IslandPath Analysis: Aeromonas hydrophila subsp. hydrophila ATCC 7966



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 62.23   STD DEV: 5.38
Aeromonas hydrophila subsp. hydrophila ATCC 7966, complete genome - 1..4744448
4122 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1935	 66.93	0	2181684..2182439	-	251	117619942	-	AHA_1986	-	MotA/TolQ/ExbB proton channel family protein
1936	 64.05	0	2182442..2183245	-	267	117617798	tonB-1	AHA_1987	-	outer membrane receptor-mediated transport energizer protein TonB
1937	 63.06	0	2183497..2185383	-	628	117618276	-	AHA_1988	-	potassium transporter
1938	 62.23	0	2185831..2187294	+	487	117618999	guaB	AHA_1989	-	inosine-5'-monophosphate dehydrogenase
1939	 61.26	0	2187378..2188967	+	529	117618614	guaA	AHA_1990	-	bifunctional GMP synthase/glutamine amidotransferase protein
1940	 57.92	0	2189196..2189618	+	140	117619536	-	AHA_1991	-	hypothetical protein
1941	 35.06	-2	2190341..2191150	+	269	117620281	-	AHA_1992	-	hypothetical protein
1942	 64.49	0	2191492..2192319	-	275	117620235	-	AHA_1993	-	ada regulatory protein
1943	 64.36	0	2192371..2193282	-	303	117620667	-	AHA_1994	-	short chain dehydrogenase
1944	 65.36	0	2193264..2194799	+	511	117621383	-	AHA_1995	-	leucine-rich repeat-containing protein kinase
1945	 63.30	0	2195015..2195668	+	217	117617847	tpm	AHA_1996	-	thiopurine S-methyltransferase
1946	 63.32	0	2195977..2198751	-	924	117618446	-	AHA_1997	-	peptidase insulinase family protein
1947	 58.55	0	2198914..2199381	+	155	117619211	sixA	AHA_1998	-	phosphohistidine phosphatase SixA
1948	 56.02	-1	2199506..2199721	+	71	117618722	-	AHA_1999	-	hypothetical protein
1949	 66.01	0	2199922..2200839	+	305	117619004	-	AHA_2000	-	drug/metabolite exporter family transporter
1950	 60.79	0	2200889..2202505	-	538	117620326	-	AHA_2001	-	periplasmic murein peptide-binding protein
1951	 60.87	0	2202890..2203924	+	344	117621134	fbp	AHA_2002	-	fructose-1,6-bisphosphatase
1952	 65.83	0	2204164..2207628	-	1154	117621017	mfd	AHA_2003	-	transcription-repair coupling factor
1953	 59.20	0	2207638..2208213	-	191	117618166	-	AHA_2004	-	hypothetical protein
1954	 65.29	0	2208290..2209525	+	411	117617461	lolC	AHA_2005	-	lipoprotein-releasing system transmembrane protein LolC
1955	 64.24	0	2209518..2210300	+	260	117618723	lolD	AHA_2006	-	lipoprotein releasing system, ATP-binding protein
1956	 65.06	0	2210300..2211541	+	413	117620209	lolE	AHA_2007	-	lipoprotein releasing system, transmembrane protein LolE
1957	 62.44	0	2211626..2212216	-	196	117617923	-	AHA_2008	-	5'-nucleotidase YfbR
1958	 60.00	0	2212290..2212724	-	144	117618523	-	AHA_2009	-	hypothetical protein
1959	 57.13	0	2213153..2214463	+	436	117618825	tig	AHA_2010	-	trigger factor
1960	 59.04	0	2214571..2215173	+	200	117620419	clpP	AHA_2011	-	ATP-dependent Clp protease, proteolytic subunit ClpP
1961	 59.69	0	2215320..2216594	+	424	117620337	clpX	AHA_2012	-	ATP-dependent protease ATP-binding subunit
1962	 59.36	0	2216736..2219090	+	784	117621379	lon	AHA_2013	-	ATP-dependent protease La
1963	 55.68	-1	2219331..2219603	+	90	117620625	-	AHA_2014	-	DNA-binding protein HU-beta
1964	 60.13	0	2219758..2221668	+	636	117618139	ppiD	AHA_2015	-	peptidylprolyl cis-trans isomerase D
1965	 59.70	0	2221894..2223486	-	530	117617511	-	AHA_2016	-	ABC transporter ATP-binding protein
1966	 59.12	0	2224945..2225355	-	136	117618851	-	AHA_2018	-	hypothetical protein
1967	 54.48	-1	2225454..2225855	-	133	117619292	-	AHA_2019	-	hypothetical protein
1968	 55.17	-1	2226502..2227989	-	495	117617913	-	AHA_2020	-	hypothetical protein
1969	 60.94	0	2228171..2228362	-	63	117619931	-	AHA_2021	-	hypothetical protein
1970	 57.54	0	2229144..2229428	-	94	117620489	-	AHA_2022	-	DNA-binding protein
1971	 48.09	-2	2229994..2231145	-	383	117619042	-	AHA_2023	-	hypothetical protein
1972	 62.22	0	2232078..2232257	-	59	117619607	-	AHA_2024	-	hypothetical protein
1973	 55.45	-1	2232485..2233090	-	201	117618127	-	AHA_2025	-	putative DNA-binding protein
1974	 60.77	0	2233478..2233867	+	129	117618658	-	AHA_2026	-	hypothetical protein
1975	 58.94	0	2234529..2235266	+	245	117619684	-	AHA_2027	-	hypothetical protein
1976	 63.35	0	2235244..2235726	+	160	117620243	-	AHA_2028	-	hypothetical protein
1977	 34.62	-2	2236299..2236766	-	155	117621304	-	AHA_2029	-	hypothetical protein
1978	 35.74	-2	2237161..2237826	-	221	117620720	-	AHA_2030	-	hypothetical protein
1979	 48.74	-2	2237965..2238360	-	131	117621515	-	AHA_2031	-	hypothetical protein
1980	 51.40	-2	2238820..2239605	+	261	117621534	-	AHA_2032	-	hypothetical protein
1981	 49.71	-2	2239584..2240438	+	284	117619779	-	AHA_2033	-	hypothetical protein
1982	 57.78	0	2241671..2241805	-	44	117621072	-	AHA_2034	-	hypothetical protein
1983	 34.87	-2	2242283..2243191	+	302	117618233	-	AHA_2035	-	putative RNA-dependent DNA polymerase
1984	 36.98	-2	2243181..2244851	+	556	117620939	-	AHA_2036	-	RecF/RecN/SMC family protein
1985	 36.62	-2	2244835..2245503	+	222	117620347	-	AHA_2037	-	hypothetical protein
1986	 50.75	-2	2245549..2246283	+	244	117619787	-	AHA_2038	-	Rha family phage regulatory protein
1987	 59.64	0	2246290..2246730	+	146	117619158	-	AHA_2039	-	NinB protein
1988	 65.09	0	2246727..2247044	+	105	117618084	-	AHA_2040	-	hypothetical protein
1989	 66.19	0	2247041..2247463	+	140	117617644	-	AHA_2041	-	hypothetical protein
1990	 60.83	0	2247460..2248161	+	233	117617719	-	AHA_2042	-	hypothetical protein
1991	 45.91	-2	2248208..2248891	-	227	117618283	-	AHA_2043	-	hypothetical protein
1992	 59.92	0	2248997..2250271	-	424	117619027	umuC	AHA_2044	-	protein UmuC
1993	 56.97	0	2250275..2250697	-	140	117618444	umuD	AHA_2045	-	umuD protein
1994	 46.67	-2	2250885..2251949	+	354	117621292	-	AHA_2046	-	hypothetical protein
1995	 52.07	-1	2252032..2252442	+	136	117619452	-	AHA_2047	-	DNA-binding protein Hns
1996	 41.98	-2	2252526..2252999	+	157	117617659	-	AHA_2048	-	hypothetical protein
1997	 47.71	-2	2253020..2253631	+	203	117620106	-	AHA_2049	-	hypothetical protein
1998	 61.99	0	2253952..2254443	+	163	117618756	-	AHA_2050	-	phage lysozyme
1999	 62.35	0	2254269..2254940	+	223	117619502	-	AHA_2052	-	hypothetical protein
2000	 62.96	0	2254488..2254838	-	116	117620197	-	AHA_2051	-	hypothetical protein
2001	 56.63	-1	2255023..2255919	+	298	117619882	-	AHA_2053	-	putative small subunit bacteriophage terminase
2002	 37.22	-2	2255959..2256705	+	248	117620963	-	AHA_2054	-	hypothetical protein
2003	 53.43	-1	2256773..2257837	+	354	117620548	-	AHA_2055	-	large subunit terminase
2004	 63.41	0	2260336..2261991	-	551	117620226	actP	AHA_2056	-	acetate permease
2005	 59.29	0	2261988..2262299	-	103	117617698	-	AHA_2057	-	hypothetical protein
2006	 66.99	0	2262409..2263035	-	208	117621105	-	AHA_2058	-	DNA polymerase III subunit epsilon
2007	 66.50	0	2263038..2264825	-	595	117617785	-	AHA_2059	-	cyclic nucleotide binding protein/CBS domain-containing proteins
2008	 65.18	0	2265002..2265808	+	268	117621463	-	AHA_2060	-	enoyl-CoA hydratase/isomerase family protein
2009	 59.52	0	2266221..2266472	+	83	117618489	-	AHA_2061	-	phage transcriptional activator, Ogr/Delta, putative
2010	 41.62	-2	2266720..2267709	-	329	117621238	-	AHA_2062	-	hypothetical protein
2011	 42.86	-2	2267696..2270161	-	821	117617841	-	AHA_2063	-	hypothetical protein
2012	 40.76	-2	2270253..2270723	-	156	117618940	-	AHA_2064	-	hypothetical protein
2013	 59.52	0	2270973..2271560	-	195	117619524	-	AHA_2065	-	hypothetical protein
2014	 66.93	0	2271560..2271940	-	126	117619634	-	AHA_2066	-	A protein
2015	 62.27	0	2272025..2273524	-	499	117621085	-	AHA_2067	-	sodium:alanine symporter family protein
2016	 62.69	0	2273674..2274276	+	200	117619224	-	AHA_2068	-	protein PhnO
2017	 65.56	0	2274295..2275104	+	269	117618776	-	AHA_2069	-	hypothetical protein
2018	 60.30	0	2275187..2275783	-	198	117618293	-	AHA_2070	-	GPR1/FUN34/yaaH family membrane protein
2019	 65.49	0	2276469..2279369	-	966	117617962	-	AHA_2071	-	hypothetical protein
2020	 62.20	0	2279418..2280179	-	253	117620922	-	AHA_2072	-	periplasmic binding protein
2021	 61.23	0	2280217..2280639	-	140	117618425	-	AHA_2073	-	MerR family transcriptional regulator
2022	 70.53	+1	2280651..2281607	-	318	117620658	-	AHA_2074	-	hydroxymethylglutaryl-CoA lyase
2023	 68.80	+1	2281604..2283568	-	654	117621084	-	AHA_2075	-	methylcrotonoyl-CoA carboxylase alpha chain
2024	 68.57	+1	2283678..2284517	-	279	117619428	-	AHA_2076	-	enoyl-CoA hydratase/isomerase family protein
2025	 66.60	0	2284527..2286128	-	533	117617791	-	AHA_2077	-	methylcrotonoyl-CoA carboxylase beta chain
2026	 65.19	0	2286125..2287273	-	382	117619749	-	AHA_2078	-	isovaleryl-CoA dehydrogenase 2
2027	 66.67	0	2287520..2289031	+	503	117620150	mmsA-2	AHA_2079	-	methylmalonate-semialdehyde dehydrogenase
2028	 66.18	0	2289031..2290254	+	407	117620593	-	AHA_2080	-	acyl-CoA dehydrogenase
2029	 67.04	0	2290395..2291207	+	270	117621061	-	AHA_2081	-	enoyl-CoA hydratase
2030	 67.84	+1	2291267..2292370	+	367	117617537	-	AHA_2082	-	enoyl-CoA hydratase/isomerase family protein
2031	 67.54	0	2292398..2293318	+	306	117618133	mmsB	AHA_2083	-	3-hydroxyisobutyrate dehydrogenase
2032	 67.19	0	2293390..2294151	+	253	117618981	fabG	AHA_2084	-	3-ketoacyl-(acyl-carrier-protein) reductase
2033	 63.54	0	2294541..2295977	+	478	117619431	-	AHA_2085	-	arginine/ornithine antiporter
2034	 65.78	0	2296068..2296856	+	262	117619625	-	AHA_2086	-	hypothetical protein
62.23	MEAN

5.38	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was pro