IslandPathversion 1.0

IslandPath Analysis: Aeromonas hydrophila subsp. hydrophila ATCC 7966



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 62.23 STD DEV: 5.38
Aeromonas hydrophila subsp. hydrophila ATCC 7966, complete genome - 1..4744448
4122 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1611	 54.65	-1	1806566..1807081	-	171	117617813	-	AHA_1657	-	hypothetical protein
1612	 56.51	-1	1807231..1807821	-	196	117621507	-	AHA_1658	-	ecotin
1613	 66.85	0	1807945..1808502	-	185	117621013	-	AHA_1659	-	hypothetical protein
1614	 67.47	0	1808499..1809872	-	457	117618030	-	AHA_1660	-	hypothetical protein
1615	 68.03	+1	1809932..1812346	-	804	117617529	-	AHA_1661	-	proprotein convertase P-domain-containing protein
1616	 70.56	+1	1812379..1814457	-	692	117619592	-	AHA_1662	-	protease II
1617	 65.70	0	1814457..1816619	-	720	117619270	-	AHA_1663	-	hemin receptor
1618	 60.29	0	1816926..1818776	-	616	117620319	-	AHA_1664	-	putative sulfatase
1619	 56.58	-1	1818820..1819047	-	75	117620193	-	AHA_1665	-	hypothetical protein
1620	 59.33	0	1819040..1820170	+	376	117618306	-	AHA_1666	-	nucleoid-associated protein NdpA
1621	 58.38	0	1820566..1821747	+	393	117618791	malE	AHA_1667	-	maltose ABC transporter periplasmic protein
1622	 57.71	0	1821823..1823475	+	550	117621047	malF	AHA_1668	-	maltose transporter membrane protein
1623	 61.28	0	1823488..1824378	+	296	117617897	malG	AHA_1669	-	maltose transporter permease
1624	 62.36	0	1824448..1825584	+	378	117618794	-	AHA_1670	-	maltose/maltodextrin import ATP-binding protein MalK
1625	 64.95	0	1825700..1826515	-	271	117619740	-	AHA_1671	-	polyphosphate kinase 2
1626	 66.67	0	1826628..1827428	+	266	117617916	-	AHA_1672	-	alpha/beta fold family hydrolase
1627	 60.97	0	1827514..1828320	-	268	117618380	mipA	AHA_1673	-	MltA-interacting protein MipA
1628	 63.31	0	1828356..1829426	-	356	117620612	-	AHA_1674	-	PerM family permease
1629	 65.02	0	1829442..1829684	-	80	117621045	-	AHA_1675	-	hypothetical protein
1630	 64.89	0	1829864..1831267	+	467	117619572	-	AHA_1676	-	zinc metalloprotease
1631	 65.42	0	1831387..1831869	-	160	117620194	-	AHA_1677	-	thioredoxin
1632	 62.11	0	1831930..1832280	+	116	117619418	arsC-1	AHA_1678	-	arsenate reductase
1633	 65.15	0	1832277..1832672	+	131	117618698	-	AHA_1679	-	hypothetical protein
1634	 62.93	0	1832963..1834033	+	356	117618246	-	AHA_1680	-	penicillin acylase
1635	 65.86	0	1834070..1834690	-	206	117617502	-	AHA_1681	-	hypothetical protein
1636	 69.67	+1	1834867..1835997	+	376	117621180	iadA	AHA_1682	-	isoaspartyl dipeptidase
1637	 63.46	0	1836108..1837010	-	300	117621525	-	AHA_1683	-	hypothetical protein
1638	 60.31	0	1837544..1838314	+	256	117618079	-	AHA_1684	-	histidine ABC transporter, ATP-binding protein
1639	 59.30	0	1838380..1839153	+	257	117617755	-	AHA_1685	-	arginine and ornithine binding protein
1640	 60.86	0	1839358..1840098	+	246	117619256	-	AHA_1686	-	histidine ABC transporter, permease protein HisQ
1641	 61.33	0	1840102..1840794	+	230	117620358	-	AHA_1687	-	histidine ABC transporter, permease protein HisM
1642	 65.11	0	1840846..1841487	-	213	117619888	-	AHA_1688	-	hypothetical protein
1643	 60.07	0	1841574..1842392	-	272	117619525	pflA	AHA_1689	-	pyruvate formate lyase-activating enzyme 1
1644	 64.52	0	1842458..1845436	-	992	117620983	-	AHA_1690	-	PAS/GGDEF domain-containing protein
1645	 63.88	0	1845532..1847220	+	562	117618080	-	AHA_1691	-	NADH dehydrogenase
1646	 65.48	0	1847308..1852275	+	1655	117617541	-	AHA_1692	-	alpha-2-macroglobulin, N-terminal:Alpha-2-macroglobulin, N-terminal
1647	 67.08	0	1852286..1854685	+	799	117619285	pbpC	AHA_1693	-	penicillin-binding protein 1C
1648	 64.55	0	1854787..1855590	-	267	117619300	-	AHA_1694	-	hypothetical protein
1649	 59.56	0	1855925..1857373	+	482	117620212	thiI	AHA_1695	-	thiamine biosynthesis protein ThiI
1650	 57.73	0	1857452..1857988	-	178	117618642	-	AHA_1696	-	hypothetical protein
1651	 59.72	0	1857946..1858578	-	210	117621126	-	AHA_1697	-	hypothetical protein
1652	 50.72	-2	1858995..1859903	+	302	117619531	-	AHA_1698	-	flagellin
1653	 50.88	-2	1860482..1861387	+	301	117618426	-	AHA_1699	-	flagellin
1654	 50.34	-2	1861426..1861866	+	146	117620915	-	AHA_1700	-	flagellin protein
1655	 52.27	-1	1861893..1863302	+	469	117620517	fliD	AHA_1701	-	flagellar hook-associated protein 2
1656	 54.37	-1	1863328..1863750	+	140	117618838	fliS	AHA_1702	-	flagellar protein FliS
1657	 49.10	-2	1864132..1866141	+	669	117619628	-	AHA_1703	-	hypothetical protein
1658	 62.29	0	1866230..1867051	-	273	117619898	-	AHA_1704	-	periplasmic binding protein
1659	 67.36	0	1867044..1867913	-	289	117621445	-	AHA_1705	-	cobalamin biosynthesis protein CobD
1660	 61.33	0	1867991..1868683	-	230	117620840	mtnN-2	AHA_1706	-	MTA/SAH nucleosidase
1661	 62.71	0	1868791..1869549	-	252	117617669	-	AHA_1707	-	hypothetical protein
1662	 68.38	+1	1869639..1870571	-	310	117621183	-	AHA_1708	-	GufA protein
1663	 62.61	0	1870808..1872580	+	590	117618584	-	AHA_1709	-	methyl-accepting chemotaxis protein
1664	 56.37	-1	1873040..1873894	-	284	117618381	-	AHA_1710	-	inositol-1-monophosphatase
1665	 60.75	0	1874045..1874500	+	151	117620623	-	AHA_1711	-	hypothetical protein
1666	 61.09	0	1874693..1875355	+	220	117620162	-	AHA_1712	-	glutathione S-transferase
1667	 64.17	0	1875606..1876805	+	399	117617652	emrD	AHA_1713	-	multidrug resistance protein D
1668	 54.93	-1	1877170..1877544	-	124	117620065	-	AHA_1714	-	hypothetical protein
1669	 61.40	0	1877676..1878245	+	189	117620775	-	AHA_1715	-	YecA family protein
1670	 68.64	+1	1878429..1879646	+	405	117621208	ubiH	AHA_1716	-	2-polyprenyl-6-methoxyphenol 4-hydroxylase
1671	 69.35	+1	1879742..1880971	+	409	117618973	-	AHA_1717	-	2-octaprenyl-6-methoxyphenol hydroxylase
1672	 63.39	0	1881450..1882547	+	365	117619425	gcvT	AHA_1718	-	glycine cleavage system aminomethyltransferase T
1673	 63.08	0	1882653..1883042	+	129	117619614	gcvH	AHA_1719	-	glycine cleavage system H protein
1674	 64.41	0	1883295..1886171	+	958	117620071	gcvP	AHA_1720	-	glycine dehydrogenase
1675	 55.31	-1	1886286..1887359	-	357	117620214	-	AHA_1721	-	hypothetical protein
1676	 54.21	-1	1887466..1887762	+	98	117620666	-	AHA_1722	-	ArsR family transcriptional regulator
1677	 55.21	-1	1887834..1888217	+	127	117617788	-	AHA_1723	-	arsenic operon regulator
1678	 56.88	0	1888221..1888649	+	142	117619821	-	AHA_1724	-	arsenical resistance operon trans-acting repressor ArsD
1679	 61.44	0	1888718..1890517	+	599	117618702	-	AHA_1725	-	arsenical pump-driving ATPase
1680	 59.03	0	1890616..1891650	+	344	117618201	arsB	AHA_1726	-	arsenical-resistance protein
1681	 61.34	0	1891647..1892078	+	143	117621520	arsC-2	AHA_1727	-	arsenate reductase
1682	 64.13	0	1892219..1892968	+	249	117620933	-	AHA_1728	-	methyltransferase
1683	 60.84	0	1893079..1893387	-	102	117620384	-	AHA_1729	-	hypothetical protein
1684	 66.43	0	1893491..1894783	+	430	117619810	-	AHA_1730	-	major facilitator family transporter
1685	 63.63	0	1894849..1896429	-	526	117619232	-	AHA_1731	-	alkyl hydroperoxide reductase subunit F
1686	 59.26	0	1896523..1897089	-	188	117618506	-	AHA_1732	-	alkyl hydroperoxide reductase subunit C
1687	 60.18	0	1897750..1898196	-	148	117618836	-	AHA_1733	-	CBS domain-containing protein
1688	 62.73	0	1898409..1899476	+	355	117621432	queA	AHA_1734	-	S-adenosylmethionine:tRNA ribosyltransferase-isomerase
1689	 60.25	0	1899547..1900683	+	378	117619612	tgt	AHA_1735	-	queuine tRNA-ribosyltransferase
1690	 55.95	-1	1900734..1901069	+	111	117620253	yajC	AHA_1736	-	preprotein translocase, YajC subunit
1691	 60.79	0	1901088..1902941	+	617	117619109	secD-1	AHA_1737	-	protein-export membrane protein SecD
1692	 60.55	0	1902951..1903898	+	315	117619487	secF-1	AHA_1738	-	protein-export membrane protein SecF
1693	 61.52	0	1903998..1904366	+	122	117617718	-	AHA_1739	-	rhodanese domain-containing protein
1694	 59.51	0	1904511..1905404	+	297	117618287	-	AHA_1740	-	lipoprotein NlpI
1695	 65.64	0	1905522..1906394	-	290	117618241	-	AHA_1741	-	collagenase
1696	 65.16	0	1906407..1907402	-	331	117618957	-	AHA_1742	-	STM-proteaseA
1697	 58.33	0	1907593..1908132	+	179	117620573	-	AHA_1744	-	sterol binding protein
1698	 65.23	0	1908079..1908495	-	138	117621454	-	AHA_1743	-	hypothetical protein
1699	 60.47	0	1908675..1909400	+	241	117618072	-	AHA_1745	-	RNA methyltransferase
1700	 62.10	0	1909494..1909997	+	167	117621543	iscR	AHA_1746	-	iron-sulfur cluster assembly transcription factor IscR
1701	 59.51	0	1910055..1911269	+	404	117619481	iscS	AHA_1747	-	cysteine desulfurase IscS
1702	 56.77	-1	1911311..1911694	+	127	117618910	iscU	AHA_1748	-	scaffold protein
1703	 58.33	0	1911710..1912033	+	107	117620083	iscA	AHA_1749	-	iron-sulfur cluster assembly protein IscA
1704	 58.77	0	1912156..1912674	+	172	117619557	hscB	AHA_1750	-	Fe-S protein assembly co-chaperone HscB
1705	 64.99	0	1912703..1914550	+	615	117619325	hscA	AHA_1751	-	Fe-S protein assembly chaperone HscA
1706	 63.13	0	1914552..1914890	+	112	117618989	fdx	AHA_1752	-	ferredoxin, 2Fe-2S type, ISC system
1707	 66.90	0	1915048..1916349	+	433	117620094	pepB	AHA_1753	-	aminopeptidase B
1708	 67.91	+1	1916453..1917736	+	427	117618593	-	AHA_1754	-	aminopeptidase B
1709	 62.70	0	1918006..1918434	+	142	117620412	-	AHA_1755	-	nucleoside diphosphate kinase
1710	 59.51	0	1918603..1919706	+	367	117619957	-	AHA_1756	-	hypothetical protein
62.23	MEAN

5.38	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.