IslandPathversion 1.0

IslandPath Analysis: Aeromonas hydrophila subsp. hydrophila ATCC 7966



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 62.23 STD DEV: 5.38
Aeromonas hydrophila subsp. hydrophila ATCC 7966, complete genome - 1..4744448
4122 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1931	 68.04	+1	2177274..2178653	+	459	117617608	-	AHA_1982	-	coproporphyrinogen III oxidase
1932	 67.91	+1	2178725..2180089	-	454	117620910	xseA	AHA_1983	-	exodeoxyribonuclease VII, large subunit
1933	 67.20	0	2180197..2181126	-	309	117621377	-	AHA_1984	-	putative transporter
1934	 62.14	0	2181265..2181684	-	139	117621446	-	AHA_1985	-	biopolymer transport exbD1 protein
1935	 66.93	0	2181684..2182439	-	251	117619942	-	AHA_1986	-	MotA/TolQ/ExbB proton channel family protein
1936	 64.05	0	2182442..2183245	-	267	117617798	tonB-1	AHA_1987	-	outer membrane receptor-mediated transport energizer protein TonB
1937	 63.06	0	2183497..2185383	-	628	117618276	-	AHA_1988	-	potassium transporter
1938	 62.23	0	2185831..2187294	+	487	117618999	guaB	AHA_1989	-	inosine-5'-monophosphate dehydrogenase
1939	 61.26	0	2187378..2188967	+	529	117618614	guaA	AHA_1990	-	bifunctional GMP synthase/glutamine amidotransferase protein
1940	 57.92	0	2189196..2189618	+	140	117619536	-	AHA_1991	-	hypothetical protein
1941	 35.06	-2	2190341..2191150	+	269	117620281	-	AHA_1992	-	hypothetical protein
1942	 64.49	0	2191492..2192319	-	275	117620235	-	AHA_1993	-	ada regulatory protein
1943	 64.36	0	2192371..2193282	-	303	117620667	-	AHA_1994	-	short chain dehydrogenase
1944	 65.36	0	2193264..2194799	+	511	117621383	-	AHA_1995	-	leucine-rich repeat-containing protein kinase
1945	 63.30	0	2195015..2195668	+	217	117617847	tpm	AHA_1996	-	thiopurine S-methyltransferase
1946	 63.32	0	2195977..2198751	-	924	117618446	-	AHA_1997	-	peptidase insulinase family protein
1947	 58.55	0	2198914..2199381	+	155	117619211	sixA	AHA_1998	-	phosphohistidine phosphatase SixA
1948	 56.02	-1	2199506..2199721	+	71	117618722	-	AHA_1999	-	hypothetical protein
1949	 66.01	0	2199922..2200839	+	305	117619004	-	AHA_2000	-	drug/metabolite exporter family transporter
1950	 60.79	0	2200889..2202505	-	538	117620326	-	AHA_2001	-	periplasmic murein peptide-binding protein
1951	 60.87	0	2202890..2203924	+	344	117621134	fbp	AHA_2002	-	fructose-1,6-bisphosphatase
1952	 65.83	0	2204164..2207628	-	1154	117621017	mfd	AHA_2003	-	transcription-repair coupling factor
1953	 59.20	0	2207638..2208213	-	191	117618166	-	AHA_2004	-	hypothetical protein
1954	 65.29	0	2208290..2209525	+	411	117617461	lolC	AHA_2005	-	lipoprotein-releasing system transmembrane protein LolC
1955	 64.24	0	2209518..2210300	+	260	117618723	lolD	AHA_2006	-	lipoprotein releasing system, ATP-binding protein
1956	 65.06	0	2210300..2211541	+	413	117620209	lolE	AHA_2007	-	lipoprotein releasing system, transmembrane protein LolE
1957	 62.44	0	2211626..2212216	-	196	117617923	-	AHA_2008	-	5'-nucleotidase YfbR
1958	 60.00	0	2212290..2212724	-	144	117618523	-	AHA_2009	-	hypothetical protein
1959	 57.13	0	2213153..2214463	+	436	117618825	tig	AHA_2010	-	trigger factor
1960	 59.04	0	2214571..2215173	+	200	117620419	clpP	AHA_2011	-	ATP-dependent Clp protease, proteolytic subunit ClpP
1961	 59.69	0	2215320..2216594	+	424	117620337	clpX	AHA_2012	-	ATP-dependent protease ATP-binding subunit
1962	 59.36	0	2216736..2219090	+	784	117621379	lon	AHA_2013	-	ATP-dependent protease La
1963	 55.68	-1	2219331..2219603	+	90	117620625	-	AHA_2014	-	DNA-binding protein HU-beta
1964	 60.13	0	2219758..2221668	+	636	117618139	ppiD	AHA_2015	-	peptidylprolyl cis-trans isomerase D
1965	 59.70	0	2221894..2223486	-	530	117617511	-	AHA_2016	-	ABC transporter ATP-binding protein
1966	 59.12	0	2224945..2225355	-	136	117618851	-	AHA_2018	-	hypothetical protein
1967	 54.48	-1	2225454..2225855	-	133	117619292	-	AHA_2019	-	hypothetical protein
1968	 55.17	-1	2226502..2227989	-	495	117617913	-	AHA_2020	-	hypothetical protein
1969	 60.94	0	2228171..2228362	-	63	117619931	-	AHA_2021	-	hypothetical protein
1970	 57.54	0	2229144..2229428	-	94	117620489	-	AHA_2022	-	DNA-binding protein
1971	 48.09	-2	2229994..2231145	-	383	117619042	-	AHA_2023	-	hypothetical protein
1972	 62.22	0	2232078..2232257	-	59	117619607	-	AHA_2024	-	hypothetical protein
1973	 55.45	-1	2232485..2233090	-	201	117618127	-	AHA_2025	-	putative DNA-binding protein
1974	 60.77	0	2233478..2233867	+	129	117618658	-	AHA_2026	-	hypothetical protein
1975	 58.94	0	2234529..2235266	+	245	117619684	-	AHA_2027	-	hypothetical protein
1976	 63.35	0	2235244..2235726	+	160	117620243	-	AHA_2028	-	hypothetical protein
1977	 34.62	-2	2236299..2236766	-	155	117621304	-	AHA_2029	-	hypothetical protein
1978	 35.74	-2	2237161..2237826	-	221	117620720	-	AHA_2030	-	hypothetical protein
1979	 48.74	-2	2237965..2238360	-	131	117621515	-	AHA_2031	-	hypothetical protein
1980	 51.40	-2	2238820..2239605	+	261	117621534	-	AHA_2032	-	hypothetical protein
1981	 49.71	-2	2239584..2240438	+	284	117619779	-	AHA_2033	-	hypothetical protein
1982	 57.78	0	2241671..2241805	-	44	117621072	-	AHA_2034	-	hypothetical protein
1983	 34.87	-2	2242283..2243191	+	302	117618233	-	AHA_2035	-	putative RNA-dependent DNA polymerase
1984	 36.98	-2	2243181..2244851	+	556	117620939	-	AHA_2036	-	RecF/RecN/SMC family protein
1985	 36.62	-2	2244835..2245503	+	222	117620347	-	AHA_2037	-	hypothetical protein
1986	 50.75	-2	2245549..2246283	+	244	117619787	-	AHA_2038	-	Rha family phage regulatory protein
1987	 59.64	0	2246290..2246730	+	146	117619158	-	AHA_2039	-	NinB protein
1988	 65.09	0	2246727..2247044	+	105	117618084	-	AHA_2040	-	hypothetical protein
1989	 66.19	0	2247041..2247463	+	140	117617644	-	AHA_2041	-	hypothetical protein
1990	 60.83	0	2247460..2248161	+	233	117617719	-	AHA_2042	-	hypothetical protein
1991	 45.91	-2	2248208..2248891	-	227	117618283	-	AHA_2043	-	hypothetical protein
1992	 59.92	0	2248997..2250271	-	424	117619027	umuC	AHA_2044	-	protein UmuC
1993	 56.97	0	2250275..2250697	-	140	117618444	umuD	AHA_2045	-	umuD protein
1994	 46.67	-2	2250885..2251949	+	354	117621292	-	AHA_2046	-	hypothetical protein
1995	 52.07	-1	2252032..2252442	+	136	117619452	-	AHA_2047	-	DNA-binding protein Hns
1996	 41.98	-2	2252526..2252999	+	157	117617659	-	AHA_2048	-	hypothetical protein
1997	 47.71	-2	2253020..2253631	+	203	117620106	-	AHA_2049	-	hypothetical protein
1998	 61.99	0	2253952..2254443	+	163	117618756	-	AHA_2050	-	phage lysozyme
1999	 62.35	0	2254269..2254940	+	223	117619502	-	AHA_2052	-	hypothetical protein
2000	 62.96	0	2254488..2254838	-	116	117620197	-	AHA_2051	-	hypothetical protein
2001	 56.63	-1	2255023..2255919	+	298	117619882	-	AHA_2053	-	putative small subunit bacteriophage terminase
2002	 37.22	-2	2255959..2256705	+	248	117620963	-	AHA_2054	-	hypothetical protein
2003	 53.43	-1	2256773..2257837	+	354	117620548	-	AHA_2055	-	large subunit terminase
2004	 63.41	0	2260336..2261991	-	551	117620226	actP	AHA_2056	-	acetate permease
2005	 59.29	0	2261988..2262299	-	103	117617698	-	AHA_2057	-	hypothetical protein
2006	 66.99	0	2262409..2263035	-	208	117621105	-	AHA_2058	-	DNA polymerase III subunit epsilon
2007	 66.50	0	2263038..2264825	-	595	117617785	-	AHA_2059	-	cyclic nucleotide binding protein/CBS domain-containing proteins
2008	 65.18	0	2265002..2265808	+	268	117621463	-	AHA_2060	-	enoyl-CoA hydratase/isomerase family protein
2009	 59.52	0	2266221..2266472	+	83	117618489	-	AHA_2061	-	phage transcriptional activator, Ogr/Delta, putative
2010	 41.62	-2	2266720..2267709	-	329	117621238	-	AHA_2062	-	hypothetical protein
2011	 42.86	-2	2267696..2270161	-	821	117617841	-	AHA_2063	-	hypothetical protein
2012	 40.76	-2	2270253..2270723	-	156	117618940	-	AHA_2064	-	hypothetical protein
2013	 59.52	0	2270973..2271560	-	195	117619524	-	AHA_2065	-	hypothetical protein
2014	 66.93	0	2271560..2271940	-	126	117619634	-	AHA_2066	-	A protein
2015	 62.27	0	2272025..2273524	-	499	117621085	-	AHA_2067	-	sodium:alanine symporter family protein
2016	 62.69	0	2273674..2274276	+	200	117619224	-	AHA_2068	-	protein PhnO
2017	 65.56	0	2274295..2275104	+	269	117618776	-	AHA_2069	-	hypothetical protein
2018	 60.30	0	2275187..2275783	-	198	117618293	-	AHA_2070	-	GPR1/FUN34/yaaH family membrane protein
2019	 65.49	0	2276469..2279369	-	966	117617962	-	AHA_2071	-	hypothetical protein
2020	 62.20	0	2279418..2280179	-	253	117620922	-	AHA_2072	-	periplasmic binding protein
2021	 61.23	0	2280217..2280639	-	140	117618425	-	AHA_2073	-	MerR family transcriptional regulator
2022	 70.53	+1	2280651..2281607	-	318	117620658	-	AHA_2074	-	hydroxymethylglutaryl-CoA lyase
2023	 68.80	+1	2281604..2283568	-	654	117621084	-	AHA_2075	-	methylcrotonoyl-CoA carboxylase alpha chain
2024	 68.57	+1	2283678..2284517	-	279	117619428	-	AHA_2076	-	enoyl-CoA hydratase/isomerase family protein
2025	 66.60	0	2284527..2286128	-	533	117617791	-	AHA_2077	-	methylcrotonoyl-CoA carboxylase beta chain
2026	 65.19	0	2286125..2287273	-	382	117619749	-	AHA_2078	-	isovaleryl-CoA dehydrogenase 2
2027	 66.67	0	2287520..2289031	+	503	117620150	mmsA-2	AHA_2079	-	methylmalonate-semialdehyde dehydrogenase
2028	 66.18	0	2289031..2290254	+	407	117620593	-	AHA_2080	-	acyl-CoA dehydrogenase
2029	 67.04	0	2290395..2291207	+	270	117621061	-	AHA_2081	-	enoyl-CoA hydratase
2030	 67.84	+1	2291267..2292370	+	367	117617537	-	AHA_2082	-	enoyl-CoA hydratase/isomerase family protein
62.23	MEAN

5.38	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.