IslandPathversion 1.0

IslandPath Analysis: Aeromonas hydrophila subsp. hydrophila ATCC 7966



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 62.23 STD DEV: 5.38
Aeromonas hydrophila subsp. hydrophila ATCC 7966, complete genome - 1..4744448
4122 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1579	 66.54	0	1773602..1775185	-	527	117618216	-	AHA_1625	-	hypothetical protein
1580	 65.33	0	1775383..1776729	-	448	117620585	-	AHA_1626	-	glutamate dehydrogenase
1581	 61.29	0	1777267..1777359	+	30	117618659	-	AHA_1627	-	hypothetical protein
1582	 63.48	0	1777349..1778383	+	344	117619273	-	AHA_1628	-	23S rRNA pseudouridine synthase F
1583	 70.79	+1	1778456..1779691	-	411	117619958	-	AHA_1629	-	cyanate transport protein CynX
1584	 68.65	+1	1779684..1780187	-	167	117620375	-	AHA_1630	-	cytidine/deoxycytidylate deaminase, zinc-binding region
1585	 71.38	+1	1780298..1781146	+	282	117618445	-	AHA_1631	-	LysR family transcriptional regulator
1586	 68.83	+1	1781169..1782368	-	399	117620875	-	AHA_1632	-	MFS family transporter
1587	 67.74	+1	1782480..1782947	-	155	117617522	-	AHA_1633	-	transcriptional regulatory protein
1588	 61.54	0	1782988..1783143	-	51	117617988	-	AHA_1634	-	hypothetical protein
1589	 64.76	0	1783225..1783695	-	156	117619412	-	AHA_1635	-	cytosolic long-chain acyl-CoA thioester hydrolase family protein
1590	 67.31	0	1783716..1784027	-	103	117618569	-	AHA_1636	-	hypothetical protein
1591	 66.82	0	1784170..1784829	+	219	117618328	-	AHA_1637	-	inner membrane protein YebE
1592	 59.92	0	1784965..1785483	+	172	117617742	-	AHA_1638	-	putative acetyltransferase
1593	 68.26	+1	1785524..1786963	-	479	117620868	-	AHA_1639	-	GntR family transcriptional regulator
1594	 63.68	0	1787084..1788655	+	523	117621314	-	AHA_1640	-	cytochrome D ubiquinol oxidase subunit I
1595	 66.40	0	1788655..1789782	+	375	117619551	cydB-1	AHA_1641	-	cytochrome D ubiquinol oxidase, subunit II
1596	 59.65	0	1789810..1789923	+	37	117620503	-	AHA_1642	-	cyd operon protein YbgT
1597	 66.75	0	1789986..1791158	-	390	117618635	-	AHA_1643	-	major facilitator transporter
1598	 63.81	0	1791533..1792336	-	267	117619124	dkgB	AHA_1644	-	2,5-diketo-D-gluconate reductase B
1599	 62.29	0	1792384..1792680	-	98	117619001	-	AHA_1645	-	antibiotic biosynthesis monooxygenase family protein
1600	 59.78	0	1792858..1793220	-	120	117619040	-	AHA_1646	-	glyoxalase/dioxygenase superfamily protein
1601	 66.22	0	1793800..1794702	+	300	117619472	-	AHA_1647	-	putative HTH-type transcriptional regulator YafC
1602	 61.54	0	1794869..1796371	-	500	117621177	glpK	AHA_1648	-	glycerol kinase
1603	 61.48	0	1796426..1797274	-	282	117620737	glpF	AHA_1649	-	glycerol uptake facilitator protein
1604	 60.69	0	1797762..1799117	+	451	117620553	glpT	AHA_1650	-	sn-glycerol-3-phosphate transporter
1605	 61.53	0	1799219..1799977	+	252	117620109	glpR	AHA_1651	-	glycerol-3-phosphate regulon repressor
1606	 65.05	0	1800299..1801786	+	495	117617661	glpD	AHA_1652	-	glycerol-3-phosphate dehydrogenase
1607	 59.63	0	1801889..1802968	+	359	117621321	glpQ	AHA_1653	-	glycerophosphodiester phosphodiesterase
1608	 62.48	0	1803287..1804360	+	357	117618228	-	AHA_1654	-	phospho-2-dehydro-3-deoxyheptonate aldolase
1609	 65.70	0	1804479..1805618	+	379	117621007	tyrA	AHA_1655	-	bifunctional chorismate mutase/prephenate dehydrogenase
1610	 64.61	0	1805691..1806566	-	291	117618458	-	AHA_1656	-	LysR family transcriptional regulator
1611	 54.65	-1	1806566..1807081	-	171	117617813	-	AHA_1657	-	hypothetical protein
1612	 56.51	-1	1807231..1807821	-	196	117621507	-	AHA_1658	-	ecotin
1613	 66.85	0	1807945..1808502	-	185	117621013	-	AHA_1659	-	hypothetical protein
1614	 67.47	0	1808499..1809872	-	457	117618030	-	AHA_1660	-	hypothetical protein
1615	 68.03	+1	1809932..1812346	-	804	117617529	-	AHA_1661	-	proprotein convertase P-domain-containing protein
1616	 70.56	+1	1812379..1814457	-	692	117619592	-	AHA_1662	-	protease II
1617	 65.70	0	1814457..1816619	-	720	117619270	-	AHA_1663	-	hemin receptor
1618	 60.29	0	1816926..1818776	-	616	117620319	-	AHA_1664	-	putative sulfatase
1619	 56.58	-1	1818820..1819047	-	75	117620193	-	AHA_1665	-	hypothetical protein
1620	 59.33	0	1819040..1820170	+	376	117618306	-	AHA_1666	-	nucleoid-associated protein NdpA
1621	 58.38	0	1820566..1821747	+	393	117618791	malE	AHA_1667	-	maltose ABC transporter periplasmic protein
1622	 57.71	0	1821823..1823475	+	550	117621047	malF	AHA_1668	-	maltose transporter membrane protein
1623	 61.28	0	1823488..1824378	+	296	117617897	malG	AHA_1669	-	maltose transporter permease
1624	 62.36	0	1824448..1825584	+	378	117618794	-	AHA_1670	-	maltose/maltodextrin import ATP-binding protein MalK
1625	 64.95	0	1825700..1826515	-	271	117619740	-	AHA_1671	-	polyphosphate kinase 2
1626	 66.67	0	1826628..1827428	+	266	117617916	-	AHA_1672	-	alpha/beta fold family hydrolase
1627	 60.97	0	1827514..1828320	-	268	117618380	mipA	AHA_1673	-	MltA-interacting protein MipA
1628	 63.31	0	1828356..1829426	-	356	117620612	-	AHA_1674	-	PerM family permease
1629	 65.02	0	1829442..1829684	-	80	117621045	-	AHA_1675	-	hypothetical protein
1630	 64.89	0	1829864..1831267	+	467	117619572	-	AHA_1676	-	zinc metalloprotease
1631	 65.42	0	1831387..1831869	-	160	117620194	-	AHA_1677	-	thioredoxin
1632	 62.11	0	1831930..1832280	+	116	117619418	arsC-1	AHA_1678	-	arsenate reductase
1633	 65.15	0	1832277..1832672	+	131	117618698	-	AHA_1679	-	hypothetical protein
1634	 62.93	0	1832963..1834033	+	356	117618246	-	AHA_1680	-	penicillin acylase
1635	 65.86	0	1834070..1834690	-	206	117617502	-	AHA_1681	-	hypothetical protein
1636	 69.67	+1	1834867..1835997	+	376	117621180	iadA	AHA_1682	-	isoaspartyl dipeptidase
1637	 63.46	0	1836108..1837010	-	300	117621525	-	AHA_1683	-	hypothetical protein
1638	 60.31	0	1837544..1838314	+	256	117618079	-	AHA_1684	-	histidine ABC transporter, ATP-binding protein
1639	 59.30	0	1838380..1839153	+	257	117617755	-	AHA_1685	-	arginine and ornithine binding protein
1640	 60.86	0	1839358..1840098	+	246	117619256	-	AHA_1686	-	histidine ABC transporter, permease protein HisQ
1641	 61.33	0	1840102..1840794	+	230	117620358	-	AHA_1687	-	histidine ABC transporter, permease protein HisM
1642	 65.11	0	1840846..1841487	-	213	117619888	-	AHA_1688	-	hypothetical protein
1643	 60.07	0	1841574..1842392	-	272	117619525	pflA	AHA_1689	-	pyruvate formate lyase-activating enzyme 1
1644	 64.52	0	1842458..1845436	-	992	117620983	-	AHA_1690	-	PAS/GGDEF domain-containing protein
1645	 63.88	0	1845532..1847220	+	562	117618080	-	AHA_1691	-	NADH dehydrogenase
1646	 65.48	0	1847308..1852275	+	1655	117617541	-	AHA_1692	-	alpha-2-macroglobulin, N-terminal:Alpha-2-macroglobulin, N-terminal
1647	 67.08	0	1852286..1854685	+	799	117619285	pbpC	AHA_1693	-	penicillin-binding protein 1C
1648	 64.55	0	1854787..1855590	-	267	117619300	-	AHA_1694	-	hypothetical protein
1649	 59.56	0	1855925..1857373	+	482	117620212	thiI	AHA_1695	-	thiamine biosynthesis protein ThiI
1650	 57.73	0	1857452..1857988	-	178	117618642	-	AHA_1696	-	hypothetical protein
1651	 59.72	0	1857946..1858578	-	210	117621126	-	AHA_1697	-	hypothetical protein
1652	 50.72	-2	1858995..1859903	+	302	117619531	-	AHA_1698	-	flagellin
1653	 50.88	-2	1860482..1861387	+	301	117618426	-	AHA_1699	-	flagellin
1654	 50.34	-2	1861426..1861866	+	146	117620915	-	AHA_1700	-	flagellin protein
1655	 52.27	-1	1861893..1863302	+	469	117620517	fliD	AHA_1701	-	flagellar hook-associated protein 2
1656	 54.37	-1	1863328..1863750	+	140	117618838	fliS	AHA_1702	-	flagellar protein FliS
1657	 49.10	-2	1864132..1866141	+	669	117619628	-	AHA_1703	-	hypothetical protein
1658	 62.29	0	1866230..1867051	-	273	117619898	-	AHA_1704	-	periplasmic binding protein
1659	 67.36	0	1867044..1867913	-	289	117621445	-	AHA_1705	-	cobalamin biosynthesis protein CobD
1660	 61.33	0	1867991..1868683	-	230	117620840	mtnN-2	AHA_1706	-	MTA/SAH nucleosidase
1661	 62.71	0	1868791..1869549	-	252	117617669	-	AHA_1707	-	hypothetical protein
1662	 68.38	+1	1869639..1870571	-	310	117621183	-	AHA_1708	-	GufA protein
1663	 62.61	0	1870808..1872580	+	590	117618584	-	AHA_1709	-	methyl-accepting chemotaxis protein
1664	 56.37	-1	1873040..1873894	-	284	117618381	-	AHA_1710	-	inositol-1-monophosphatase
1665	 60.75	0	1874045..1874500	+	151	117620623	-	AHA_1711	-	hypothetical protein
1666	 61.09	0	1874693..1875355	+	220	117620162	-	AHA_1712	-	glutathione S-transferase
1667	 64.17	0	1875606..1876805	+	399	117617652	emrD	AHA_1713	-	multidrug resistance protein D
1668	 54.93	-1	1877170..1877544	-	124	117620065	-	AHA_1714	-	hypothetical protein
1669	 61.40	0	1877676..1878245	+	189	117620775	-	AHA_1715	-	YecA family protein
1670	 68.64	+1	1878429..1879646	+	405	117621208	ubiH	AHA_1716	-	2-polyprenyl-6-methoxyphenol 4-hydroxylase
1671	 69.35	+1	1879742..1880971	+	409	117618973	-	AHA_1717	-	2-octaprenyl-6-methoxyphenol hydroxylase
1672	 63.39	0	1881450..1882547	+	365	117619425	gcvT	AHA_1718	-	glycine cleavage system aminomethyltransferase T
1673	 63.08	0	1882653..1883042	+	129	117619614	gcvH	AHA_1719	-	glycine cleavage system H protein
1674	 64.41	0	1883295..1886171	+	958	117620071	gcvP	AHA_1720	-	glycine dehydrogenase
1675	 55.31	-1	1886286..1887359	-	357	117620214	-	AHA_1721	-	hypothetical protein
1676	 54.21	-1	1887466..1887762	+	98	117620666	-	AHA_1722	-	ArsR family transcriptional regulator
1677	 55.21	-1	1887834..1888217	+	127	117617788	-	AHA_1723	-	arsenic operon regulator
1678	 56.88	0	1888221..1888649	+	142	117619821	-	AHA_1724	-	arsenical resistance operon trans-acting repressor ArsD
62.23	MEAN

5.38	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.