IslandPathversion 1.0

IslandPath Analysis: Aeromonas hydrophila subsp. hydrophila ATCC 7966



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 62.23 STD DEV: 5.38
Aeromonas hydrophila subsp. hydrophila ATCC 7966, complete genome - 1..4744448
4122 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1965	 59.70	0	2221894..2223486	-	530	117617511	-	AHA_2016	-	ABC transporter ATP-binding protein
1966	 59.12	0	2224945..2225355	-	136	117618851	-	AHA_2018	-	hypothetical protein
1967	 54.48	-1	2225454..2225855	-	133	117619292	-	AHA_2019	-	hypothetical protein
1968	 55.17	-1	2226502..2227989	-	495	117617913	-	AHA_2020	-	hypothetical protein
1969	 60.94	0	2228171..2228362	-	63	117619931	-	AHA_2021	-	hypothetical protein
1970	 57.54	0	2229144..2229428	-	94	117620489	-	AHA_2022	-	DNA-binding protein
1971	 48.09	-2	2229994..2231145	-	383	117619042	-	AHA_2023	-	hypothetical protein
1972	 62.22	0	2232078..2232257	-	59	117619607	-	AHA_2024	-	hypothetical protein
1973	 55.45	-1	2232485..2233090	-	201	117618127	-	AHA_2025	-	putative DNA-binding protein
1974	 60.77	0	2233478..2233867	+	129	117618658	-	AHA_2026	-	hypothetical protein
1975	 58.94	0	2234529..2235266	+	245	117619684	-	AHA_2027	-	hypothetical protein
1976	 63.35	0	2235244..2235726	+	160	117620243	-	AHA_2028	-	hypothetical protein
1977	 34.62	-2	2236299..2236766	-	155	117621304	-	AHA_2029	-	hypothetical protein
1978	 35.74	-2	2237161..2237826	-	221	117620720	-	AHA_2030	-	hypothetical protein
1979	 48.74	-2	2237965..2238360	-	131	117621515	-	AHA_2031	-	hypothetical protein
1980	 51.40	-2	2238820..2239605	+	261	117621534	-	AHA_2032	-	hypothetical protein
1981	 49.71	-2	2239584..2240438	+	284	117619779	-	AHA_2033	-	hypothetical protein
1982	 57.78	0	2241671..2241805	-	44	117621072	-	AHA_2034	-	hypothetical protein
1983	 34.87	-2	2242283..2243191	+	302	117618233	-	AHA_2035	-	putative RNA-dependent DNA polymerase
1984	 36.98	-2	2243181..2244851	+	556	117620939	-	AHA_2036	-	RecF/RecN/SMC family protein
1985	 36.62	-2	2244835..2245503	+	222	117620347	-	AHA_2037	-	hypothetical protein
1986	 50.75	-2	2245549..2246283	+	244	117619787	-	AHA_2038	-	Rha family phage regulatory protein
1987	 59.64	0	2246290..2246730	+	146	117619158	-	AHA_2039	-	NinB protein
1988	 65.09	0	2246727..2247044	+	105	117618084	-	AHA_2040	-	hypothetical protein
1989	 66.19	0	2247041..2247463	+	140	117617644	-	AHA_2041	-	hypothetical protein
1990	 60.83	0	2247460..2248161	+	233	117617719	-	AHA_2042	-	hypothetical protein
1991	 45.91	-2	2248208..2248891	-	227	117618283	-	AHA_2043	-	hypothetical protein
1992	 59.92	0	2248997..2250271	-	424	117619027	umuC	AHA_2044	-	protein UmuC
1993	 56.97	0	2250275..2250697	-	140	117618444	umuD	AHA_2045	-	umuD protein
1994	 46.67	-2	2250885..2251949	+	354	117621292	-	AHA_2046	-	hypothetical protein
1995	 52.07	-1	2252032..2252442	+	136	117619452	-	AHA_2047	-	DNA-binding protein Hns
1996	 41.98	-2	2252526..2252999	+	157	117617659	-	AHA_2048	-	hypothetical protein
1997	 47.71	-2	2253020..2253631	+	203	117620106	-	AHA_2049	-	hypothetical protein
1998	 61.99	0	2253952..2254443	+	163	117618756	-	AHA_2050	-	phage lysozyme
1999	 62.35	0	2254269..2254940	+	223	117619502	-	AHA_2052	-	hypothetical protein
2000	 62.96	0	2254488..2254838	-	116	117620197	-	AHA_2051	-	hypothetical protein
2001	 56.63	-1	2255023..2255919	+	298	117619882	-	AHA_2053	-	putative small subunit bacteriophage terminase
2002	 37.22	-2	2255959..2256705	+	248	117620963	-	AHA_2054	-	hypothetical protein
2003	 53.43	-1	2256773..2257837	+	354	117620548	-	AHA_2055	-	large subunit terminase
2004	 63.41	0	2260336..2261991	-	551	117620226	actP	AHA_2056	-	acetate permease
2005	 59.29	0	2261988..2262299	-	103	117617698	-	AHA_2057	-	hypothetical protein
2006	 66.99	0	2262409..2263035	-	208	117621105	-	AHA_2058	-	DNA polymerase III subunit epsilon
2007	 66.50	0	2263038..2264825	-	595	117617785	-	AHA_2059	-	cyclic nucleotide binding protein/CBS domain-containing proteins
2008	 65.18	0	2265002..2265808	+	268	117621463	-	AHA_2060	-	enoyl-CoA hydratase/isomerase family protein
2009	 59.52	0	2266221..2266472	+	83	117618489	-	AHA_2061	-	phage transcriptional activator, Ogr/Delta, putative
2010	 41.62	-2	2266720..2267709	-	329	117621238	-	AHA_2062	-	hypothetical protein
2011	 42.86	-2	2267696..2270161	-	821	117617841	-	AHA_2063	-	hypothetical protein
2012	 40.76	-2	2270253..2270723	-	156	117618940	-	AHA_2064	-	hypothetical protein
2013	 59.52	0	2270973..2271560	-	195	117619524	-	AHA_2065	-	hypothetical protein
2014	 66.93	0	2271560..2271940	-	126	117619634	-	AHA_2066	-	A protein
2015	 62.27	0	2272025..2273524	-	499	117621085	-	AHA_2067	-	sodium:alanine symporter family protein
2016	 62.69	0	2273674..2274276	+	200	117619224	-	AHA_2068	-	protein PhnO
2017	 65.56	0	2274295..2275104	+	269	117618776	-	AHA_2069	-	hypothetical protein
2018	 60.30	0	2275187..2275783	-	198	117618293	-	AHA_2070	-	GPR1/FUN34/yaaH family membrane protein
2019	 65.49	0	2276469..2279369	-	966	117617962	-	AHA_2071	-	hypothetical protein
2020	 62.20	0	2279418..2280179	-	253	117620922	-	AHA_2072	-	periplasmic binding protein
2021	 61.23	0	2280217..2280639	-	140	117618425	-	AHA_2073	-	MerR family transcriptional regulator
2022	 70.53	+1	2280651..2281607	-	318	117620658	-	AHA_2074	-	hydroxymethylglutaryl-CoA lyase
2023	 68.80	+1	2281604..2283568	-	654	117621084	-	AHA_2075	-	methylcrotonoyl-CoA carboxylase alpha chain
2024	 68.57	+1	2283678..2284517	-	279	117619428	-	AHA_2076	-	enoyl-CoA hydratase/isomerase family protein
2025	 66.60	0	2284527..2286128	-	533	117617791	-	AHA_2077	-	methylcrotonoyl-CoA carboxylase beta chain
2026	 65.19	0	2286125..2287273	-	382	117619749	-	AHA_2078	-	isovaleryl-CoA dehydrogenase 2
2027	 66.67	0	2287520..2289031	+	503	117620150	mmsA-2	AHA_2079	-	methylmalonate-semialdehyde dehydrogenase
2028	 66.18	0	2289031..2290254	+	407	117620593	-	AHA_2080	-	acyl-CoA dehydrogenase
2029	 67.04	0	2290395..2291207	+	270	117621061	-	AHA_2081	-	enoyl-CoA hydratase
2030	 67.84	+1	2291267..2292370	+	367	117617537	-	AHA_2082	-	enoyl-CoA hydratase/isomerase family protein
2031	 67.54	0	2292398..2293318	+	306	117618133	mmsB	AHA_2083	-	3-hydroxyisobutyrate dehydrogenase
2032	 67.19	0	2293390..2294151	+	253	117618981	fabG	AHA_2084	-	3-ketoacyl-(acyl-carrier-protein) reductase
2033	 63.54	0	2294541..2295977	+	478	117619431	-	AHA_2085	-	arginine/ornithine antiporter
2034	 65.78	0	2296068..2296856	+	262	117619625	-	AHA_2086	-	hypothetical protein
2035	 41.64	-2	2297699..2298637	-	312	117620086	-	AHA_2087	-	transcriptional regulator, LysR family protein
2036	 43.50	-2	2299168..2299698	+	176	117621503	-	AHA_2088	-	EAL domain-containing protein
2037	 49.16	-2	2299629..2301302	+	557	117619865	-	AHA_2089	-	cyclic diguanylate phosphodiesterase domain-containing protein
2038	 65.30	0	2301307..2302182	-	291	117618196	-	AHA_2090	-	transcriptional regulator
2039	 63.04	0	2302339..2303772	+	477	117618268	-	AHA_2091	-	beta-glucosidase
2040	 59.16	0	2303883..2305706	-	607	117620444	-	AHA_2092	-	GGDEF family protein
2041	 57.41	0	2305808..2306293	-	161	117618518	-	AHA_2093	-	oxidoreductase molybdopterin binding subunit
2042	 62.95	0	2306540..2307886	+	448	117620930	-	AHA_2094	-	HD domain-containing protein
2043	 65.34	0	2307932..2308687	-	251	117620998	-	AHA_2095	-	reductase
2044	 67.92	+1	2308814..2309767	+	317	117621467	-	AHA_2096	-	LysR family transcriptional regulator
2045	 62.41	0	2309932..2310777	+	281	117619212	-	AHA_2097	-	endonuclease IV
2046	 69.19	+1	2310811..2311800	+	329	117620297	-	AHA_2098	-	oxidoreductase, NAD-binding
2047	 65.68	0	2311915..2312823	-	302	117618740	-	AHA_2099	-	LysR family transcriptional regulator
2048	 63.82	0	2312923..2313906	+	327	117619213	-	AHA_2100	-	tellurite resistance protein
2049	 63.94	0	2314174..2315163	+	329	117617531	msbB	AHA_2101	-	lipid A biosynthesis (KDO)2-(lauroyl)-lipid IVA acyltransferase
2050	 62.86	0	2315332..2316330	+	332	117618022	-	AHA_2102	-	lipid A biosynthesis (KDO)2-(lauroyl)-lipid IVA acyltransferase
2051	 62.02	0	2316472..2317332	+	286	117619664	-	AHA_2103	-	RIO1 protein
2052	 69.35	+1	2317384..2317941	-	185	117620435	-	AHA_2104	-	acetyltransferase
2053	 67.32	0	2317917..2319290	-	457	117618694	-	AHA_2105	-	GGDEF domain-containing protein
2054	 62.67	0	2319364..2320089	-	241	117619172	-	AHA_2106	-	YbaK/prolyl-tRNA synthetase domain-containing protein
2055	 64.81	0	2320065..2322494	+	809	117621350	polB	AHA_2107	-	DNA polymerase II
2056	 65.29	0	2323361..2324740	-	459	117620009	-	AHA_2114	-	multidrug resistance protein MdtK
2057	 64.25	0	2324887..2325093	-	68	117621028	-	AHA_2115	-	hypothetical protein
2058	 64.89	0	2325224..2325841	+	205	117621475	ribE-1	AHA_2116	-	riboflavin synthase subunit alpha
2059	 60.29	0	2325931..2326134	-	67	117617565	-	AHA_2117	-	hypothetical protein
2060	 63.48	0	2326273..2326932	-	219	117617978	-	AHA_2118	-	2-deoxyglucose-6-phosphatase
2061	 66.58	0	2327059..2328237	-	392	117619791	purT	AHA_2119	-	phosphoribosylglycinamide formyltransferase 2
2062	 64.67	0	2328323..2329273	-	316	117620170	-	AHA_2120	-	drug/metabolite exporter family protein
2063	 59.77	0	2329331..2330026	+	231	117618128	-	AHA_2121	-	acyl carrier protein phosphodiesterase
2064	 66.67	0	2330123..2330299	-	58	117617533	-	AHA_2122	-	hypothetical protein
62.23	MEAN

5.38	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.