IslandPathversion 1.0

IslandPath Analysis: Aeromonas hydrophila subsp. hydrophila ATCC 7966



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 62.23 STD DEV: 5.38
Aeromonas hydrophila subsp. hydrophila ATCC 7966, complete genome - 1..4744448
4122 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2035	 41.64	-2	2297699..2298637	-	312	117620086	-	AHA_2087	-	transcriptional regulator, LysR family protein
2036	 43.50	-2	2299168..2299698	+	176	117621503	-	AHA_2088	-	EAL domain-containing protein
2037	 49.16	-2	2299629..2301302	+	557	117619865	-	AHA_2089	-	cyclic diguanylate phosphodiesterase domain-containing protein
2038	 65.30	0	2301307..2302182	-	291	117618196	-	AHA_2090	-	transcriptional regulator
2039	 63.04	0	2302339..2303772	+	477	117618268	-	AHA_2091	-	beta-glucosidase
2040	 59.16	0	2303883..2305706	-	607	117620444	-	AHA_2092	-	GGDEF family protein
2041	 57.41	0	2305808..2306293	-	161	117618518	-	AHA_2093	-	oxidoreductase molybdopterin binding subunit
2042	 62.95	0	2306540..2307886	+	448	117620930	-	AHA_2094	-	HD domain-containing protein
2043	 65.34	0	2307932..2308687	-	251	117620998	-	AHA_2095	-	reductase
2044	 67.92	+1	2308814..2309767	+	317	117621467	-	AHA_2096	-	LysR family transcriptional regulator
2045	 62.41	0	2309932..2310777	+	281	117619212	-	AHA_2097	-	endonuclease IV
2046	 69.19	+1	2310811..2311800	+	329	117620297	-	AHA_2098	-	oxidoreductase, NAD-binding
2047	 65.68	0	2311915..2312823	-	302	117618740	-	AHA_2099	-	LysR family transcriptional regulator
2048	 63.82	0	2312923..2313906	+	327	117619213	-	AHA_2100	-	tellurite resistance protein
2049	 63.94	0	2314174..2315163	+	329	117617531	msbB	AHA_2101	-	lipid A biosynthesis (KDO)2-(lauroyl)-lipid IVA acyltransferase
2050	 62.86	0	2315332..2316330	+	332	117618022	-	AHA_2102	-	lipid A biosynthesis (KDO)2-(lauroyl)-lipid IVA acyltransferase
2051	 62.02	0	2316472..2317332	+	286	117619664	-	AHA_2103	-	RIO1 protein
2052	 69.35	+1	2317384..2317941	-	185	117620435	-	AHA_2104	-	acetyltransferase
2053	 67.32	0	2317917..2319290	-	457	117618694	-	AHA_2105	-	GGDEF domain-containing protein
2054	 62.67	0	2319364..2320089	-	241	117619172	-	AHA_2106	-	YbaK/prolyl-tRNA synthetase domain-containing protein
2055	 64.81	0	2320065..2322494	+	809	117621350	polB	AHA_2107	-	DNA polymerase II
2056	 65.29	0	2323361..2324740	-	459	117620009	-	AHA_2114	-	multidrug resistance protein MdtK
2057	 64.25	0	2324887..2325093	-	68	117621028	-	AHA_2115	-	hypothetical protein
2058	 64.89	0	2325224..2325841	+	205	117621475	ribE-1	AHA_2116	-	riboflavin synthase subunit alpha
2059	 60.29	0	2325931..2326134	-	67	117617565	-	AHA_2117	-	hypothetical protein
2060	 63.48	0	2326273..2326932	-	219	117617978	-	AHA_2118	-	2-deoxyglucose-6-phosphatase
2061	 66.58	0	2327059..2328237	-	392	117619791	purT	AHA_2119	-	phosphoribosylglycinamide formyltransferase 2
2062	 64.67	0	2328323..2329273	-	316	117620170	-	AHA_2120	-	drug/metabolite exporter family protein
2063	 59.77	0	2329331..2330026	+	231	117618128	-	AHA_2121	-	acyl carrier protein phosphodiesterase
2064	 66.67	0	2330123..2330299	-	58	117617533	-	AHA_2122	-	hypothetical protein
2065	 53.97	-1	2330466..2330654	-	62	117621548	-	AHA_2123	-	hypothetical protein
2066	 58.55	0	2330651..2331217	-	188	117620973	-	AHA_2124	-	MarR family transcriptional regulator
2067	 66.17	0	2331290..2332504	-	404	117619946	-	AHA_2125	-	hypothetical protein
2068	 65.45	0	2331344..2332579	+	411	117621433	-	AHA_2126	-	hypothetical protein
2069	 60.64	0	2332495..2333589	+	364	117618815	-	AHA_2127	-	nucleic acid binding protein
2070	 67.63	+1	2333590..2333901	+	103	117618618	-	AHA_2128	-	hypothetical protein
2071	 60.08	0	2333943..2334443	-	166	117620339	-	AHA_2129	-	dsDNA-mimic protein
2072	 64.97	0	2334565..2335272	-	235	117620004	mtgA	AHA_2130	-	monofunctional biosynthetic peptidoglycan transglycosylase
2073	 60.19	0	2335326..2335634	-	102	117617826	-	AHA_2131	-	dsDNA-mimic protein
2074	 51.69	-1	2335842..2336108	-	88	117618350	minE	AHA_2132	-	cell division topological specificity factor MinE
2075	 59.90	0	2336111..2336923	-	270	117618772	minD	AHA_2133	-	septum site-determining protein MinD
2076	 61.96	0	2336942..2337664	-	240	117617664	minC	AHA_2134	-	septum site-determining protein MinC
2077	 54.26	-1	2337772..2338053	+	93	117619720	-	AHA_2135	-	hypothetical protein
2078	 59.27	0	2338050..2339009	+	319	117620167	-	AHA_2136	-	membrane-bound lytic murein transglycosylase B
2079	 61.85	0	2339228..2340598	-	456	117620660	sdaA-1	AHA_2137	-	L-serine ammonia-lyase
2080	 64.71	0	2340876..2342258	-	460	117621113	sdaA-2	AHA_2138	-	L-serine ammonia-lyase
2081	 53.52	-1	2342462..2342788	-	108	117621369	-	AHA_2139	-	hypothetical protein
2082	 62.55	0	2343016..2344254	+	412	117618599	-	AHA_2140	-	proton/glutamate symporter
2083	 59.67	0	2344315..2344743	-	142	117619853	-	AHA_2141	-	MerR family transcriptional regulator
2084	 66.84	0	2344832..2345995	+	387	117621462	atoB	AHA_2143	-	acetyl-CoA acetyltransferase
2085	 60.38	0	2345992..2347215	-	407	117620787	-	AHA_2142	-	sensory box/GGDEF family protein
2086	 64.60	0	2347345..2348601	-	418	117618313	-	AHA_2144	-	long-chain fatty acid transport protein
2087	 60.12	0	2348855..2350153	-	432	117619468	-	AHA_2145	-	long-chain fatty acid transport protein
2088	 63.84	0	2350564..2351307	-	247	117618908	-	AHA_2146	-	hypothetical protein
2089	 59.05	0	2351300..2351890	-	196	117618563	-	AHA_2147	-	RNA polymerase sigma factor
2090	 69.82	+1	2351924..2353444	-	506	117620053	-	AHA_2148	-	hypothetical protein
2091	 70.20	+1	2353441..2354940	-	499	117620519	-	AHA_2149	-	TPR domain-containing protein
2092	 69.23	+1	2354940..2355953	-	337	117618496	-	AHA_2150	-	von Willebrand factor type A domain-containing protein
2093	 69.52	+1	2356516..2357460	-	314	117619096	-	AHA_2151	-	hypothetical protein
2094	 66.56	0	2357441..2358391	-	316	117619918	-	AHA_2152	-	MoxR protein
2095	 65.14	0	2358585..2359895	+	436	117620475	fadI	AHA_2153	-	3-ketoacyl-CoA thiolase
2096	 65.88	0	2359895..2362042	+	715	117620841	fadJ	AHA_2154	-	multifunctional fatty acid oxidation complex subunit alpha
2097	 56.03	-1	2362338..2362478	+	46	117617650	-	AHA_2155	-	hypothetical protein
2098	 60.83	0	2362578..2363228	+	216	117618105	-	AHA_2156	-	YaeQ
2099	 64.29	0	2363240..2364124	+	294	117618582	-	AHA_2157	-	auxin efflux carrier
2100	 38.23	-2	2365002..2365982	-	326	117618345	-	AHA_2158	-	hypothetical protein
2101	 61.63	0	2366991..2367407	+	138	117619036	-	AHA_2159	-	hypothetical protein
2102	 64.39	0	2367459..2369393	+	644	117617656	-	AHA_2160	-	sigma-54-dependent transcriptional regulator YgeV
2103	 59.26	0	2369822..2371009	+	395	117620823	-	AHA_2161	-	hypothetical protein
2104	 62.00	0	2371137..2372336	+	399	117619541	-	AHA_2162	-	diaminopropionate ammonia-lyase
2105	 61.82	0	2372460..2373677	+	405	162139472	-	AHA_2163	-	peptidase
2106	 64.35	0	2373796..2375220	+	474	117620710	hydA	AHA_2164	-	dihydropyrimidinase
2107	 64.52	0	2375316..2376248	+	310	117621250	arcC-1	AHA_2165	-	carbamate kinase
2108	 65.15	0	2376431..2377354	+	307	117617734	-	AHA_2166	-	inner membrane transport protein YijE
2109	 66.16	0	2377424..2379016	-	530	117618362	-	AHA_2167	-	xanthine dehydrogenase accessory factor
2110	 62.78	0	2379036..2379884	-	282	117618953	-	AHA_2168	-	hypothetical protein
2111	 64.07	0	2379865..2380518	+	217	117618517	-	AHA_2169	-	hypotehtical YgfJ
2112	 61.81	0	2380939..2384049	+	1036	117619188	-	AHA_2170	-	putative selenate reductase subunit YgfK
2113	 62.60	0	2384080..2385408	+	442	117618532	-	AHA_2171	-	putative chlorohydrolase/aminohydrolase
2114	 66.54	0	2385489..2386265	+	258	117620500	-	AHA_2172	-	putative selenate reductase subunit YgfM
2115	 64.46	0	2386262..2389159	+	965	117619598	-	AHA_2173	-	putative selenate reductase subunit YgfN
2116	 64.23	0	2389255..2390772	+	505	117619116	-	AHA_2174	-	xanthine/uracil permease family protein
2117	 61.96	0	2390797..2392113	+	438	117618707	-	AHA_2175	-	guanine deaminase
2118	 66.30	0	2392395..2393771	+	458	117618150	-	AHA_2176	-	xanthine/uracil permease family protein
2119	 64.38	0	2394101..2396419	+	772	117621444	-	AHA_2177	-	xanthine dehydrogenase subunit XdhA
2120	 67.24	0	2396412..2397290	+	292	117620820	-	AHA_2178	-	xanthine dehydrogenase subunit XdhB
2121	 63.58	0	2397287..2397772	+	161	117620497	-	AHA_2179	-	xanthine dehydrogenase subunit XdhC
2122	 65.70	0	2398305..2401523	+	1072	117619940	-	AHA_2180	-	nuclease
2123	 64.84	0	2401661..2402206	-	181	117620887	-	AHA_2181	-	hypothetical protein
2124	 60.85	0	2402710..2402898	+	62	117620460	-	AHA_2182	-	hypothetical protein
2125	 62.02	0	2402958..2404484	-	508	117619987	-	AHA_2183	-	putative transporter
2126	 63.65	0	2405120..2406742	+	540	117621371	-	AHA_2184	-	AMP-binding protein
2127	 40.43	-2	2406798..2408375	+	525	117620871	-	AHA_2185	-	KAP P-loop domain-containing protein
2128	 62.26	0	2408415..2409050	-	211	117617617	-	AHA_2186	-	bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP pyrophosphatase protein
2129	 62.40	0	2409043..2409816	-	257	117619306	hisF	AHA_2187	-	imidazole glycerol phosphate synthase subunit HisF
2130	 64.73	0	2409997..2413968	-	1323	117618541	-	AHA_2188	-	PAS
2131	 62.40	0	2413965..2416118	-	717	117620133	-	AHA_2189	-	PAS
2132	 62.88	0	2416111..2417220	-	369	117621097	-	AHA_2190	-	response regulator receiver
2133	 63.71	0	2417386..2418129	-	247	117618364	hisA	AHA_2191	-	1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase
2134	 62.62	0	2418135..2418776	-	213	117617576	hisH	AHA_2192	-	imidazole glycerol phosphate synthase, glutamine amidotransferase subunit
62.23	MEAN

5.38	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.