IslandPath Analysis: Aeromonas hydrophila subsp. hydrophila ATCC 7966



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 62.23   STD DEV: 5.38
Aeromonas hydrophila subsp. hydrophila ATCC 7966, complete genome - 1..4744448
4122 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
62	 62.62	0	73217..74872	+	551	117619897	-	AHA_0066	-	sensor histidine kinase
63	 60.25	0	75002..75733	+	243	117620033	-	AHA_0067	-	response regulator receiver domain-containing protein
64	 63.78	0	75855..77033	+	392	117620100	-	AHA_0068	-	inner membrane protein YhjX
65	 69.96	+1	77107..78231	-	374	117619549	purK	AHA_0069	-	phosphoribosylaminoimidazole carboxylase ATPase subunit
66	 69.61	+1	78228..78737	-	169	117619504	purE-1	AHA_0070	-	phosphoribosylaminoimidazole carboxylase, catalytic subunit
67	 63.70	0	78800..79102	-	100	117618928	-	AHA_0071	-	hypothetical protein
68	 63.13	0	79107..80180	-	357	117617880	-	AHA_0072	-	sodium bicarbonate cotransporter
69	 67.00	0	80145..81047	+	300	117621439	-	AHA_0073	-	regulatory protein, LysR:LysR, substrate-binding
70	 60.57	0	81312..83147	+	611	117621264	-	AHA_0074	-	vitamin B12 transporter BtuB
71	 60.75	0	83265..84059	+	264	117620688	murI	AHA_0075	-	glutamate racemase
72	 55.69	-1	84078..84569	-	163	117620589	-	AHA_0076	-	RNA-binding protein
73	 60.58	0	90960..92225	+	421	117620035	codA	AHA_0082	-	cytosine deaminase
74	 58.75	0	92274..92690	+	138	117619448	crcB	AHA_0083	-	CrcB protein
75	 58.70	0	92756..93508	+	250	117617949	-	AHA_0084	-	ubiquinone/menaquinone biosynthesis methyltransferase UbiE
76	 64.04	0	93517..94125	+	202	117620541	-	AHA_0085	-	hypothetical protein
77	 63.44	0	94125..95765	+	546	117620525	ubiB	AHA_0086	-	putative ubiquinone biosynthesis protein UbiB
78	 56.22	-1	95806..96054	+	82	117621220	tatA	AHA_0087	-	twin argininte translocase protein A
79	 61.49	0	96058..96501	+	147	117619738	tatB	AHA_0088	-	twin arginine-targeting protein translocase TatB
80	 60.45	0	96498..97253	+	251	117620328	tatC	AHA_0089	-	twin arginine-targeting protein translocase TatC
81	 67.43	0	97365..98150	+	261	117620562	-	AHA_0090	-	deoxyribonuclease TatD
82	 63.53	0	98154..99173	+	339	117620960	hemB	AHA_0091	-	delta-aminolevulinic acid dehydratase
83	 64.66	0	99396..101438	+	680	117619647	prlC	AHA_0092	-	oligopeptidase A
84	 64.11	0	101643..104186	+	847	117617732	-	AHA_0093	-	MorA
85	 68.81	+1	104281..105027	+	248	117617673	-	AHA_0094	-	hypothetical protein
86	 64.44	0	105382..106371	-	329	117618117	-	AHA_0095	-	hypothetical protein
87	 65.19	0	106568..108058	-	496	117621186	-	AHA_0096	-	guanosine-5'-triphosphate,3'-diphosphate pyrophosphatase
88	 60.70	0	108073..109362	-	429	117620754	-	AHA_0097	-	ATP-dependent RNA helicase RhlB
89	 54.43	-1	109476..109802	+	108	117617736	trx	AHA_0098	-	thioredoxin
90	 59.32	0	110010..111275	+	421	117621426	rho	AHA_0099	-	transcription termination factor Rho
91	 65.54	0	111589..112389	+	266	117619367	-	AHA_0100	-	hypothetical protein
92	 64.01	0	112420..113889	+	489	117620729	-	AHA_0101	-	3-octaprenyl-4-hydroxybenzoate carboxy-lyase
93	 63.52	0	114058..114756	+	232	117619055	fre	AHA_0102	-	FMN reductase
94	 61.24	0	114886..115143	-	85	117619287	-	AHA_0103	-	hypothetical protein
95	 64.60	0	115445..117862	+	805	117618922	-	AHA_0104	-	extracellular lipase
96	 66.67	0	118002..118835	-	277	117618367	-	AHA_0105	-	GlpG protein
97	 62.96	0	118832..119155	-	107	117617882	-	AHA_0106	-	thiosulfate sulfurtransferase GlpE
98	 66.67	0	119226..119912	+	228	117619363	-	AHA_0108	-	amino acid transporter LysE
99	 68.35	+1	119909..120742	-	277	117618648	-	AHA_0107	-	AraC family transcriptional regulator
100	 64.81	0	120746..121447	-	233	117620159	-	AHA_0109	-	high-affinity branched-chain amino acid ABC transporter, ATP-binding protein LivF
101	 63.95	0	121458..122231	-	257	117619621	livG	AHA_0110	-	leucine/isoleucine/valine transporter ATP-binding subunit
102	 63.05	0	122228..123499	-	423	117621101	livM	AHA_0111	-	leucine/isoleucine/valine transporter permease subunit
103	 62.78	0	123496..124422	-	308	117617983	-	AHA_0112	-	high-affinity branched-chain amino acid transport system permeaseprotein LivH
104	 61.96	0	124487..125590	-	367	117619840	-	AHA_0113	-	Leu/Ile/Val-binding protein
105	 62.89	0	126044..127048	+	334	117619173	-	AHA_0114	-	ribose operon repressor
106	 65.00	0	127118..128437	-	439	117621038	-	AHA_0115	-	maltose-6'-phosphate glucosidase
107	 58.29	0	128440..130026	-	528	117620317	-	AHA_0116	-	pts system maltose-specific eiicb component
108	 64.55	0	130311..131018	+	235	117618008	-	AHA_0117	-	GntR family transcriptional regulator
109	 70.07	+1	131099..132625	-	508	117617564	-	AHA_0118	-	anaerobic nitric oxide reductase transcription regulator
110	 63.51	0	132796..134283	+	495	117617628	norV	AHA_0119	-	anaerobic nitric oxide reductase flavorubredoxin
111	 69.41	+1	134280..135446	+	388	117618692	norW	AHA_0120	-	nitric oxide reductase
112	 64.62	0	135498..135839	+	113	117619782	-	AHA_0121	-	tellurite resistance protein TehB
113	 69.54	+1	135961..137178	+	405	117620621	-	AHA_0122	-	iron-sulfur cluster-binding protein
114	 64.96	0	137466..138692	+	408	117620925	-	AHA_0123	-	low affinity tryptophan permease
115	 64.79	0	138783..139262	-	159	117618213	-	AHA_0124	-	phenylalanyl-tRNA synthetase beta subunit
116	 65.68	0	139376..139780	-	134	117617550	-	AHA_0125	-	hypothetical protein
117	 59.37	0	140006..140512	+	168	117619153	-	AHA_0126	-	putative kinase
118	 63.24	0	141378..143447	-	689	117618734	glyS	AHA_0127	-	glycyl-tRNA synthetase, beta subunit
119	 60.06	0	143457..144380	-	307	117618098	glyQ	AHA_0128	-	glycyl-tRNA synthetase subunit alpha
120	 61.68	0	144590..145171	+	193	117617536	-	AHA_0129	-	DNA-3-methyladenine glycosylase I
121	 64.51	0	145248..147284	-	678	117619147	-	AHA_0130	-	methyl-accepting chemotaxis protein
122	 65.91	0	147537..148193	+	218	117620195	-	AHA_0131	-	putative outer membrane lipoprotein
123	 62.07	0	148461..148808	-	115	117618741	-	AHA_0132	-	endoribonuclease L-PSP
124	 58.23	0	148830..149078	-	82	117619056	-	AHA_0133	-	hypothetical protein
125	 54.69	-1	149247..149438	+	63	117618878	-	AHA_0134	-	hypothetical protein
126	 65.54	0	149511..150749	-	412	117619451	-	AHA_0135	-	ABC-type sugar transport system, periplasmic component
127	 63.70	0	150754..152169	-	471	117620003	-	AHA_0136	-	signal transduction histidine kinase
128	 63.13	0	152251..152985	-	244	117620062	-	AHA_0137	-	GltR
129	 65.98	0	153298..154461	-	387	117621157	fadA	AHA_0138	-	3-ketoacyl-CoA thiolase
130	 62.57	0	154483..156630	-	715	117619676	fadB	AHA_0139	-	multifunctional fatty acid oxidation complex subunit alpha
131	 64.81	0	156833..158770	-	645	117618217	-	AHA_0140	-	acetoacetyl-CoA synthetase
132	 62.43	0	158961..160283	+	440	117617696	pepQ	AHA_0141	-	proline dipeptidase
133	 63.27	0	160283..160900	+	205	117620134	-	AHA_0142	-	hypothetical protein
134	 60.63	0	160937..162394	+	485	117618503	trkH	AHA_0143	-	Trk system potassium uptake protein TrkH
135	 54.21	-1	162333..162926	+	197	117617634	-	AHA_0144	-	protoporphyrinogen oxidase
136	 63.56	0	168638..171214	-	858	117618048	-	AHA_0149	-	acyl-CoA synthetase
137	 56.77	-1	171287..171478	-	63	117618515	-	AHA_0150	-	hypothetical protein
138	 63.34	0	171648..172520	+	290	117619975	-	AHA_0152	-	hypothetical protein
139	 67.00	0	172509..173402	-	297	117617910	ilvY	AHA_0151	-	DNA-binding transcriptional regulator IlvY
140	 61.67	0	173624..175105	+	493	117620403	ilvC	AHA_0153	-	ketol-acid reductoisomerase
141	 58.73	0	175254..176903	-	549	117620862	pgi	AHA_0154	-	glucose-6-phosphate isomerase
142	 62.96	0	177320..177508	+	62	117620249	-	AHA_0155	-	phage lysis protein Y, holin, putative
143	 62.49	0	177635..178471	-	278	117619377	-	AHA_0156	-	small-conductance mechanosensitive channel
144	 61.14	0	178658..179254	-	198	117618804	slmA	AHA_0157	-	nucleoid occlusion protein
145	 61.87	0	179324..179782	-	152	117620912	-	AHA_0158	-	deoxyuridine 5'-triphosphate nucleotidohydrolase
146	 67.00	0	179823..181025	-	400	117618333	coaBC	AHA_0159	-	phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase
147	 61.78	0	181173..181847	+	224	117619575	radC	AHA_0160	-	DNA repair protein RadC
148	 53.59	-1	181984..182220	+	78	117621560	rpmB	AHA_0161	-	ribosomal protein L28
149	 45.24	-2	182232..182399	+	55	117617824	rpmG	AHA_0162	-	50S ribosomal protein L33
150	 66.45	0	182493..182948	+	151	117619318	-	AHA_0163	-	hypothetical protein
151	 66.67	0	182978..183790	+	270	117620578	mutM	AHA_0164	-	formamidopyrimidine-DNA glycosylase
152	 65.42	0	183969..184850	+	293	117620448	-	AHA_0165	-	hypothetical protein
153	 63.35	0	184904..185386	-	160	117620670	coaD	AHA_0166	-	phosphopantetheine adenylyltransferase
154	 66.00	0	185610..186653	+	347	117621364	-	AHA_0167	-	heptosyltransferase
155	 64.77	0	186723..187511	-	262	117617474	-	AHA_0168	-	glycosyl transferase, group 2 family protein
156	 67.03	0	187753..188868	+	371	117618211	rfaF	AHA_0169	-	lipopolysaccharide heptosyltransferase II
157	 69.91	+1	188870..190135	+	421	117620437	waaA	AHA_0170	-	3-deoxy-D-manno-octulosonic-acid transferase
158	 63.48	0	190206..191462	-	418	117619139	ulaA	AHA_0171	-	ascorbate-specific PTS system enzyme IIC
159	 62.04	0	191523..191846	-	107	117618019	-	AHA_0172	-	PTS sysytem, mannitol-specific enzyme II, B component
160	 65.99	0	191843..192286	-	147	117620977	-	AHA_0173	-	ascorbate-specific phosphotransferase enzyme IIA component
161	 66.96	0	192539..193561	+	340	117619234	-	AHA_0174	-	HTH-type transcriptional regulator GntR
62.23	MEAN

5.38	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.