..2621483	-	203	117619999	-	AHA_2372	-	ThiJ/pfpI family protein
2314	 55.69	-1	2621548..2622048	-	166	117621144	def	AHA_2373	-	peptide deformylase
2315	 58.33	0	2622075..2622530	-	151	117621316	-	AHA_2374	-	histone acetyltransferase HPA2
2316	 62.21	0	2622834..2623259	-	141	117619421	-	AHA_2375	-	antibiotic biosynthesis monooxygenase family protein
2317	 65.08	0	2623289..2623666	-	125	117619427	-	AHA_2376	-	RplA family protein
2318	 63.89	0	2623859..2628286	-	1475	117618952	mukB	AHA_2377	-	cell division protein MukB
2319	 60.98	0	2628314..2629051	-	245	117618332	-	AHA_2378	-	condesin subunit E
2320	 61.89	0	2629032..2630351	-	439	117621233	-	AHA_2379	-	condesin subunit F
2321	 60.49	0	2630429..2631205	-	258	117620256	-	AHA_2380	-	SmtA protein
2322	 63.59	0	2631496..2632275	+	259	117619411	-	AHA_2381	-	integral membrane protein
2323	 61.38	0	2632411..2633166	+	251	117618960	tpiA-1	AHA_2382	-	triosephosphate isomerase
2324	 61.32	0	2633314..2634285	+	323	117618971	pfkA	AHA_2383	-	6-phosphofructokinase
2325	 65.63	0	2635487..2636743	+	418	117618852	-	AHA_2384	-	M20D family peptidase
2326	 63.00	0	2636825..2637505	-	226	117617782	-	AHA_2385	-	HAD-superfamily (subfamily IA) hydrolase
2327	 65.93	0	2637514..2639010	-	498	117621471	-	AHA_2386	-	cytosol aminopeptidase
2328	 64.58	0	2640664..2642727	+	687	117621011	glgX-1	AHA_2395	-	glycogen debranching enzyme GlgX
2329	 68.47	+1	2642798..2643517	-	239	117620599	-	AHA_2396	-	hypothetical protein
2330	 65.69	0	2643727..2645364	-	545	117619202	-	AHA_2397	-	homology with RecF protein
2331	 67.68	+1	2645626..2646513	-	295	117618680	-	AHA_2398	-	helix-turn-helix, AraC type
2332	 65.52	0	2646549..2647592	+	347	117618261	-	AHA_2399	-	membrane protein
2333	 68.65	+1	2647650..2648504	+	284	117621346	-	AHA_2400	-	LysR family transcriptional regulator
2334	 64.23	0	2648588..2649367	-	259	117617625	-	AHA_2401	-	hypothetical protein
2335	 66.80	0	2649575..2650336	-	253	117620945	-	AHA_2402	-	DTW protein
2336	 64.73	0	2650504..2650917	+	137	117620583	-	AHA_2403	-	27 kDa antigen Cfp30B
2337	 61.72	0	2650996..2651985	-	329	117619780	ddl	AHA_2404	-	D-alanyl-alanine synthetase A
2338	 63.07	0	2652186..2652881	-	231	117620447	-	AHA_2405	-	SM-20 domain-containing protein
2339	 61.43	0	2653082..2653558	+	158	117618617	-	AHA_2406	-	peroxiredoxin HYR1
2340	 65.66	0	2653718..2655103	+	461	117619321	-	AHA_2407	-	putative ATP-dependent RNA helicase RhlE
2341	 66.24	0	2655155..2655619	-	154	117617476	-	AHA_2408	-	GMP synthase (glutamine-hydrolyzing)
2342	 67.07	0	2655637..2656128	-	163	117618064	-	AHA_2409	-	acetyltransferase
2343	 65.17	0	2656162..2656494	-	110	117618628	-	AHA_2410	-	hypothetical protein
2344	 65.48	0	2656667..2657512	-	281	117621472	-	AHA_2411	-	hypothetical protein
2345	 63.00	0	2657869..2658441	+	190	117619864	-	AHA_2412	-	adenylate cyclase
2346	 64.81	0	2658399..2658830	+	143	117620316	-	AHA_2413	-	nudix family protein, MutT subfamily
2347	 66.47	0	2659000..2659506	+	168	117619207	-	AHA_2414	-	acetyltransferase
2348	 63.73	0	2659567..2660892	+	441	117619733	gldA	AHA_2415	-	glycerol dehydrogenase
2349	 62.09	0	2661009..2661314	+	101	117618123	-	AHA_2416	-	antibiotic biosynthesis monooxygenase family protein
2350	 64.00	0	2661521..2662384	-	287	117618597	pdxY-2	AHA_2417	-	pyridoxal kinase
2351	 66.67	0	2662991..2663746	-	251	117617678	-	AHA_2418	-	hypothetical protein
2352	 60.99	0	2663825..2664388	-	187	117618111	-	AHA_2419	-	hypothetical protein
2353	 62.68	0	2664707..2665057	+	116	117620445	-	AHA_2420	-	PHA granule-associated protein
2354	 64.37	0	2665151..2666935	+	594	117617651	-	AHA_2421	-	poly-beta-hydroxybutyrate polymerase
2355	 66.17	0	2666932..2667336	+	134	117618527	-	AHA_2422	-	enoyl-CoA hydratase
2356	 58.97	0	2667526..2667759	+	77	117618132	-	AHA_2423	-	hypothetical protein
2357	 61.27	0	2668020..2668556	-	178	117620461	-	AHA_2424	-	hypothetical protein
2358	 64.95	0	2668644..2670395	-	583	117619962	-	AHA_2425	-	drug efflux ABC transporter ATP-binding and permease subunits
2359	 58.12	0	2670392..2670508	-	38	117620995	-	AHA_2426	-	hypothetical protein
2360	 63.90	0	2670505..2672241	-	578	117620443	-	AHA_2427	-	ABC transporter, ATP-binding protein
2361	 61.28	0	2672383..2675184	-	933	117617779	-	AHA_2428	-	sensory box histidine kinase/response regulator
2362	 55.24	-1	2675339..2675767	+	142	117621303	-	AHA_2429	-	thioredoxin 2
2363	 62.28	0	2675933..2677321	+	462	117618173	-	AHA_2430	-	divalent anion:Na+ symporter (DASS) family protein
2364	 59.19	0	2677574..2680048	-	824	117618138	-	AHA_2431	-	maltodextrin phosphorylase
2365	 51.72	-1	2680434..2680694	-	86	117618591	-	AHA_2432	-	hypothetical protein
2366	 59.33	0	2680877..2681353	+	158	117619080	-	AHA_2433	-	putative cell division inhibitor
2367	 60.99	0	2681773..2683569	-	598	117620136	-	AHA_2434	-	fumarate hydratase, class I
2368	 63.90	0	2683506..2684879	+	457	117618748	pabB	AHA_2435	-	para-aminobenzoate synthase, component I
2369	 65.61	0	2684927..2685493	+	188	117619809	-	AHA_2436	-	MutT/nudix family protein
2370	 60.66	0	2685709..2687007	+	432	117620369	-	AHA_2437	-	serine transporter family protein
2371	 63.15	0	2687428..2688678	-	416	117618296	-	AHA_2438	-	serine/threonine transporter SstT
2372	 61.74	0	2689016..2690944	+	642	117620919	-	AHA_2439	-	DNA helicase
2373	 57.15	0	2691510..2693432	+	640	117619053	-	AHA_2440	-	PrkA serine kinase
2374	 57.08	0	2693456..2694727	+	423	117618172	-	AHA_2441	-	hypothetical protein
2375	 56.52	-1	2694738..2696255	+	505	117618063	-	AHA_2442	-	hypothetical protein
2376	 57.42	0	2696320..2697033	-	237	117617873	-	AHA_2443	-	fatty acid metabolism regulator
2377	 60.91	0	2697368..2698948	+	526	117619339	nhaB	AHA_2444	-	sodium/proton antiporter
2378	 60.92	0	2699034..2699555	+	173	117618780	dsbB	AHA_2445	-	disulfide bond formation protein DsbB
2379	 57.34	0	2699642..2700295	-	217	117620265	-	AHA_2446	-	DedA protein
2380	 64.44	0	2700453..2700722	-	89	117621399	-	AHA_2447	-	hypothetical protein
2381	 63.24	0	2700719..2702731	-	670	117621062	uvrB	AHA_2448	-	excinuclease ABC subunit B
2382	 64.23	0	2703718..2705403	+	561	117620580	-	AHA_2450	-	hypothetical protein
2383	 63.21	0	2705621..2707153	+	510	117618574	-	AHA_2451	-	lytic transglycosylase, catalytic
2384	 65.01	0	2707384..2708349	+	321	117618965	-	AHA_2452	-	hypothetical protein
2385	 64.50	0	2708392..2708853	+	153	117619166	-	AHA_2453	-	hypothetical protein
2386	 65.30	0	2708863..2710395	+	510	117617789	-	AHA_2454	-	TctA protein
2387	 69.97	+1	2710474..2711139	-	221	117620740	-	AHA_2455	-	transcriptional regulatory protein CitT
2388	 66.04	0	2711140..2712723	-	527	117621232	dpiB	AHA_2456	-	sensor histidine kinase DpiB
2389	 64.89	0	2712720..2713955	-	411	117619637	-	AHA_2457	-	Mlc protein
2390	 64.09	0	2714063..2715730	-	555	117620060	-	AHA_2458	-	methyl-accepting chemotaxis protein
2391	 61.98	0	2715742..2716317	+	191	117619771	-	AHA_2459	-	SecC motif-containing protein
2392	 65.42	0	2716511..2718190	+	559	117620483	glpA	AHA_2460	-	sn-glycerol-3-phosphate dehydrogenase subunit A
2393	 67.53	0	2718180..2719460	+	426	117618810	-	AHA_2461	-	anaerobic glycerol-3-phosphate dehydrogenase subunit B
2394	 61.35	0	2719512..2720714	+	400	117619508	glpC	AHA_2462	-	sn-glycerol-3-phosphate dehydrogenase subunit C
2395	 64.28	0	2720802..2731490	-	3562	117617760	-	AHA_2463	-	type I secretion target GGXGXDXXX repeat-containing protein
2396	 63.42	0	2732209..2733654	+	481	117618319	nrfA	AHA_2464	-	cytochrome c nitrite reductase
2397	 62.28	0	2733706..2734320	+	204	117620674	-	AHA_2465	-	cytochrome c-type protein NrfB
2398	 63.64	0	2734317..2735009	+	230	117621271	-	AHA_2466	-	4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
62.23	MEAN

5.38	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman