IslandPathversion 1.0

IslandPath Analysis: Aeromonas hydrophila subsp. hydrophila ATCC 7966



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 62.23 STD DEV: 5.38
Aeromonas hydrophila subsp. hydrophila ATCC 7966, complete genome - 1..4744448
4122 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1040	 58.38	0	1180233..1180763	-	176	117620845	-	AHA_1079	-	putative DNA repair protein RadC
1041	 57.98	0	1181510..1181935	-	141	117621319	-	AHA_1080	-	hypothetical protein
1042	 58.05	0	1181955..1182302	-	115	117617655	-	AHA_1081	-	hypothetical protein
1043	 55.78	-1	1182386..1182835	-	149	117618101	-	AHA_1082	-	hypothetical protein
1044	 52.78	-1	1182848..1183171	-	107	117619485	-	AHA_1083	-	hypothetical protein
1045	 58.97	0	1183418..1183768	+	116	117619251	-	AHA_1084	-	helix-turn-helix domain-containing protein
1046	 60.36	0	1183780..1184619	-	279	117621420	-	AHA_1085	-	hypothetical protein
1047	 60.91	0	1184757..1185746	-	329	117619943	-	AHA_1086	-	hypothetical protein
1048	 58.89	0	1185841..1186791	-	316	117618482	-	AHA_1087	-	hypothetical protein
1049	 64.33	0	1187154..1188308	-	384	117617955	-	AHA_1089	-	hypothetical protein
1050	 59.86	0	1188389..1189123	+	244	117617633	-	AHA_1090	-	hypothetical protein
1051	 62.50	0	1189139..1189570	+	143	117618769	-	AHA_1091	-	hypothetical protein
1052	 64.11	0	1189671..1190843	-	390	117618530	pheA	AHA_1092	-	chorismate mutase/prephenate dehydratase
1053	 45.83	-2	1190965..1191012	-	15	117618987	-	AHA_1093	-	Phe leader peptide
1054	 63.83	0	1191186..1191785	+	199	117620258	-	AHA_1094	-	hydrolase
1055	 53.05	-1	1191811..1192089	+	92	117619643	-	AHA_1095	-	hypothetical protein
1056	 63.46	0	1192135..1193007	+	290	117621478	-	AHA_1096	-	hypothetical protein
1057	 67.03	0	1193103..1193651	+	182	117620941	-	AHA_1097	-	hypothetical protein
1058	 59.21	0	1193836..1194465	+	209	117618324	-	AHA_1098	-	hypothetical protein
1059	 63.39	0	1194638..1195582	+	314	117617727	-	AHA_1099	-	hypothetical protein
1060	 69.03	+1	1195646..1196533	+	295	117620327	-	AHA_1100	-	MerR family transcriptional regulator
1061	 65.68	0	1196530..1197951	+	473	117618175	phrB	AHA_1101	-	deoxyribodipyrimidine photolyase
1062	 64.57	0	1197953..1198381	+	142	117617595	-	AHA_1102	-	putative transcriptional regulator
1063	 66.67	0	1198378..1199115	+	245	117621424	-	AHA_1103	-	short chain dehydrogenase/reductase family oxidoreductase
1064	 64.60	0	1199112..1200371	+	419	117620782	-	AHA_1104	-	amino-oxidase
1065	 64.37	0	1200368..1201150	+	260	117618378	-	AHA_1105	-	plasmid partition ParA protein
1066	 64.20	0	1201150..1202406	+	418	117620857	-	AHA_1106	-	cyclopropane-fatty-acyl-phospholipid synthase
1067	 56.16	-1	1202885..1203103	+	72	117619494	-	AHA_1107	-	hypothetical protein
1068	 66.67	0	1203120..1203611	+	163	117617951	-	AHA_1108	-	hypothetical protein
1069	 61.47	0	1203611..1204168	+	185	117620145	-	AHA_1109	-	putative lipoprotein
1070	 58.12	0	1204293..1204760	+	155	117618996	-	AHA_1110	-	DPS family protein
1071	 62.55	0	1205088..1206737	+	549	117618309	-	AHA_1111	-	hydroxylamine reductase
1072	 65.98	0	1206852..1207871	+	339	117617743	-	AHA_1112	-	iron-sulfur cluster-binding protein
1073	 62.18	0	1207957..1208982	+	341	117619556	galE-1	AHA_1113	-	UDP-glucose 4-epimerase
1074	 59.87	0	1209157..1209906	-	249	117621284	-	AHA_1114	-	outer membrane protein
1075	 42.71	-2	1209933..1210028	+	31	117618905	-	AHA_1115	-	hypothetical protein
1076	 58.62	0	1210730..1211524	+	264	117620077	-	AHA_1117	-	transcriptional activator protein AhyR/asaR
1077	 57.23	0	1211755..1212273	+	172	117617709	-	AHA_1118	-	HcpA-like protein
1078	 60.09	0	1212752..1215535	+	927	117619461	-	AHA_1119	-	Rhs element Vgr protein
1079	 55.43	-1	1215532..1216332	+	266	117621298	-	AHA_1120	-	type III secretion protein
1080	 52.89	-1	1216332..1218284	+	650	117617754	-	AHA_1121	-	hypothetical protein
1081	 50.64	-2	1218284..1218982	+	232	117620990	-	AHA_1122	-	hypothetical protein
1082	 48.58	-2	1219157..1219858	+	233	117621493	-	AHA_1123	-	hypothetical protein
1083	 67.23	0	1219986..1220870	-	294	117621187	-	AHA_1124	-	LysR family transcriptional regulator
1084	 65.51	0	1220980..1221759	+	259	117619966	budA	AHA_1125	-	alpha-acetolactate decarboxylase
1085	 66.73	0	1221787..1223457	+	556	117618354	alsS	AHA_1126	-	acetolactate synthase
1086	 71.16	+1	1223551..1224129	-	192	117620872	-	AHA_1127	-	4-methyl-5(B-hydroxyethyl)-thiazole monophosphate biosynthesis enzyme
1087	 65.82	0	1224163..1225110	-	315	117618856	panE	AHA_1128	-	2-dehydropantoate 2-reductase
1088	 56.73	-1	1225468..1225950	+	160	117619299	-	AHA_1129	-	nucleotide-binding protein
1089	 54.33	-1	1226053..1226895	-	280	117620259	-	AHA_1130	-	outer membrane protein
1090	 62.75	0	1227052..1228431	-	459	117618583	-	AHA_1131	-	muropeptide permease AmpG
1091	 60.87	0	1228962..1229513	-	183	117619979	-	AHA_1132	-	peptidyl-prolyl cis-trans isomerase B
1092	 61.26	0	1229529..1230101	-	190	117619442	-	AHA_1133	-	hypothetical protein
1093	 63.52	0	1230126..1231268	-	380	117617753	-	AHA_1134	-	putative ribosomal RNA small subunit methyltransferase D (rRNA (guanine-N(2)-)-methyltransferase)
1094	 62.78	0	1231475..1231783	+	102	117618337	-	AHA_1135	-	BolA protein
1095	 59.52	0	1232225..1233568	+	447	117620378	nqrA	AHA_1136	-	Na(+)-translocating NADH-quinone reductase subunit A
1096	 60.98	0	1233572..1234801	+	409	117621223	nqrB	AHA_1137	-	Na(+)-translocating NADH-quinone reductase subunit B
1097	 60.58	0	1234791..1235579	+	262	117619697	nqrC	AHA_1138	-	Na(+)-translocating NADH-quinone reductase subunit C
1098	 60.35	0	1235572..1236204	+	210	117620038	nqrD	AHA_1139	-	NADH:ubiquinone oxidoreductase, Na(+)-translocating, D subunit
1099	 57.62	0	1236208..1236804	+	198	117618100	nqrE-1	AHA_1140	-	Na(+)-translocating NADH-quinone reductase subunit E
1100	 58.42	0	1236822..1238045	+	407	117618547	nqrF	AHA_1141	-	Na(+)-translocating NADH-quinone reductase subunit F
1101	 61.29	0	1238049..1239089	+	346	117621535	-	AHA_1142	-	thiamine biosynthesis lipoprotein ApbE
1102	 54.67	-1	1239101..1239325	+	74	117620992	-	AHA_1143	-	hypothetical protein
1103	 62.91	0	1239413..1239625	-	70	117619812	-	AHA_1144	-	hypothetical protein
1104	 66.57	0	1239758..1240810	+	350	117618729	dinB	AHA_1145	-	DNA polymerase IV
1105	 64.24	0	1240879..1243020	+	713	117620938	-	AHA_1146	-	methyl-accepting chemotaxis protein
1106	 62.98	0	1243304..1244224	+	306	117621405	gcvA	AHA_1147	-	DNA-binding transcriptional activator GcvA
1107	 63.38	0	1244217..1244855	+	212	117617575	-	AHA_1148	-	esterase/lipase/thioesterase family protein
1108	 60.98	0	1244888..1245274	+	128	117618639	-	AHA_1149	-	hypothetical protein
1109	 60.27	0	1245267..1246361	+	364	117619180	-	AHA_1150	-	putative RNA 2'-O-ribose methyltransferase
1110	 58.96	0	1246432..1246872	-	146	117618664	-	AHA_1151	-	hypothetical protein
1111	 62.10	0	1246993..1248000	-	335	117621076	-	AHA_1152	-	isocitrate dehydrogenase
1112	 65.01	0	1248147..1249052	-	301	117618346	xni	AHA_1153	-	exodeoxyribonuclease IX
1113	 63.42	0	1249081..1250436	-	451	117620953	-	AHA_1154	-	lysine decarboxylase family protein
1114	 62.41	0	1250587..1252206	-	539	117618806	-	AHA_1155	-	GGDEF domain-containing protein
1115	 62.04	0	1252297..1254567	-	756	117619372	-	AHA_1156	-	TPR repeat-containing protein
1116	 64.36	0	1254702..1255610	-	302	117619568	queF	AHA_1157	-	7-cyano-7-deazaguanine reductase
1117	 65.03	0	1255708..1256256	+	182	117620266	-	AHA_1158	-	Syd protein
1118	 64.12	0	1256326..1257111	-	261	117619901	-	AHA_1159	-	Zn-ribbon-containing protein
1119	 64.98	0	1257500..1257736	-	78	117619596	-	AHA_1160	-	hypothetical protein
1120	 63.33	0	1257794..1258093	-	99	117620879	-	AHA_1161	-	hypothetical protein
1121	 65.31	0	1258163..1259191	-	342	117617457	-	AHA_1162	-	hypothetical protein
1122	 61.61	0	1259455..1259790	+	111	117619606	-	AHA_1163	-	hypothetical protein
1123	 63.05	0	1259787..1260560	+	257	117619994	-	AHA_1164	-	RNA pseudouridine synthase family protein
1124	 62.13	0	1260637..1261077	+	146	117620479	-	AHA_1165	-	protein MioC
1125	 53.42	-1	1261489..1262922	+	477	117620897	lamB	AHA_1166	-	maltoporin
1126	 58.56	0	1262999..1263985	+	328	117621347	-	AHA_1167	-	maltose operon periplasmic protein
1127	 59.33	0	1264417..1265847	+	476	117617692	ptsG	AHA_1168	-	glucose-specific PTS system IIBC components
1128	 54.17	-1	1266028..1266411	-	127	117618126	-	AHA_1169	-	hypothetical protein
1129	 63.04	0	1266540..1267367	-	275	117619705	dapD	AHA_1170	-	2,3,4,5-tetrahydropyridine-2-carboxylate N-succinyltransferase
1130	 64.86	0	1267534..1270188	-	884	117618353	glnD	AHA_1171	-	protein-P-II uridylyltransferase
1131	 60.46	0	1270286..1271074	-	262	117617959	map	AHA_1172	-	methionine aminopeptidase, type I
1132	 53.64	-1	1271434..1272162	+	242	117621095	rpsB	AHA_1173	-	ribosomal protein S2
1133	 56.01	-1	1272267..1273148	+	293	117620642	tsf	AHA_1174	-	elongation factor Ts
1134	 57.14	0	1273220..1273954	+	244	117620238	pyrH	AHA_1175	-	uridylate kinase
1135	 58.42	0	1274049..1274606	+	185	117619336	frr	AHA_1176	-	ribosome recycling factor
1136	 61.00	0	1274679..1275455	+	258	117618835	uppS	AHA_1177	-	undecaprenyl diphosphate synthase
1137	 61.19	0	1275482..1276339	+	285	117619293	cdsA	AHA_1178	-	phosphatidate cytidylyltransferase
1138	 65.41	0	1276403..1277596	+	397	117618840	dxr	AHA_1179	-	1-deoxy-D-xylulose 5-phosphate reductoisomerase
1139	 62.82	0	1277679..1279031	+	450	117618480	ecfE	AHA_1180	-	peptidase EcfE
62.23	MEAN

5.38	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.