IslandPath Analysis: Aeromonas hydrophila subsp. hydrophila ATCC 7966



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 62.23   STD DEV: 5.38
Aeromonas hydrophila subsp. hydrophila ATCC 7966, complete genome - 1..4744448
4122 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1769	 64.69	0	1981516..1982223	+	235	117619436	exsB	AHA_1816	-	exsB protein
1770	 59.80	0	1982243..1982956	+	237	117620682	-	AHA_1817	-	radical activating enzyme
1771	 54.55	-1	1982958..1983188	+	76	117620321	-	AHA_1818	-	hypothetical protein
1772	 56.03	-1	1983185..1983748	+	187	117618490	-	AHA_1819	-	ATP:cob(I)alamin adenosyltransferase, putative
1773	 56.30	-1	1983815..1984219	-	134	117618168	-	AHA_1820	-	DNA-binding protein StpA
1774	 62.62	0	1984799..1986379	+	526	117620019	-	AHA_1821	-	Na(+)/H(+) antiporter family protein
1775	 58.08	0	1986466..1987047	+	193	117619087	tdk	AHA_1822	-	thymidine kinase
1776	 62.33	0	1987116..1988453	-	445	117620901	-	AHA_1823	-	hypothetical protein
1777	 56.71	-1	1988606..1989067	+	153	117621567	-	AHA_1824	-	hypothetical protein
1778	 58.00	0	1990515..1991033	+	172	117620640	-	AHA_1826	-	hemolysin co-regulated protein
1779	 61.56	0	1991311..1993542	+	743	117621074	-	AHA_1827	-	VgrG protein
1780	 54.09	-1	1993544..1994863	+	439	117619721	-	AHA_1828	-	hypothetical protein
1781	 48.69	-2	1994873..1995862	+	329	117620164	-	AHA_1829	-	hypothetical protein
1782	 45.79	-2	1995977..1996522	+	181	117619201	-	AHA_1830	-	hypothetical protein
1783	 57.16	0	1996643..1998031	+	462	117618069	-	AHA_1831	-	hypothetical protein
1784	 52.58	-1	1998704..1999207	+	167	117618948	-	AHA_1832	-	hypothetical protein
1785	 60.01	0	1999252..2000724	+	490	117621313	-	AHA_1833	-	hypothetical protein
1786	 58.56	0	2000731..2001162	+	143	117617929	-	AHA_1834	-	hypothetical protein
1787	 62.31	0	2001166..2002932	+	588	117619565	-	AHA_1835	-	hypothetical protein
1788	 62.66	0	2002896..2003894	+	332	117620147	-	AHA_1836	-	hypothetical protein
1789	 64.67	0	2003951..2005201	+	416	117619691	-	AHA_1837	-	hypothetical protein
1790	 60.85	0	2005201..2005716	+	171	117620252	-	AHA_1838	-	putative lipoprotein
1791	 65.99	0	2005719..2007053	+	444	117618870	-	AHA_1839	-	hypothetical protein
1792	 61.88	0	2007145..2007855	+	236	117619347	-	AHA_1840	-	hypothetical protein
1793	 65.42	0	2007876..2010518	+	880	117617832	-	AHA_1841	-	ClpA/ClpB family protein
1794	 65.89	0	2010521..2012059	+	512	117617496	-	AHA_1842	-	sigma-54 dependent transcriptional regulator
1795	 69.47	+1	2012059..2012664	+	201	117620275	-	AHA_1843	-	hypothetical protein
1796	 68.68	+1	2012673..2014109	+	478	117620760	-	AHA_1844	-	ImpA-related domain-containing protein
1797	 63.83	0	2014151..2017636	+	1161	117618798	-	AHA_1845	-	ImcF family protein
1798	 62.40	0	2017683..2019113	+	476	117619389	-	AHA_1846	-	ImpA domain-containing protein
1799	 64.93	0	2019371..2019658	+	95	117619593	-	AHA_1847	-	PAAR motif-containing protein
1800	 61.49	0	2019669..2021714	+	681	117620092	-	AHA_1848	-	Rhs element Vgr family protein
1801	 49.37	-2	2021749..2024304	+	851	117620566	-	AHA_1849	-	hypothetical protein
1802	 31.60	-2	2024307..2024711	+	134	117621024	-	AHA_1850	-	hypothetical protein
1803	 58.33	0	2027356..2028219	+	287	117620767	-	AHA_1854	-	FolD bifunctional protein
1804	 48.40	-2	2028327..2028545	-	72	117618294	cspD	AHA_1855	-	cold shock domain-containing protein CspD
1805	 49.69	-2	2028774..2029091	+	105	117619917	clpS	AHA_1856	-	ATP-dependent Clp protease adaptor protein ClpS
1806	 57.66	0	2029151..2031403	+	750	117621540	clpA	AHA_1857	-	ATP-dependent Clp protease, ATP-binding subunit ClpA
1807	 47.92	-2	2031473..2031712	-	79	117621081	infA	AHA_1858	-	translation initiation factor IF-1
1808	 57.46	0	2031761..2032477	-	238	117620630	-	AHA_1859	-	arginyl-tRNA-protein transferase
1809	 59.89	0	2032474..2033181	-	235	117618258	aat	AHA_1860	-	leucyl/phenylalanyl-tRNA--protein transferase
1810	 57.54	0	2033201..2033671	+	156	117618220	-	AHA_1861	-	putative surface antigen
1811	 61.30	0	2033782..2035029	-	415	117619488	-	AHA_1862	-	response regulator protein
1812	 61.51	0	2035087..2036268	-	393	117618917	trxB	AHA_1863	-	thioredoxin-disulfide reductase
1813	 53.86	-1	2036934..2037425	+	163	117620059	lrp	AHA_1864	-	leucine-responsive transcriptional regulator
1814	 63.89	0	2037627..2040149	+	840	117619696	-	AHA_1865	-	FtsK/SpoIIIE family protein
1815	 59.61	0	2040227..2040835	+	202	117620952	lolA	AHA_1866	-	outer membrane lipoprotein carrier protein LolA
1816	 64.90	0	2040959..2042314	+	451	117620641	-	AHA_1867	-	recombination factor protein RarA
1817	 62.73	0	2042654..2043949	+	431	117619333	serS	AHA_1868	-	seryl-tRNA synthetase
1818	 56.85	-1	2044136..2044624	+	162	117618867	cvpA	AHA_1869	-	CvpA family protein
1819	 61.34	0	2044646..2046166	+	506	117621358	purF	AHA_1870	-	amidophosphoribosyltransferase
1820	 63.24	0	2046352..2047110	+	252	117620905	-	AHA_1871	-	tRNA-(ms[2]io[6]A)-hydroxylase
1821	 64.50	0	2047265..2048050	-	261	117618135	sapF	AHA_1872	-	peptide ABC transporter, ATP-binding protein SapF
1822	 63.56	0	2048106..2049104	-	332	117617647	sapD	AHA_1873	-	peptide ABC transporter, ATP-binding protein SapD
1823	 64.21	0	2049104..2049997	-	297	117617866	sapC	AHA_1874	-	peptide ABC transporter, permease protein SapC
1824	 65.62	0	2050033..2050992	-	319	117618512	sapB	AHA_1875	-	peptide ABC transporter, permease protein SapB
1825	 64.43	0	2050995..2052560	-	521	117618799	sapA	AHA_1876	-	peptide ABC transporter, periplasmic peptide-binding protein SapA
1826	 64.93	0	2052681..2053715	-	344	117620434	-	AHA_1877	-	PSP operon transcriptional activator
1827	 63.44	0	2053911..2054591	+	226	117621025	-	AHA_1878	-	phage shock protein A
1828	 60.34	0	2054595..2054831	+	78	117621464	pspB	AHA_1879	-	phage shock protein B
1829	 62.11	0	2054860..2055342	+	160	117619644	-	AHA_1880	-	phage shock protein C
1830	 65.20	0	2055450..2056880	+	476	117620218	-	AHA_1881	-	amino acid regulated cytosolic protein
1831	 68.81	+1	2056947..2057972	+	341	117618546	-	AHA_1882	-	hypothetical protein
1832	 65.79	0	2058144..2058938	+	264	117619142	phhA	AHA_1883	-	phenylalanine 4-monooxygenase
1833	 60.77	0	2058993..2059331	+	112	117619419	-	AHA_1884	-	pterin-4-alpha-carbinolamine dehydratase
1834	 56.86	0	2059351..2059452	+	33	117617926	-	AHA_1885	-	pterin-4-alpha-carbinolamine dehydratase
1835	 64.28	0	2059587..2061134	+	515	117618278	tyrR	AHA_1886	-	transcriptional regulatory protein TyrR
1836	 65.96	0	2061312..2061881	+	189	117620664	-	AHA_1887	-	hypothetical protein
1837	 65.17	0	2061878..2063146	+	422	117620962	-	AHA_1888	-	inner membrane protein YfiN
1838	 62.17	0	2063149..2063637	+	162	117621166	-	AHA_1889	-	OmpA family protein
1839	 61.79	0	2063695..2064474	-	259	117619693	-	AHA_1890	-	TerC protein
1840	 67.83	+1	2064548..2065663	+	371	117620232	-	AHA_1891	-	ATP-NAD kinase
1841	 57.35	0	2065774..2066052	+	92	117619382	-	AHA_1892	-	hypothetical protein
1842	 63.36	0	2066150..2067814	+	554	117617870	-	AHA_1893	-	long-chain acyl-CoA synthetase
1843	 66.44	0	2067899..2068780	-	293	117618483	cdd	AHA_1894	-	cytidine deaminase
1844	 65.94	0	2068968..2069654	-	228	117620567	-	AHA_1895	-	LrgB family protein
1845	 62.46	0	2069651..2070007	-	118	117621147	-	AHA_1896	-	LrgA family protein
1846	 67.84	+1	2070167..2071876	+	569	117618141	-	AHA_1897	-	alpha-galactosidase
1847	 59.44	0	2071949..2072488	-	179	117617682	-	AHA_1898	-	hypothetical protein
1848	 61.77	0	2072610..2074304	-	564	117619062	-	AHA_1899	-	exodeoxyribonuclease I
1849	 64.13	0	2074271..2075770	-	499	117618604	araA	AHA_1900	-	L-arabinose isomerase
1850	 64.38	0	2075784..2076482	-	232	117619029	araD	AHA_1901	-	L-ribulose-5-phosphate 4-epimerase
1851	 68.32	+1	2076479..2078170	-	563	117618580	araB	AHA_1902	-	ribulokinase
1852	 61.69	0	2078532..2079515	+	327	117620455	-	AHA_1903	-	L-arabinose ABC transporter, periplasmic L-arabinose-binding protein
1853	 63.07	0	2079588..2081087	+	499	117620006	araG	AHA_1904	-	L-arabinose transporter ATP-binding protein
1854	 64.37	0	2081136..2082137	+	333	117617670	araH	AHA_1905	-	L-arabinose transporter permease protein
1855	 63.05	0	2082282..2083193	+	303	117620896	araC	AHA_1906	-	DNA-binding transcriptional regulator AraC
1856	 70.48	+1	2083288..2084022	-	244	117617626	-	AHA_1907	-	LysR family transcriptional regulator
1857	 65.45	0	2084029..2084193	-	54	117619021	-	AHA_1908	-	LysR family transcriptional regulator
1858	 64.82	0	2084317..2085183	+	288	117618116	-	AHA_1909	-	pirin, N-terminal:Pirin, C-terminal
1859	 60.32	0	2085234..2085359	-	41	117617629	rpmJ	AHA_1910	-	ribosomal protein L36
1860	 56.67	-1	2085356..2085625	-	89	117621340	rpmE-1	AHA_1911	-	ribosomal protein L31
1861	 61.85	0	2085882..2086130	+	82	117620802	-	AHA_1912	-	DNA-damage-inducible protein I
1862	 63.26	0	2086266..2087087	-	273	117619086	-	AHA_1913	-	hypothetical protein
1863	 59.72	0	2087112..2087615	-	167	117618493	-	AHA_1914	-	hypothetical protein
1864	 64.10	0	2087756..2089468	-	570	117618185	-	AHA_1915	-	hypothetical protein
1865	 68.47	+1	2089595..2091253	-	552	117617640	-	AHA_1916	-	5'-nucleotidase
1866	 64.82	0	2091384..2092736	-	450	117620822	dcuC	AHA_1917	-	C4-dicarboxylate transporter DcuC
1867	 63.86	0	2093102..2093671	+	189	117619930	-	AHA_1918	-	hypothetical protein
1868	 65.02	0	2093754..2095751	-	665	117620480	-	AHA_1919	-	tRNA (5-aminomethyl-2-thiouridylate) methyltransferase
62.23	MEAN

5.38	STD DEV




Last Updated: Dec 04, 2008
      
Funding