IslandPathversion 1.0

IslandPath Analysis: Aeromonas hydrophila subsp. hydrophila ATCC 7966



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 62.23 STD DEV: 5.38
Aeromonas hydrophila subsp. hydrophila ATCC 7966, complete genome - 1..4744448
4122 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2262	 53.54	-1	2566548..2566844	-	98	117618302	ihfA	AHA_2321	-	integration host factor, alpha subunit
2263	 61.74	0	2566848..2569244	-	798	117617875	pheT	AHA_2322	-	phenylalanyl-tRNA synthetase, beta subunit
2264	 59.76	0	2569257..2570240	-	327	117618676	pheS	AHA_2323	-	phenylalanyl-tRNA synthetase, alpha subunit
2265	 55.18	-1	2570557..2570913	-	118	117618760	rplT	AHA_2324	-	ribosomal protein L20
2266	 54.04	-1	2570929..2571126	-	65	117618221	rpmI	AHA_2325	-	ribosomal protein L35
2267	 52.94	-1	2571213..2571620	-	135	117619989	infC	AHA_2326	-	translation initiation factor IF-3
2268	 58.16	0	2571765..2573693	-	642	117621181	thrS	AHA_2327	-	threonyl-tRNA synthetase
2269	 64.22	0	2573930..2574583	-	217	117620643	-	AHA_2328	-	TPR repeat-containing protein
2270	 64.59	0	2574692..2575750	+	352	117618253	-	AHA_2329	-	radical SAM domain-containing protein
2271	 60.66	0	2576258..2579005	-	915	117617684	gyrA	AHA_2330	-	DNA gyrase, A subunit
2272	 64.32	0	2579156..2579923	+	255	117618918	ubiG	AHA_2331	-	ubiquinone biosynthesis O-methyltransferase
2273	 66.67	0	2579923..2580609	+	228	117618312	gph-1	AHA_2332	-	phosphoglycolate phosphatase
2274	 59.72	0	2581152..2583455	+	767	117620066	nrdA	AHA_2333	-	ribonucleotide-diphosphate reductase subunit alpha
2275	 59.88	0	2583522..2584655	+	377	117619492	nrdB	AHA_2334	-	ribonucleotide-diphosphate reductase subunit beta
2276	 66.26	0	2584727..2584972	+	81	117617746	-	AHA_2335	-	iron-sulfur cluster-binding protein
2277	 63.37	0	2585091..2586242	-	383	117618206	mltA	AHA_2336	-	murein transglycosylase A
2278	 63.10	0	2586393..2586644	+	83	117618688	-	AHA_2337	-	MutT/nudix family protein
2279	 64.16	0	2586669..2587826	-	385	117619137	-	AHA_2338	-	mannose-6-phosphate isomerase
2280	 63.13	0	2587912..2588760	-	282	117619939	-	AHA_2339	-	fructose permease IID component
2281	 61.82	0	2588760..2589563	-	267	117620501	-	AHA_2340	-	PTS system, fructose(mannose)-specific IIC
2282	 61.82	0	2589576..2590070	-	164	117619920	-	AHA_2341	-	pts system mannose-specific eiiab component (eiiab-man)
2283	 66.90	0	2590080..2590511	-	143	117620473	-	AHA_2342	-	PTS system mannose/fructose/sorbose family IIA subunit
2284	 65.03	0	2590517..2592283	-	588	117620807	-	AHA_2343	-	hypothetical protein
2285	 65.47	0	2592505..2593503	+	332	117621437	malI-2	AHA_2344	-	maltose regulon regulatory protein MalI
2286	 65.61	0	2593525..2594094	-	189	117618731	-	AHA_2345	-	glucose-6-phosphate isomerase
2287	 63.71	0	2594283..2596007	-	574	117621519	fruA	AHA_2346	-	PTS system, fructose-specific, IIBC component
2288	 64.85	0	2596004..2596993	-	329	117617699	-	AHA_2347	-	1-phosphofructokinase
2289	 66.30	0	2596993..2598093	-	366	117618288	-	AHA_2348	-	bifunctional fructose-specific PTS IIA/HPr protein
2290	 64.84	0	2598402..2599385	+	327	117618595	fruR	AHA_2349	-	DNA-binding transcriptional regulator FruR
2291	 66.58	0	2599692..2600885	+	397	117619230	-	AHA_2350	-	tyrosine-specific transport protein
2292	 59.51	0	2601147..2601551	+	134	117618572	-	AHA_2351	-	hypothetical protein
2293	 63.91	0	2601551..2602240	+	229	117619037	-	AHA_2352	-	hypothetical protein
2294	 65.88	0	2602347..2603747	-	466	117621566	-	AHA_2353	-	putative ATP-dependent RNA helicase RhlE
2295	 66.42	0	2604071..2604886	+	271	117619767	-	AHA_2354	-	extracellular solute-binding protein
2296	 64.10	0	2604987..2606075	-	362	117618286	aroC	AHA_2355	-	chorismate synthase
2297	 61.32	0	2606088..2607023	-	311	117619640	-	AHA_2356	-	N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase
2298	 58.29	0	2607089..2607613	+	174	117617527	-	AHA_2357	-	Smr/MutS family protein
2299	 63.75	0	2607712..2608122	-	136	117620881	-	AHA_2358	-	hypothetical protein
2300	 62.96	0	2608344..2609639	+	431	117618387	-	AHA_2359	-	sensory box protein
2301	 68.73	+1	2609693..2610322	-	209	117619743	-	AHA_2360	-	phosphoglycerate mutase
2302	 60.40	0	2610372..2610770	-	132	117621349	-	AHA_2361	-	hypothetical protein
2303	 59.58	0	2610907..2611287	-	126	117618819	-	AHA_2362	-	glyoxalase family protein
2304	 60.25	0	2611743..2613191	-	482	117620300	-	AHA_2363	-	carbohydrate binding domain-containing protein
2305	 66.42	0	2613508..2614737	-	409	117620496	-	AHA_2364	-	hypothetical protein
2306	 61.47	0	2614888..2615541	+	217	117620920	-	AHA_2365	-	PhnA protein
2307	 45.37	-2	2615783..2615890	+	35	117619474	-	AHA_2366	-	hypothetical protein
2308	 64.95	0	2616212..2617489	+	425	117618889	-	AHA_2367	-	hypothetical protein
2309	 67.00	0	2617562..2618449	-	295	117618260	-	AHA_2368	-	putative phenazine biosynthesis protein PhzF
2310	 60.29	0	2618930..2619760	-	276	117619266	-	AHA_2369	-	hypothetical protein
2311	 50.98	-2	2619757..2620266	-	169	117620725	-	AHA_2370	-	Vco28
2312	 56.79	-1	2620319..2620804	-	161	117618192	-	AHA_2371	-	putative acetyltransferase
2313	 49.84	-2	2620872..2621483	-	203	117619999	-	AHA_2372	-	ThiJ/pfpI family protein
2314	 55.69	-1	2621548..2622048	-	166	117621144	def	AHA_2373	-	peptide deformylase
2315	 58.33	0	2622075..2622530	-	151	117621316	-	AHA_2374	-	histone acetyltransferase HPA2
2316	 62.21	0	2622834..2623259	-	141	117619421	-	AHA_2375	-	antibiotic biosynthesis monooxygenase family protein
2317	 65.08	0	2623289..2623666	-	125	117619427	-	AHA_2376	-	RplA family protein
2318	 63.89	0	2623859..2628286	-	1475	117618952	mukB	AHA_2377	-	cell division protein MukB
2319	 60.98	0	2628314..2629051	-	245	117618332	-	AHA_2378	-	condesin subunit E
2320	 61.89	0	2629032..2630351	-	439	117621233	-	AHA_2379	-	condesin subunit F
2321	 60.49	0	2630429..2631205	-	258	117620256	-	AHA_2380	-	SmtA protein
2322	 63.59	0	2631496..2632275	+	259	117619411	-	AHA_2381	-	integral membrane protein
2323	 61.38	0	2632411..2633166	+	251	117618960	tpiA-1	AHA_2382	-	triosephosphate isomerase
2324	 61.32	0	2633314..2634285	+	323	117618971	pfkA	AHA_2383	-	6-phosphofructokinase
2325	 65.63	0	2635487..2636743	+	418	117618852	-	AHA_2384	-	M20D family peptidase
2326	 63.00	0	2636825..2637505	-	226	117617782	-	AHA_2385	-	HAD-superfamily (subfamily IA) hydrolase
2327	 65.93	0	2637514..2639010	-	498	117621471	-	AHA_2386	-	cytosol aminopeptidase
2328	 64.58	0	2640664..2642727	+	687	117621011	glgX-1	AHA_2395	-	glycogen debranching enzyme GlgX
2329	 68.47	+1	2642798..2643517	-	239	117620599	-	AHA_2396	-	hypothetical protein
2330	 65.69	0	2643727..2645364	-	545	117619202	-	AHA_2397	-	homology with RecF protein
2331	 67.68	+1	2645626..2646513	-	295	117618680	-	AHA_2398	-	helix-turn-helix, AraC type
2332	 65.52	0	2646549..2647592	+	347	117618261	-	AHA_2399	-	membrane protein
2333	 68.65	+1	2647650..2648504	+	284	117621346	-	AHA_2400	-	LysR family transcriptional regulator
2334	 64.23	0	2648588..2649367	-	259	117617625	-	AHA_2401	-	hypothetical protein
2335	 66.80	0	2649575..2650336	-	253	117620945	-	AHA_2402	-	DTW protein
2336	 64.73	0	2650504..2650917	+	137	117620583	-	AHA_2403	-	27 kDa antigen Cfp30B
2337	 61.72	0	2650996..2651985	-	329	117619780	ddl	AHA_2404	-	D-alanyl-alanine synthetase A
2338	 63.07	0	2652186..2652881	-	231	117620447	-	AHA_2405	-	SM-20 domain-containing protein
2339	 61.43	0	2653082..2653558	+	158	117618617	-	AHA_2406	-	peroxiredoxin HYR1
2340	 65.66	0	2653718..2655103	+	461	117619321	-	AHA_2407	-	putative ATP-dependent RNA helicase RhlE
2341	 66.24	0	2655155..2655619	-	154	117617476	-	AHA_2408	-	GMP synthase (glutamine-hydrolyzing)
2342	 67.07	0	2655637..2656128	-	163	117618064	-	AHA_2409	-	acetyltransferase
2343	 65.17	0	2656162..2656494	-	110	117618628	-	AHA_2410	-	hypothetical protein
2344	 65.48	0	2656667..2657512	-	281	117621472	-	AHA_2411	-	hypothetical protein
2345	 63.00	0	2657869..2658441	+	190	117619864	-	AHA_2412	-	adenylate cyclase
2346	 64.81	0	2658399..2658830	+	143	117620316	-	AHA_2413	-	nudix family protein, MutT subfamily
2347	 66.47	0	2659000..2659506	+	168	117619207	-	AHA_2414	-	acetyltransferase
2348	 63.73	0	2659567..2660892	+	441	117619733	gldA	AHA_2415	-	glycerol dehydrogenase
2349	 62.09	0	2661009..2661314	+	101	117618123	-	AHA_2416	-	antibiotic biosynthesis monooxygenase family protein
2350	 64.00	0	2661521..2662384	-	287	117618597	pdxY-2	AHA_2417	-	pyridoxal kinase
2351	 66.67	0	2662991..2663746	-	251	117617678	-	AHA_2418	-	hypothetical protein
2352	 60.99	0	2663825..2664388	-	187	117618111	-	AHA_2419	-	hypothetical protein
2353	 62.68	0	2664707..2665057	+	116	117620445	-	AHA_2420	-	PHA granule-associated protein
2354	 64.37	0	2665151..2666935	+	594	117617651	-	AHA_2421	-	poly-beta-hydroxybutyrate polymerase
2355	 66.17	0	2666932..2667336	+	134	117618527	-	AHA_2422	-	enoyl-CoA hydratase
2356	 58.97	0	2667526..2667759	+	77	117618132	-	AHA_2423	-	hypothetical protein
2357	 61.27	0	2668020..2668556	-	178	117620461	-	AHA_2424	-	hypothetical protein
2358	 64.95	0	2668644..2670395	-	583	117619962	-	AHA_2425	-	drug efflux ABC transporter ATP-binding and permease subunits
2359	 58.12	0	2670392..2670508	-	38	117620995	-	AHA_2426	-	hypothetical protein
2360	 63.90	0	2670505..2672241	-	578	117620443	-	AHA_2427	-	ABC transporter, ATP-binding protein
2361	 61.28	0	2672383..2675184	-	933	117617779	-	AHA_2428	-	sensory box histidine kinase/response regulator
62.23	MEAN

5.38	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.