IslandPath Analysis: Aeromonas hydrophila subsp. hydrophila ATCC 7966



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 62.23   STD DEV: 5.38
Aeromonas hydrophila subsp. hydrophila ATCC 7966, complete genome - 1..4744448
4122 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
88	 60.70	0	108073..109362	-	429	117620754	-	AHA_0097	-	ATP-dependent RNA helicase RhlB
89	 54.43	-1	109476..109802	+	108	117617736	trx	AHA_0098	-	thioredoxin
90	 59.32	0	110010..111275	+	421	117621426	rho	AHA_0099	-	transcription termination factor Rho
91	 65.54	0	111589..112389	+	266	117619367	-	AHA_0100	-	hypothetical protein
92	 64.01	0	112420..113889	+	489	117620729	-	AHA_0101	-	3-octaprenyl-4-hydroxybenzoate carboxy-lyase
93	 63.52	0	114058..114756	+	232	117619055	fre	AHA_0102	-	FMN reductase
94	 61.24	0	114886..115143	-	85	117619287	-	AHA_0103	-	hypothetical protein
95	 64.60	0	115445..117862	+	805	117618922	-	AHA_0104	-	extracellular lipase
96	 66.67	0	118002..118835	-	277	117618367	-	AHA_0105	-	GlpG protein
97	 62.96	0	118832..119155	-	107	117617882	-	AHA_0106	-	thiosulfate sulfurtransferase GlpE
98	 66.67	0	119226..119912	+	228	117619363	-	AHA_0108	-	amino acid transporter LysE
99	 68.35	+1	119909..120742	-	277	117618648	-	AHA_0107	-	AraC family transcriptional regulator
100	 64.81	0	120746..121447	-	233	117620159	-	AHA_0109	-	high-affinity branched-chain amino acid ABC transporter, ATP-binding protein LivF
101	 63.95	0	121458..122231	-	257	117619621	livG	AHA_0110	-	leucine/isoleucine/valine transporter ATP-binding subunit
102	 63.05	0	122228..123499	-	423	117621101	livM	AHA_0111	-	leucine/isoleucine/valine transporter permease subunit
103	 62.78	0	123496..124422	-	308	117617983	-	AHA_0112	-	high-affinity branched-chain amino acid transport system permeaseprotein LivH
104	 61.96	0	124487..125590	-	367	117619840	-	AHA_0113	-	Leu/Ile/Val-binding protein
105	 62.89	0	126044..127048	+	334	117619173	-	AHA_0114	-	ribose operon repressor
106	 65.00	0	127118..128437	-	439	117621038	-	AHA_0115	-	maltose-6'-phosphate glucosidase
107	 58.29	0	128440..130026	-	528	117620317	-	AHA_0116	-	pts system maltose-specific eiicb component
108	 64.55	0	130311..131018	+	235	117618008	-	AHA_0117	-	GntR family transcriptional regulator
109	 70.07	+1	131099..132625	-	508	117617564	-	AHA_0118	-	anaerobic nitric oxide reductase transcription regulator
110	 63.51	0	132796..134283	+	495	117617628	norV	AHA_0119	-	anaerobic nitric oxide reductase flavorubredoxin
111	 69.41	+1	134280..135446	+	388	117618692	norW	AHA_0120	-	nitric oxide reductase
112	 64.62	0	135498..135839	+	113	117619782	-	AHA_0121	-	tellurite resistance protein TehB
113	 69.54	+1	135961..137178	+	405	117620621	-	AHA_0122	-	iron-sulfur cluster-binding protein
114	 64.96	0	137466..138692	+	408	117620925	-	AHA_0123	-	low affinity tryptophan permease
115	 64.79	0	138783..139262	-	159	117618213	-	AHA_0124	-	phenylalanyl-tRNA synthetase beta subunit
116	 65.68	0	139376..139780	-	134	117617550	-	AHA_0125	-	hypothetical protein
117	 59.37	0	140006..140512	+	168	117619153	-	AHA_0126	-	putative kinase
118	 63.24	0	141378..143447	-	689	117618734	glyS	AHA_0127	-	glycyl-tRNA synthetase, beta subunit
119	 60.06	0	143457..144380	-	307	117618098	glyQ	AHA_0128	-	glycyl-tRNA synthetase subunit alpha
120	 61.68	0	144590..145171	+	193	117617536	-	AHA_0129	-	DNA-3-methyladenine glycosylase I
121	 64.51	0	145248..147284	-	678	117619147	-	AHA_0130	-	methyl-accepting chemotaxis protein
122	 65.91	0	147537..148193	+	218	117620195	-	AHA_0131	-	putative outer membrane lipoprotein
123	 62.07	0	148461..148808	-	115	117618741	-	AHA_0132	-	endoribonuclease L-PSP
124	 58.23	0	148830..149078	-	82	117619056	-	AHA_0133	-	hypothetical protein
125	 54.69	-1	149247..149438	+	63	117618878	-	AHA_0134	-	hypothetical protein
126	 65.54	0	149511..150749	-	412	117619451	-	AHA_0135	-	ABC-type sugar transport system, periplasmic component
127	 63.70	0	150754..152169	-	471	117620003	-	AHA_0136	-	signal transduction histidine kinase
128	 63.13	0	152251..152985	-	244	117620062	-	AHA_0137	-	GltR
129	 65.98	0	153298..154461	-	387	117621157	fadA	AHA_0138	-	3-ketoacyl-CoA thiolase
130	 62.57	0	154483..156630	-	715	117619676	fadB	AHA_0139	-	multifunctional fatty acid oxidation complex subunit alpha
131	 64.81	0	156833..158770	-	645	117618217	-	AHA_0140	-	acetoacetyl-CoA synthetase
132	 62.43	0	158961..160283	+	440	117617696	pepQ	AHA_0141	-	proline dipeptidase
133	 63.27	0	160283..160900	+	205	117620134	-	AHA_0142	-	hypothetical protein
134	 60.63	0	160937..162394	+	485	117618503	trkH	AHA_0143	-	Trk system potassium uptake protein TrkH
135	 54.21	-1	162333..162926	+	197	117617634	-	AHA_0144	-	protoporphyrinogen oxidase
136	 63.56	0	168638..171214	-	858	117618048	-	AHA_0149	-	acyl-CoA synthetase
137	 56.77	-1	171287..171478	-	63	117618515	-	AHA_0150	-	hypothetical protein
138	 63.34	0	171648..172520	+	290	117619975	-	AHA_0152	-	hypothetical protein
139	 67.00	0	172509..173402	-	297	117617910	ilvY	AHA_0151	-	DNA-binding transcriptional regulator IlvY
140	 61.67	0	173624..175105	+	493	117620403	ilvC	AHA_0153	-	ketol-acid reductoisomerase
141	 58.73	0	175254..176903	-	549	117620862	pgi	AHA_0154	-	glucose-6-phosphate isomerase
142	 62.96	0	177320..177508	+	62	117620249	-	AHA_0155	-	phage lysis protein Y, holin, putative
143	 62.49	0	177635..178471	-	278	117619377	-	AHA_0156	-	small-conductance mechanosensitive channel
144	 61.14	0	178658..179254	-	198	117618804	slmA	AHA_0157	-	nucleoid occlusion protein
145	 61.87	0	179324..179782	-	152	117620912	-	AHA_0158	-	deoxyuridine 5'-triphosphate nucleotidohydrolase
146	 67.00	0	179823..181025	-	400	117618333	coaBC	AHA_0159	-	phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase
147	 61.78	0	181173..181847	+	224	117619575	radC	AHA_0160	-	DNA repair protein RadC
148	 53.59	-1	181984..182220	+	78	117621560	rpmB	AHA_0161	-	ribosomal protein L28
149	 45.24	-2	182232..182399	+	55	117617824	rpmG	AHA_0162	-	50S ribosomal protein L33
150	 66.45	0	182493..182948	+	151	117619318	-	AHA_0163	-	hypothetical protein
151	 66.67	0	182978..183790	+	270	117620578	mutM	AHA_0164	-	formamidopyrimidine-DNA glycosylase
152	 65.42	0	183969..184850	+	293	117620448	-	AHA_0165	-	hypothetical protein
153	 63.35	0	184904..185386	-	160	117620670	coaD	AHA_0166	-	phosphopantetheine adenylyltransferase
154	 66.00	0	185610..186653	+	347	117621364	-	AHA_0167	-	heptosyltransferase
155	 64.77	0	186723..187511	-	262	117617474	-	AHA_0168	-	glycosyl transferase, group 2 family protein
156	 67.03	0	187753..188868	+	371	117618211	rfaF	AHA_0169	-	lipopolysaccharide heptosyltransferase II
157	 69.91	+1	188870..190135	+	421	117620437	waaA	AHA_0170	-	3-deoxy-D-manno-octulosonic-acid transferase
158	 63.48	0	190206..191462	-	418	117619139	ulaA	AHA_0171	-	ascorbate-specific PTS system enzyme IIC
159	 62.04	0	191523..191846	-	107	117618019	-	AHA_0172	-	PTS sysytem, mannitol-specific enzyme II, B component
160	 65.99	0	191843..192286	-	147	117620977	-	AHA_0173	-	ascorbate-specific phosphotransferase enzyme IIA component
161	 66.96	0	192539..193561	+	340	117619234	-	AHA_0174	-	HTH-type transcriptional regulator GntR
162	 69.62	+1	193591..194571	+	326	117619701	-	AHA_0175	-	quinone oxidoreductase YhdH/YhfP family
163	 55.33	-1	194616..194765	+	49	117618104	-	AHA_0176	-	hypothetical protein
164	 64.04	0	194898..195239	+	113	117618616	-	AHA_0177	-	hypothetical protein
165	 54.79	-1	195253..195471	-	72	117620661	-	AHA_0178	-	hypothetical protein
166	 58.85	0	195529..195963	-	144	117620220	fliL-1	AHA_0179	-	flagellar basal body-associated protein FliL
167	 65.18	0	196109..196645	+	178	117619282	-	AHA_0180	-	chorismate--pyruvate lyase
168	 64.70	0	196642..197505	+	287	117618850	ubiA	AHA_0181	-	4-hydroxybenzoate octaprenyltransferase
169	 64.27	0	197570..199993	-	807	117618318	plsB	AHA_0182	-	glycerol-3-phosphate acyltransferase
170	 63.14	0	200198..200821	+	207	117617886	lexA	AHA_0183	-	LexA repressor
171	 63.54	0	201261..201548	+	95	117621550	-	AHA_0184	-	hypothetical protein
172	 61.67	0	201552..201671	-	39	117619863	-	AHA_0185	-	hypothetical protein
173	 60.70	0	201710..202396	+	228	117620111	-	AHA_0186	-	SCO1/SenC family protein
174	 68.50	+1	202386..203804	+	472	117618927	-	AHA_0187	-	DNA-damage-inducible protein F
175	 64.10	0	203833..204339	-	168	117618548	-	AHA_0188	-	RNA methyltransferase
176	 64.38	0	204372..205727	-	451	117619112	cpxA	AHA_0189	-	sensor histidine kinase CpxA
177	 64.51	0	205724..206419	-	231	117617627	cpxR	AHA_0190	-	transcriptional regulatory protein CpxR
178	 62.28	0	206506..207417	+	303	117618200	fieF	AHA_0191	-	cation-efflux pump FieF
179	 64.62	0	207426..208205	+	259	117620805	cysE	AHA_0192	-	serine acetyltransferase
180	 67.84	+1	208227..209507	+	426	117621390	-	AHA_0193	-	hypothetical protein
181	 55.14	-1	209553..209951	+	132	117619981	-	AHA_0194	-	transcriptional regulator
182	 62.83	0	210025..210675	-	216	117620568	-	AHA_0195	-	isoprenoid biosynthesis protein
183	 62.53	0	211076..213829	+	917	117618452	polA	AHA_0196	-	DNA polymerase I
184	 60.56	0	213909..214448	-	179	117617861	-	AHA_0197	-	carbonic anhydrase
185	 60.35	0	220520..221485	+	321	117617638	-	AHA_0204	-	DNA-binding transcriptional repressor EbgR
186	 61.89	0	221807..224881	+	1024	117618876	ebgA	AHA_0205	-	cryptic beta-D-galactosidase subunit alpha
187	 60.96	0	224878..225333	+	151	162139474	-	AHA_0206	-	evolved beta-D-galactosidase, beta subunit; cryptic gene
62.23	MEAN

5.38	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by th