IslandPathversion 1.0

IslandPath Analysis: Aeromonas hydrophila subsp. hydrophila ATCC 7966



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 62.23 STD DEV: 5.38
Aeromonas hydrophila subsp. hydrophila ATCC 7966, complete genome - 1..4744448
4122 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1710	 59.51	0	1918603..1919706	+	367	117619957	-	AHA_1756	-	hypothetical protein
1711	 54.17	-1	1919719..1920510	+	263	117619808	pilF	AHA_1757	-	type IV pilus biogenesis/stability protein PilW
1712	 62.62	0	1920500..1921438	+	312	117621400	-	AHA_1758	-	hypothetical protein
1713	 62.37	0	1921449..1922564	+	371	117620831	ispG	AHA_1759	-	4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase
1714	 62.28	0	1922703..1923980	+	425	117618684	hisS	AHA_1760	-	histidyl-tRNA synthetase
1715	 63.59	0	1923984..1924634	+	216	117618106	-	AHA_1761	-	TPR repeat-containing protein
1716	 64.42	0	1924654..1925811	+	385	117619948	-	AHA_1762	-	PQQ repeat-containing protein
1717	 61.07	0	1925886..1927385	+	499	117620764	engA	AHA_1763	-	GTP-binding protein EngA
1718	 65.38	0	1927490..1927723	+	77	117620012	-	AHA_1764	-	ubiquitin ligase sinat5
1719	 61.77	0	1928082..1929572	-	496	117620433	-	AHA_1765	-	solute-binding family 3 protein
1720	 65.41	0	1929554..1933627	+	1357	117619003	purL	AHA_1766	-	phosphoribosylformylglycinamidine synthase
1721	 67.13	0	1933689..1935215	-	508	117620409	-	AHA_1767	-	sensory box protein
1722	 64.50	0	1935231..1936664	-	477	117619129	-	AHA_1768	-	response regulator/sensory box/hdig domain-containing protein
1723	 66.40	0	1936661..1937791	-	376	117618555	-	AHA_1769	-	hypothetical protein
1724	 64.96	0	1937981..1939444	-	487	117620752	-	AHA_1770	-	NADH dehydrogenase subunit N
1725	 62.85	0	1939506..1941026	-	506	117618096	-	AHA_1771	-	NADH dehydrogenase subunit M
1726	 64.66	0	1941105..1942952	-	615	117619847	-	AHA_1772	-	NADH dehydrogenase subunit L
1727	 58.25	0	1942949..1943257	-	102	117618501	-	AHA_1773	-	NADH-quinone oxidoreductase chain k
1728	 61.20	0	1943257..1943805	-	182	117620263	-	AHA_1774	-	NADH dehydrogenase subunit J
1729	 60.77	0	1943816..1944358	-	180	117618050	-	AHA_1775	-	NADH dehydrogenase subunit I
1730	 61.71	0	1944487..1945455	-	322	117617484	-	AHA_1776	-	NADH dehydrogenase subunit H
1731	 66.45	0	1945452..1948181	-	909	117620988	-	AHA_1777	-	NADH dehydrogenase subunit G
1732	 65.50	0	1948261..1949628	-	455	117618370	nuoF	AHA_1778	-	NADH dehydrogenase I subunit F
1733	 62.98	0	1949625..1950167	-	180	117620389	-	AHA_1779	-	NADH dehydrogenase subunit E
1734	 61.79	0	1950229..1952034	-	601	117619929	-	AHA_1780	-	bifunctional NADH:ubiquinone oxidoreductase subunit C/D
1735	 61.63	0	1952037..1952711	-	224	117619274	-	AHA_1781	-	NADH dehydrogenase subunit B
1736	 56.05	-1	1952741..1953145	-	134	117621492	-	AHA_1782	-	NADH dehydrogenase subunit A
1737	 59.93	0	1953404..1954279	-	291	117619885	motB	AHA_1783	-	flagellar motor protein MotB
1738	 59.29	0	1954257..1955015	-	252	117618549	-	AHA_1784	-	chemotaxis MotA protein
1739	 62.46	0	1955701..1956318	-	205	117619000	-	AHA_1786	-	hypothetical protein
1740	 65.84	0	1956339..1957067	-	242	117617609	-	AHA_1787	-	hypothetical protein
1741	 62.10	0	1957064..1957654	-	196	117618060	-	AHA_1788	-	LemA protein
1742	 65.39	0	1957712..1958494	-	260	117620859	mepA	AHA_1789	-	penicillin-insensitive murein endopeptidase
1743	 63.35	0	1958652..1959194	+	180	117621360	-	AHA_1790	-	hypothetical protein
1744	 54.86	-1	1959405..1959692	+	95	117619969	-	AHA_1791	-	RNA-binding protein
1745	 63.33	0	1959764..1960663	-	299	117620396	-	AHA_1792	-	aldo/keto reductase family oxidoreductase
1746	 62.01	0	1960779..1961186	+	135	117619841	-	AHA_1793	-	bacteriophage CI repressor protein, putative
1747	 65.67	0	1961268..1961969	+	233	117620271	-	AHA_1794	-	CsgA
1748	 63.43	0	1962060..1963079	+	339	117617614	-	AHA_1795	-	L-allo-threonine aldolase
1749	 60.27	0	1963140..1963577	-	145	117617989	-	AHA_1796	-	GGDEF domain-containing protein
1750	 60.29	0	1963580..1964614	-	344	117621044	-	AHA_1797	-	response regulator
1751	 59.74	0	1964669..1965607	-	312	117621512	-	AHA_1798	-	LysR family transcriptional regulator
1752	 51.99	-1	1965681..1966382	-	233	117620431	-	AHA_1799	-	hypothetical protein
1753	 62.84	0	1966555..1968486	+	643	117620876	-	AHA_1800	-	PAS/GGDEF domain-containing protein
1754	 63.77	0	1968575..1969300	+	241	117618696	-	AHA_1801	-	nitroreductase A
1755	 58.17	0	1969489..1970253	+	254	117619163	-	AHA_1802	-	ATPase involved in DNA repair
1756	 63.92	0	1970256..1970801	+	181	117621145	-	AHA_1803	-	hypothetical protein
1757	 66.42	0	1970848..1972056	-	402	117617635	-	AHA_1804	-	major facilitator family transporter
1758	 64.61	0	1972150..1973025	+	291	117620484	-	AHA_1805	-	transcriptional regulator
1759	 60.72	0	1973099..1974073	+	324	117619914	cysB	AHA_1806	-	transcriptional regulator CysB
1760	 60.10	0	1974152..1974745	-	197	117618596	ribA	AHA_1807	-	GTP cyclohydrolase II
1761	 59.02	0	1974995..1975687	+	230	117620043	cmk	AHA_1808	-	cytidylate kinase
1762	 54.94	-1	1975781..1977451	+	556	117617800	rpsA	AHA_1809	-	30S ribosomal protein S1
1763	 51.93	-1	1977547..1977831	+	94	117618262	ihfB	AHA_1810	-	integration host factor, beta subunit
1764	 54.74	-1	1977988..1978272	+	94	117620779	-	AHA_1811	-	hypothetical protein
1765	 61.44	0	1978282..1979448	+	388	117621224	-	AHA_1812	-	hypothetical protein
1766	 63.39	0	1979550..1980251	+	233	117618427	pyrF	AHA_1813	-	orotidine 5'-phosphate decarboxylase
1767	 61.47	0	1980299..1980856	-	185	117617944	-	AHA_1814	-	integral membrane protein
1768	 60.55	0	1980807..1981493	+	228	117619891	-	AHA_1815	-	DTW domain-containing protein
1769	 64.69	0	1981516..1982223	+	235	117619436	exsB	AHA_1816	-	exsB protein
1770	 59.80	0	1982243..1982956	+	237	117620682	-	AHA_1817	-	radical activating enzyme
1771	 54.55	-1	1982958..1983188	+	76	117620321	-	AHA_1818	-	hypothetical protein
1772	 56.03	-1	1983185..1983748	+	187	117618490	-	AHA_1819	-	ATP:cob(I)alamin adenosyltransferase, putative
1773	 56.30	-1	1983815..1984219	-	134	117618168	-	AHA_1820	-	DNA-binding protein StpA
1774	 62.62	0	1984799..1986379	+	526	117620019	-	AHA_1821	-	Na(+)/H(+) antiporter family protein
1775	 58.08	0	1986466..1987047	+	193	117619087	tdk	AHA_1822	-	thymidine kinase
1776	 62.33	0	1987116..1988453	-	445	117620901	-	AHA_1823	-	hypothetical protein
1777	 56.71	-1	1988606..1989067	+	153	117621567	-	AHA_1824	-	hypothetical protein
1778	 58.00	0	1990515..1991033	+	172	117620640	-	AHA_1826	-	hemolysin co-regulated protein
1779	 61.56	0	1991311..1993542	+	743	117621074	-	AHA_1827	-	VgrG protein
1780	 54.09	-1	1993544..1994863	+	439	117619721	-	AHA_1828	-	hypothetical protein
1781	 48.69	-2	1994873..1995862	+	329	117620164	-	AHA_1829	-	hypothetical protein
1782	 45.79	-2	1995977..1996522	+	181	117619201	-	AHA_1830	-	hypothetical protein
1783	 57.16	0	1996643..1998031	+	462	117618069	-	AHA_1831	-	hypothetical protein
1784	 52.58	-1	1998704..1999207	+	167	117618948	-	AHA_1832	-	hypothetical protein
1785	 60.01	0	1999252..2000724	+	490	117621313	-	AHA_1833	-	hypothetical protein
1786	 58.56	0	2000731..2001162	+	143	117617929	-	AHA_1834	-	hypothetical protein
1787	 62.31	0	2001166..2002932	+	588	117619565	-	AHA_1835	-	hypothetical protein
1788	 62.66	0	2002896..2003894	+	332	117620147	-	AHA_1836	-	hypothetical protein
1789	 64.67	0	2003951..2005201	+	416	117619691	-	AHA_1837	-	hypothetical protein
1790	 60.85	0	2005201..2005716	+	171	117620252	-	AHA_1838	-	putative lipoprotein
1791	 65.99	0	2005719..2007053	+	444	117618870	-	AHA_1839	-	hypothetical protein
1792	 61.88	0	2007145..2007855	+	236	117619347	-	AHA_1840	-	hypothetical protein
1793	 65.42	0	2007876..2010518	+	880	117617832	-	AHA_1841	-	ClpA/ClpB family protein
1794	 65.89	0	2010521..2012059	+	512	117617496	-	AHA_1842	-	sigma-54 dependent transcriptional regulator
1795	 69.47	+1	2012059..2012664	+	201	117620275	-	AHA_1843	-	hypothetical protein
1796	 68.68	+1	2012673..2014109	+	478	117620760	-	AHA_1844	-	ImpA-related domain-containing protein
1797	 63.83	0	2014151..2017636	+	1161	117618798	-	AHA_1845	-	ImcF family protein
1798	 62.40	0	2017683..2019113	+	476	117619389	-	AHA_1846	-	ImpA domain-containing protein
1799	 64.93	0	2019371..2019658	+	95	117619593	-	AHA_1847	-	PAAR motif-containing protein
1800	 61.49	0	2019669..2021714	+	681	117620092	-	AHA_1848	-	Rhs element Vgr family protein
1801	 49.37	-2	2021749..2024304	+	851	117620566	-	AHA_1849	-	hypothetical protein
1802	 31.60	-2	2024307..2024711	+	134	117621024	-	AHA_1850	-	hypothetical protein
1803	 58.33	0	2027356..2028219	+	287	117620767	-	AHA_1854	-	FolD bifunctional protein
1804	 48.40	-2	2028327..2028545	-	72	117618294	cspD	AHA_1855	-	cold shock domain-containing protein CspD
1805	 49.69	-2	2028774..2029091	+	105	117619917	clpS	AHA_1856	-	ATP-dependent Clp protease adaptor protein ClpS
1806	 57.66	0	2029151..2031403	+	750	117621540	clpA	AHA_1857	-	ATP-dependent Clp protease, ATP-binding subunit ClpA
1807	 47.92	-2	2031473..2031712	-	79	117621081	infA	AHA_1858	-	translation initiation factor IF-1
1808	 57.46	0	2031761..2032477	-	238	117620630	-	AHA_1859	-	arginyl-tRNA-protein transferase
1809	 59.89	0	2032474..2033181	-	235	117618258	aat	AHA_1860	-	leucyl/phenylalanyl-tRNA--protein transferase
62.23	MEAN

5.38	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.