IslandPath Analysis: Aeromonas hydrophila subsp. hydrophila ATCC 7966



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 62.23   STD DEV: 5.38
Aeromonas hydrophila subsp. hydrophila ATCC 7966, complete genome - 1..4744448
4122 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1732	 65.50	0	1948261..1949628	-	455	117618370	nuoF	AHA_1778	-	NADH dehydrogenase I subunit F
1733	 62.98	0	1949625..1950167	-	180	117620389	-	AHA_1779	-	NADH dehydrogenase subunit E
1734	 61.79	0	1950229..1952034	-	601	117619929	-	AHA_1780	-	bifunctional NADH:ubiquinone oxidoreductase subunit C/D
1735	 61.63	0	1952037..1952711	-	224	117619274	-	AHA_1781	-	NADH dehydrogenase subunit B
1736	 56.05	-1	1952741..1953145	-	134	117621492	-	AHA_1782	-	NADH dehydrogenase subunit A
1737	 59.93	0	1953404..1954279	-	291	117619885	motB	AHA_1783	-	flagellar motor protein MotB
1738	 59.29	0	1954257..1955015	-	252	117618549	-	AHA_1784	-	chemotaxis MotA protein
1739	 62.46	0	1955701..1956318	-	205	117619000	-	AHA_1786	-	hypothetical protein
1740	 65.84	0	1956339..1957067	-	242	117617609	-	AHA_1787	-	hypothetical protein
1741	 62.10	0	1957064..1957654	-	196	117618060	-	AHA_1788	-	LemA protein
1742	 65.39	0	1957712..1958494	-	260	117620859	mepA	AHA_1789	-	penicillin-insensitive murein endopeptidase
1743	 63.35	0	1958652..1959194	+	180	117621360	-	AHA_1790	-	hypothetical protein
1744	 54.86	-1	1959405..1959692	+	95	117619969	-	AHA_1791	-	RNA-binding protein
1745	 63.33	0	1959764..1960663	-	299	117620396	-	AHA_1792	-	aldo/keto reductase family oxidoreductase
1746	 62.01	0	1960779..1961186	+	135	117619841	-	AHA_1793	-	bacteriophage CI repressor protein, putative
1747	 65.67	0	1961268..1961969	+	233	117620271	-	AHA_1794	-	CsgA
1748	 63.43	0	1962060..1963079	+	339	117617614	-	AHA_1795	-	L-allo-threonine aldolase
1749	 60.27	0	1963140..1963577	-	145	117617989	-	AHA_1796	-	GGDEF domain-containing protein
1750	 60.29	0	1963580..1964614	-	344	117621044	-	AHA_1797	-	response regulator
1751	 59.74	0	1964669..1965607	-	312	117621512	-	AHA_1798	-	LysR family transcriptional regulator
1752	 51.99	-1	1965681..1966382	-	233	117620431	-	AHA_1799	-	hypothetical protein
1753	 62.84	0	1966555..1968486	+	643	117620876	-	AHA_1800	-	PAS/GGDEF domain-containing protein
1754	 63.77	0	1968575..1969300	+	241	117618696	-	AHA_1801	-	nitroreductase A
1755	 58.17	0	1969489..1970253	+	254	117619163	-	AHA_1802	-	ATPase involved in DNA repair
1756	 63.92	0	1970256..1970801	+	181	117621145	-	AHA_1803	-	hypothetical protein
1757	 66.42	0	1970848..1972056	-	402	117617635	-	AHA_1804	-	major facilitator family transporter
1758	 64.61	0	1972150..1973025	+	291	117620484	-	AHA_1805	-	transcriptional regulator
1759	 60.72	0	1973099..1974073	+	324	117619914	cysB	AHA_1806	-	transcriptional regulator CysB
1760	 60.10	0	1974152..1974745	-	197	117618596	ribA	AHA_1807	-	GTP cyclohydrolase II
1761	 59.02	0	1974995..1975687	+	230	117620043	cmk	AHA_1808	-	cytidylate kinase
1762	 54.94	-1	1975781..1977451	+	556	117617800	rpsA	AHA_1809	-	30S ribosomal protein S1
1763	 51.93	-1	1977547..1977831	+	94	117618262	ihfB	AHA_1810	-	integration host factor, beta subunit
1764	 54.74	-1	1977988..1978272	+	94	117620779	-	AHA_1811	-	hypothetical protein
1765	 61.44	0	1978282..1979448	+	388	117621224	-	AHA_1812	-	hypothetical protein
1766	 63.39	0	1979550..1980251	+	233	117618427	pyrF	AHA_1813	-	orotidine 5'-phosphate decarboxylase
1767	 61.47	0	1980299..1980856	-	185	117617944	-	AHA_1814	-	integral membrane protein
1768	 60.55	0	1980807..1981493	+	228	117619891	-	AHA_1815	-	DTW domain-containing protein
1769	 64.69	0	1981516..1982223	+	235	117619436	exsB	AHA_1816	-	exsB protein
1770	 59.80	0	1982243..1982956	+	237	117620682	-	AHA_1817	-	radical activating enzyme
1771	 54.55	-1	1982958..1983188	+	76	117620321	-	AHA_1818	-	hypothetical protein
1772	 56.03	-1	1983185..1983748	+	187	117618490	-	AHA_1819	-	ATP:cob(I)alamin adenosyltransferase, putative
1773	 56.30	-1	1983815..1984219	-	134	117618168	-	AHA_1820	-	DNA-binding protein StpA
1774	 62.62	0	1984799..1986379	+	526	117620019	-	AHA_1821	-	Na(+)/H(+) antiporter family protein
1775	 58.08	0	1986466..1987047	+	193	117619087	tdk	AHA_1822	-	thymidine kinase
1776	 62.33	0	1987116..1988453	-	445	117620901	-	AHA_1823	-	hypothetical protein
1777	 56.71	-1	1988606..1989067	+	153	117621567	-	AHA_1824	-	hypothetical protein
1778	 58.00	0	1990515..1991033	+	172	117620640	-	AHA_1826	-	hemolysin co-regulated protein
1779	 61.56	0	1991311..1993542	+	743	117621074	-	AHA_1827	-	VgrG protein
1780	 54.09	-1	1993544..1994863	+	439	117619721	-	AHA_1828	-	hypothetical protein
1781	 48.69	-2	1994873..1995862	+	329	117620164	-	AHA_1829	-	hypothetical protein
1782	 45.79	-2	1995977..1996522	+	181	117619201	-	AHA_1830	-	hypothetical protein
1783	 57.16	0	1996643..1998031	+	462	117618069	-	AHA_1831	-	hypothetical protein
1784	 52.58	-1	1998704..1999207	+	167	117618948	-	AHA_1832	-	hypothetical protein
1785	 60.01	0	1999252..2000724	+	490	117621313	-	AHA_1833	-	hypothetical protein
1786	 58.56	0	2000731..2001162	+	143	117617929	-	AHA_1834	-	hypothetical protein
1787	 62.31	0	2001166..2002932	+	588	117619565	-	AHA_1835	-	hypothetical protein
1788	 62.66	0	2002896..2003894	+	332	117620147	-	AHA_1836	-	hypothetical protein
1789	 64.67	0	2003951..2005201	+	416	117619691	-	AHA_1837	-	hypothetical protein
1790	 60.85	0	2005201..2005716	+	171	117620252	-	AHA_1838	-	putative lipoprotein
1791	 65.99	0	2005719..2007053	+	444	117618870	-	AHA_1839	-	hypothetical protein
1792	 61.88	0	2007145..2007855	+	236	117619347	-	AHA_1840	-	hypothetical protein
1793	 65.42	0	2007876..2010518	+	880	117617832	-	AHA_1841	-	ClpA/ClpB family protein
1794	 65.89	0	2010521..2012059	+	512	117617496	-	AHA_1842	-	sigma-54 dependent transcriptional regulator
1795	 69.47	+1	2012059..2012664	+	201	117620275	-	AHA_1843	-	hypothetical protein
1796	 68.68	+1	2012673..2014109	+	478	117620760	-	AHA_1844	-	ImpA-related domain-containing protein
1797	 63.83	0	2014151..2017636	+	1161	117618798	-	AHA_1845	-	ImcF family protein
1798	 62.40	0	2017683..2019113	+	476	117619389	-	AHA_1846	-	ImpA domain-containing protein
1799	 64.93	0	2019371..2019658	+	95	117619593	-	AHA_1847	-	PAAR motif-containing protein
1800	 61.49	0	2019669..2021714	+	681	117620092	-	AHA_1848	-	Rhs element Vgr family protein
1801	 49.37	-2	2021749..2024304	+	851	117620566	-	AHA_1849	-	hypothetical protein
1802	 31.60	-2	2024307..2024711	+	134	117621024	-	AHA_1850	-	hypothetical protein
1803	 58.33	0	2027356..2028219	+	287	117620767	-	AHA_1854	-	FolD bifunctional protein
1804	 48.40	-2	2028327..2028545	-	72	117618294	cspD	AHA_1855	-	cold shock domain-containing protein CspD
1805	 49.69	-2	2028774..2029091	+	105	117619917	clpS	AHA_1856	-	ATP-dependent Clp protease adaptor protein ClpS
1806	 57.66	0	2029151..2031403	+	750	117621540	clpA	AHA_1857	-	ATP-dependent Clp protease, ATP-binding subunit ClpA
1807	 47.92	-2	2031473..2031712	-	79	117621081	infA	AHA_1858	-	translation initiation factor IF-1
1808	 57.46	0	2031761..2032477	-	238	117620630	-	AHA_1859	-	arginyl-tRNA-protein transferase
1809	 59.89	0	2032474..2033181	-	235	117618258	aat	AHA_1860	-	leucyl/phenylalanyl-tRNA--protein transferase
1810	 57.54	0	2033201..2033671	+	156	117618220	-	AHA_1861	-	putative surface antigen
1811	 61.30	0	2033782..2035029	-	415	117619488	-	AHA_1862	-	response regulator protein
1812	 61.51	0	2035087..2036268	-	393	117618917	trxB	AHA_1863	-	thioredoxin-disulfide reductase
1813	 53.86	-1	2036934..2037425	+	163	117620059	lrp	AHA_1864	-	leucine-responsive transcriptional regulator
1814	 63.89	0	2037627..2040149	+	840	117619696	-	AHA_1865	-	FtsK/SpoIIIE family protein
1815	 59.61	0	2040227..2040835	+	202	117620952	lolA	AHA_1866	-	outer membrane lipoprotein carrier protein LolA
1816	 64.90	0	2040959..2042314	+	451	117620641	-	AHA_1867	-	recombination factor protein RarA
1817	 62.73	0	2042654..2043949	+	431	117619333	serS	AHA_1868	-	seryl-tRNA synthetase
1818	 56.85	-1	2044136..2044624	+	162	117618867	cvpA	AHA_1869	-	CvpA family protein
1819	 61.34	0	2044646..2046166	+	506	117621358	purF	AHA_1870	-	amidophosphoribosyltransferase
1820	 63.24	0	2046352..2047110	+	252	117620905	-	AHA_1871	-	tRNA-(ms[2]io[6]A)-hydroxylase
1821	 64.50	0	2047265..2048050	-	261	117618135	sapF	AHA_1872	-	peptide ABC transporter, ATP-binding protein SapF
1822	 63.56	0	2048106..2049104	-	332	117617647	sapD	AHA_1873	-	peptide ABC transporter, ATP-binding protein SapD
1823	 64.21	0	2049104..2049997	-	297	117617866	sapC	AHA_1874	-	peptide ABC transporter, permease protein SapC
1824	 65.62	0	2050033..2050992	-	319	117618512	sapB	AHA_1875	-	peptide ABC transporter, permease protein SapB
1825	 64.43	0	2050995..2052560	-	521	117618799	sapA	AHA_1876	-	peptide ABC transporter, periplasmic peptide-binding protein SapA
1826	 64.93	0	2052681..2053715	-	344	117620434	-	AHA_1877	-	PSP operon transcriptional activator
1827	 63.44	0	2053911..2054591	+	226	117621025	-	AHA_1878	-	phage shock protein A
1828	 60.34	0	2054595..2054831	+	78	117621464	pspB	AHA_1879	-	phage shock protein B
1829	 62.11	0	2054860..2055342	+	160	117619644	-	AHA_1880	-	phage shock protein C
1830	 65.20	0	2055450..2056880	+	476	117620218	-	AHA_1881	-	amino acid regulated cytosolic protein
1831	 68.81	+1	2056947..2057972	+	341	117618546	-	AHA_1882	-	hypothetical protein
62.23	MEAN

5.38	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the