IslandPathversion 1.0

IslandPath Analysis: Aeromonas hydrophila subsp. hydrophila ATCC 7966



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 62.23 STD DEV: 5.38
Aeromonas hydrophila subsp. hydrophila ATCC 7966, complete genome - 1..4744448
4122 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1695	 65.64	0	1905522..1906394	-	290	117618241	-	AHA_1741	-	collagenase
1696	 65.16	0	1906407..1907402	-	331	117618957	-	AHA_1742	-	STM-proteaseA
1697	 58.33	0	1907593..1908132	+	179	117620573	-	AHA_1744	-	sterol binding protein
1698	 65.23	0	1908079..1908495	-	138	117621454	-	AHA_1743	-	hypothetical protein
1699	 60.47	0	1908675..1909400	+	241	117618072	-	AHA_1745	-	RNA methyltransferase
1700	 62.10	0	1909494..1909997	+	167	117621543	iscR	AHA_1746	-	iron-sulfur cluster assembly transcription factor IscR
1701	 59.51	0	1910055..1911269	+	404	117619481	iscS	AHA_1747	-	cysteine desulfurase IscS
1702	 56.77	-1	1911311..1911694	+	127	117618910	iscU	AHA_1748	-	scaffold protein
1703	 58.33	0	1911710..1912033	+	107	117620083	iscA	AHA_1749	-	iron-sulfur cluster assembly protein IscA
1704	 58.77	0	1912156..1912674	+	172	117619557	hscB	AHA_1750	-	Fe-S protein assembly co-chaperone HscB
1705	 64.99	0	1912703..1914550	+	615	117619325	hscA	AHA_1751	-	Fe-S protein assembly chaperone HscA
1706	 63.13	0	1914552..1914890	+	112	117618989	fdx	AHA_1752	-	ferredoxin, 2Fe-2S type, ISC system
1707	 66.90	0	1915048..1916349	+	433	117620094	pepB	AHA_1753	-	aminopeptidase B
1708	 67.91	+1	1916453..1917736	+	427	117618593	-	AHA_1754	-	aminopeptidase B
1709	 62.70	0	1918006..1918434	+	142	117620412	-	AHA_1755	-	nucleoside diphosphate kinase
1710	 59.51	0	1918603..1919706	+	367	117619957	-	AHA_1756	-	hypothetical protein
1711	 54.17	-1	1919719..1920510	+	263	117619808	pilF	AHA_1757	-	type IV pilus biogenesis/stability protein PilW
1712	 62.62	0	1920500..1921438	+	312	117621400	-	AHA_1758	-	hypothetical protein
1713	 62.37	0	1921449..1922564	+	371	117620831	ispG	AHA_1759	-	4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase
1714	 62.28	0	1922703..1923980	+	425	117618684	hisS	AHA_1760	-	histidyl-tRNA synthetase
1715	 63.59	0	1923984..1924634	+	216	117618106	-	AHA_1761	-	TPR repeat-containing protein
1716	 64.42	0	1924654..1925811	+	385	117619948	-	AHA_1762	-	PQQ repeat-containing protein
1717	 61.07	0	1925886..1927385	+	499	117620764	engA	AHA_1763	-	GTP-binding protein EngA
1718	 65.38	0	1927490..1927723	+	77	117620012	-	AHA_1764	-	ubiquitin ligase sinat5
1719	 61.77	0	1928082..1929572	-	496	117620433	-	AHA_1765	-	solute-binding family 3 protein
1720	 65.41	0	1929554..1933627	+	1357	117619003	purL	AHA_1766	-	phosphoribosylformylglycinamidine synthase
1721	 67.13	0	1933689..1935215	-	508	117620409	-	AHA_1767	-	sensory box protein
1722	 64.50	0	1935231..1936664	-	477	117619129	-	AHA_1768	-	response regulator/sensory box/hdig domain-containing protein
1723	 66.40	0	1936661..1937791	-	376	117618555	-	AHA_1769	-	hypothetical protein
1724	 64.96	0	1937981..1939444	-	487	117620752	-	AHA_1770	-	NADH dehydrogenase subunit N
1725	 62.85	0	1939506..1941026	-	506	117618096	-	AHA_1771	-	NADH dehydrogenase subunit M
1726	 64.66	0	1941105..1942952	-	615	117619847	-	AHA_1772	-	NADH dehydrogenase subunit L
1727	 58.25	0	1942949..1943257	-	102	117618501	-	AHA_1773	-	NADH-quinone oxidoreductase chain k
1728	 61.20	0	1943257..1943805	-	182	117620263	-	AHA_1774	-	NADH dehydrogenase subunit J
1729	 60.77	0	1943816..1944358	-	180	117618050	-	AHA_1775	-	NADH dehydrogenase subunit I
1730	 61.71	0	1944487..1945455	-	322	117617484	-	AHA_1776	-	NADH dehydrogenase subunit H
1731	 66.45	0	1945452..1948181	-	909	117620988	-	AHA_1777	-	NADH dehydrogenase subunit G
1732	 65.50	0	1948261..1949628	-	455	117618370	nuoF	AHA_1778	-	NADH dehydrogenase I subunit F
1733	 62.98	0	1949625..1950167	-	180	117620389	-	AHA_1779	-	NADH dehydrogenase subunit E
1734	 61.79	0	1950229..1952034	-	601	117619929	-	AHA_1780	-	bifunctional NADH:ubiquinone oxidoreductase subunit C/D
1735	 61.63	0	1952037..1952711	-	224	117619274	-	AHA_1781	-	NADH dehydrogenase subunit B
1736	 56.05	-1	1952741..1953145	-	134	117621492	-	AHA_1782	-	NADH dehydrogenase subunit A
1737	 59.93	0	1953404..1954279	-	291	117619885	motB	AHA_1783	-	flagellar motor protein MotB
1738	 59.29	0	1954257..1955015	-	252	117618549	-	AHA_1784	-	chemotaxis MotA protein
1739	 62.46	0	1955701..1956318	-	205	117619000	-	AHA_1786	-	hypothetical protein
1740	 65.84	0	1956339..1957067	-	242	117617609	-	AHA_1787	-	hypothetical protein
1741	 62.10	0	1957064..1957654	-	196	117618060	-	AHA_1788	-	LemA protein
1742	 65.39	0	1957712..1958494	-	260	117620859	mepA	AHA_1789	-	penicillin-insensitive murein endopeptidase
1743	 63.35	0	1958652..1959194	+	180	117621360	-	AHA_1790	-	hypothetical protein
1744	 54.86	-1	1959405..1959692	+	95	117619969	-	AHA_1791	-	RNA-binding protein
1745	 63.33	0	1959764..1960663	-	299	117620396	-	AHA_1792	-	aldo/keto reductase family oxidoreductase
1746	 62.01	0	1960779..1961186	+	135	117619841	-	AHA_1793	-	bacteriophage CI repressor protein, putative
1747	 65.67	0	1961268..1961969	+	233	117620271	-	AHA_1794	-	CsgA
1748	 63.43	0	1962060..1963079	+	339	117617614	-	AHA_1795	-	L-allo-threonine aldolase
1749	 60.27	0	1963140..1963577	-	145	117617989	-	AHA_1796	-	GGDEF domain-containing protein
1750	 60.29	0	1963580..1964614	-	344	117621044	-	AHA_1797	-	response regulator
1751	 59.74	0	1964669..1965607	-	312	117621512	-	AHA_1798	-	LysR family transcriptional regulator
1752	 51.99	-1	1965681..1966382	-	233	117620431	-	AHA_1799	-	hypothetical protein
1753	 62.84	0	1966555..1968486	+	643	117620876	-	AHA_1800	-	PAS/GGDEF domain-containing protein
1754	 63.77	0	1968575..1969300	+	241	117618696	-	AHA_1801	-	nitroreductase A
1755	 58.17	0	1969489..1970253	+	254	117619163	-	AHA_1802	-	ATPase involved in DNA repair
1756	 63.92	0	1970256..1970801	+	181	117621145	-	AHA_1803	-	hypothetical protein
1757	 66.42	0	1970848..1972056	-	402	117617635	-	AHA_1804	-	major facilitator family transporter
1758	 64.61	0	1972150..1973025	+	291	117620484	-	AHA_1805	-	transcriptional regulator
1759	 60.72	0	1973099..1974073	+	324	117619914	cysB	AHA_1806	-	transcriptional regulator CysB
1760	 60.10	0	1974152..1974745	-	197	117618596	ribA	AHA_1807	-	GTP cyclohydrolase II
1761	 59.02	0	1974995..1975687	+	230	117620043	cmk	AHA_1808	-	cytidylate kinase
1762	 54.94	-1	1975781..1977451	+	556	117617800	rpsA	AHA_1809	-	30S ribosomal protein S1
1763	 51.93	-1	1977547..1977831	+	94	117618262	ihfB	AHA_1810	-	integration host factor, beta subunit
1764	 54.74	-1	1977988..1978272	+	94	117620779	-	AHA_1811	-	hypothetical protein
1765	 61.44	0	1978282..1979448	+	388	117621224	-	AHA_1812	-	hypothetical protein
1766	 63.39	0	1979550..1980251	+	233	117618427	pyrF	AHA_1813	-	orotidine 5'-phosphate decarboxylase
1767	 61.47	0	1980299..1980856	-	185	117617944	-	AHA_1814	-	integral membrane protein
1768	 60.55	0	1980807..1981493	+	228	117619891	-	AHA_1815	-	DTW domain-containing protein
1769	 64.69	0	1981516..1982223	+	235	117619436	exsB	AHA_1816	-	exsB protein
1770	 59.80	0	1982243..1982956	+	237	117620682	-	AHA_1817	-	radical activating enzyme
1771	 54.55	-1	1982958..1983188	+	76	117620321	-	AHA_1818	-	hypothetical protein
1772	 56.03	-1	1983185..1983748	+	187	117618490	-	AHA_1819	-	ATP:cob(I)alamin adenosyltransferase, putative
1773	 56.30	-1	1983815..1984219	-	134	117618168	-	AHA_1820	-	DNA-binding protein StpA
1774	 62.62	0	1984799..1986379	+	526	117620019	-	AHA_1821	-	Na(+)/H(+) antiporter family protein
1775	 58.08	0	1986466..1987047	+	193	117619087	tdk	AHA_1822	-	thymidine kinase
1776	 62.33	0	1987116..1988453	-	445	117620901	-	AHA_1823	-	hypothetical protein
1777	 56.71	-1	1988606..1989067	+	153	117621567	-	AHA_1824	-	hypothetical protein
1778	 58.00	0	1990515..1991033	+	172	117620640	-	AHA_1826	-	hemolysin co-regulated protein
1779	 61.56	0	1991311..1993542	+	743	117621074	-	AHA_1827	-	VgrG protein
1780	 54.09	-1	1993544..1994863	+	439	117619721	-	AHA_1828	-	hypothetical protein
1781	 48.69	-2	1994873..1995862	+	329	117620164	-	AHA_1829	-	hypothetical protein
1782	 45.79	-2	1995977..1996522	+	181	117619201	-	AHA_1830	-	hypothetical protein
1783	 57.16	0	1996643..1998031	+	462	117618069	-	AHA_1831	-	hypothetical protein
1784	 52.58	-1	1998704..1999207	+	167	117618948	-	AHA_1832	-	hypothetical protein
1785	 60.01	0	1999252..2000724	+	490	117621313	-	AHA_1833	-	hypothetical protein
1786	 58.56	0	2000731..2001162	+	143	117617929	-	AHA_1834	-	hypothetical protein
1787	 62.31	0	2001166..2002932	+	588	117619565	-	AHA_1835	-	hypothetical protein
1788	 62.66	0	2002896..2003894	+	332	117620147	-	AHA_1836	-	hypothetical protein
1789	 64.67	0	2003951..2005201	+	416	117619691	-	AHA_1837	-	hypothetical protein
1790	 60.85	0	2005201..2005716	+	171	117620252	-	AHA_1838	-	putative lipoprotein
1791	 65.99	0	2005719..2007053	+	444	117618870	-	AHA_1839	-	hypothetical protein
1792	 61.88	0	2007145..2007855	+	236	117619347	-	AHA_1840	-	hypothetical protein
1793	 65.42	0	2007876..2010518	+	880	117617832	-	AHA_1841	-	ClpA/ClpB family protein
1794	 65.89	0	2010521..2012059	+	512	117617496	-	AHA_1842	-	sigma-54 dependent transcriptional regulator
62.23	MEAN

5.38	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the