IslandPathversion 1.0

IslandPath Analysis: Aeromonas hydrophila subsp. hydrophila ATCC 7966



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 62.23 STD DEV: 5.38
Aeromonas hydrophila subsp. hydrophila ATCC 7966, complete genome - 1..4744448
4122 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
975	 63.74	0	1091535..1092389	-	284	117619732	-	AHA_1010	-	import inner membrane translocase, subunit Tim44
976	 56.86	0	1092570..1092671	+	33	117619069	-	AHA_1011	-	hypothetical protein
977	 61.86	0	1092822..1094216	+	464	117618615	dnaB	AHA_1012	-	replicative DNA helicase
978	 59.14	0	1094283..1094375	+	30	117618939	-	AHA_1013	-	hypothetical protein
979	 56.99	0	1094442..1094534	+	30	117618451	-	AHA_1014	-	hypothetical protein
980	 65.74	0	1094685..1095758	+	357	117617805	alr-1	AHA_1015	-	alanine racemase
981	 57.83	0	1095872..1096120	-	82	117621207	-	AHA_1016	-	putative ferredoxin
982	 61.23	0	1096122..1097483	-	453	117618793	yegQ	AHA_1017	-	U32 family peptidase
983	 60.03	0	1097716..1098453	-	245	117619393	-	AHA_1018	-	EAL domain-containing protein
984	 45.09	-2	1098706..1099428	+	240	117619774	-	AHA_1019	-	hypothetical protein
985	 58.13	0	1099458..1099937	+	159	117620486	-	AHA_1020	-	adhesin major subunit pilin
986	 57.88	0	1100017..1102452	+	811	117621204	-	AHA_1021	-	hypothetical protein
987	 43.87	-2	1102472..1103629	+	385	117617548	-	AHA_1022	-	hypothetical protein
988	 46.79	-2	1103654..1104292	-	212	117617726	-	AHA_1023	-	LuxR family DNA-binding response regulator
989	 54.45	-1	1104414..1107842	+	1142	117618906	-	AHA_1025	-	response regulator/sensor histidine kinase
990	 62.90	0	1108869..1110116	+	415	117620393	-	AHA_1029	-	cysteine desulfurase family protein
991	 64.12	0	1110170..1111231	-	353	117620959	cheB-1	AHA_1030	-	chemotaxis-specific methylesterase
992	 54.35	-1	1111242..1111712	-	156	117621563	-	AHA_1031	-	chemoreceptor glutamine deamidase CheD
993	 56.59	-1	1111723..1112526	-	267	117617480	cheR-1	AHA_1032	-	CheR methyltransferase SAM binding domain-containing protein
994	 60.03	0	1112583..1114751	-	722	117618911	-	AHA_1033	-	methyl-accepting chemotaxis protein
995	 56.02	-1	1114822..1115394	-	190	117618640	cheW-1	AHA_1034	-	chemotaxis protein CheW
996	 59.91	0	1115407..1117329	-	640	117619052	-	AHA_1035	-	methyl-accepting chemotaxis protein
997	 60.84	0	1117345..1119558	-	737	117620351	cheA-1	AHA_1036	-	chemotaxis protein CheA
998	 61.16	0	1119585..1119911	-	108	117620668	rsbV	AHA_1037	-	anti-sigma-B factor antagonist
999	 59.08	0	1119926..1120294	-	122	117621529	-	AHA_1038	-	chemotaxis protein CheY
1000	 62.14	0	1120304..1121518	-	404	117617856	-	AHA_1039	-	methyl-accepting chemotaxis protein, putative
1001	 65.29	0	1121822..1122910	-	362	117617513	-	AHA_1040	-	3-oxoacyl-(acyl carrier protein) synthase III
1002	 67.52	0	1123113..1124054	+	313	117617990	-	AHA_1041	-	LysR family transcriptional regulator
1003	 62.39	0	1124090..1124791	+	233	117619122	-	AHA_1042	-	amino acid transporter LysE
1004	 61.88	0	1124894..1126753	+	619	117619679	-	AHA_1043	-	U32 family peptidase
1005	 65.61	0	1126842..1127504	+	220	117620257	-	AHA_1044	-	hypothetical protein
1006	 65.20	0	1127520..1127996	-	158	117620809	-	AHA_1045	-	methylated-DNA--protein-cysteine methyltransferase
1007	 68.97	+1	1127993..1129558	-	521	117617794	-	AHA_1046	-	helix-turn-helix, AraC type:HhH-GPD:Ada, metal-binding:AlkA, N-terminal
1008	 66.42	0	1129768..1130169	+	133	117618305	-	AHA_1047	-	hypothetical protein
1009	 66.35	0	1130239..1131813	-	524	117618915	-	AHA_1048	-	thermostable carboxypeptidase 1
1010	 65.29	0	1131851..1132432	-	193	117619007	-	AHA_1049	-	Smr domain-containing protein
1011	 49.46	-2	1132586..1132771	-	61	117618263	-	AHA_1050	-	hypothetical protein
1012	 66.11	0	1132904..1133797	-	297	117617790	-	AHA_1051	-	GumN protein
1013	 69.08	+1	1134385..1135212	-	275	117620201	-	AHA_1052	-	short-chain dehydrogenase/reductase
1014	 59.06	0	1135331..1136776	-	481	117619530	-	AHA_1053	-	putative outermembrane porin
1015	 68.47	+1	1137283..1139220	-	645	117618935	-	AHA_1054	-	methyl-accepting chemotaxis protein
1016	 69.01	+1	1139338..1140234	-	298	117618972	-	AHA_1055	-	hypothetical protein
1017	 65.34	0	1140329..1141831	-	500	117618340	-	AHA_1056	-	GntP
1018	 66.35	0	1141828..1142772	-	314	117617764	-	AHA_1057	-	NAD-dependent epimerase/dehydratase:Short-chain dehydrogenase/reductase SDR:3-beta hydroxysteroid dehydrogenase/isomerase:dTDP-4-dehydrorhamnose reductase
1019	 65.25	0	1142808..1143581	-	257	117618816	-	AHA_1058	-	AP endonuclease
1020	 63.98	0	1143578..1144210	-	210	117620657	-	AHA_1059	-	putative aldolase
1021	 67.23	0	1144203..1145453	-	416	117617878	-	AHA_1060	-	YgbK domain-containing protein
1022	 68.21	+1	1145450..1146358	-	302	117621054	-	AHA_1061	-	6-phosphogluconate dehydrogenase
1023	 61.74	0	1146614..1147405	+	263	117620653	-	AHA_1062	-	DeoR family transcriptional regulator
1024	 57.73	0	1147784..1150480	-	898	117620364	-	AHA_1063	-	hypothetical protein
1025	 57.00	0	1151726..1154476	+	916	117619710	-	AHA_1064	-	invasin family protein
1026	 54.56	-1	1154664..1155332	+	222	117617869	-	AHA_1065	-	hypothetical protein
1027	 54.54	-1	1155644..1157251	+	535	117619507	-	AHA_1066	-	intimin/invasin family protein
1028	 38.15	-2	1157771..1158517	+	248	117619415	-	AHA_1067	-	hypothetical protein
1029	 36.04	-2	1158514..1160730	+	738	117621295	-	AHA_1068	-	sensory box/GGDEF family protein
1030	 35.28	-2	1161152..1161820	-	222	117618691	-	AHA_1069	-	transcriptional regulator
1031	 34.01	-2	1162913..1163206	+	97	117620015	-	AHA_1070	-	transcriptional activator protein
1032	 53.74	-1	1163620..1163766	-	48	117619583	-	AHA_1071	-	hypothetical protein
1033	 61.98	0	1164200..1165459	-	419	117620812	-	AHA_1072	-	protein UmuC
1034	 59.23	0	1165440..1165883	-	147	117621500	-	AHA_1073	-	protein UmuD
1035	 50.09	-2	1166357..1168504	+	715	117617605	-	AHA_1074	-	hypothetical protein
1036	 50.19	-2	1168501..1170042	+	513	117618170	-	AHA_1075	-	hypothetical protein
1037	 47.59	-2	1169945..1175374	+	1809	117620176	-	AHA_1076	-	hypothetical protein
1038	 40.06	-2	1175428..1176750	-	440	117620606	-	AHA_1077	-	modification methylase DdeI
1039	 48.94	-2	1178163..1180091	-	642	117617679	-	AHA_1078	-	hypothetical protein
1040	 58.38	0	1180233..1180763	-	176	117620845	-	AHA_1079	-	putative DNA repair protein RadC
1041	 57.98	0	1181510..1181935	-	141	117621319	-	AHA_1080	-	hypothetical protein
1042	 58.05	0	1181955..1182302	-	115	117617655	-	AHA_1081	-	hypothetical protein
1043	 55.78	-1	1182386..1182835	-	149	117618101	-	AHA_1082	-	hypothetical protein
1044	 52.78	-1	1182848..1183171	-	107	117619485	-	AHA_1083	-	hypothetical protein
1045	 58.97	0	1183418..1183768	+	116	117619251	-	AHA_1084	-	helix-turn-helix domain-containing protein
1046	 60.36	0	1183780..1184619	-	279	117621420	-	AHA_1085	-	hypothetical protein
1047	 60.91	0	1184757..1185746	-	329	117619943	-	AHA_1086	-	hypothetical protein
1048	 58.89	0	1185841..1186791	-	316	117618482	-	AHA_1087	-	hypothetical protein
1049	 64.33	0	1187154..1188308	-	384	117617955	-	AHA_1089	-	hypothetical protein
1050	 59.86	0	1188389..1189123	+	244	117617633	-	AHA_1090	-	hypothetical protein
1051	 62.50	0	1189139..1189570	+	143	117618769	-	AHA_1091	-	hypothetical protein
1052	 64.11	0	1189671..1190843	-	390	117618530	pheA	AHA_1092	-	chorismate mutase/prephenate dehydratase
1053	 45.83	-2	1190965..1191012	-	15	117618987	-	AHA_1093	-	Phe leader peptide
1054	 63.83	0	1191186..1191785	+	199	117620258	-	AHA_1094	-	hydrolase
1055	 53.05	-1	1191811..1192089	+	92	117619643	-	AHA_1095	-	hypothetical protein
1056	 63.46	0	1192135..1193007	+	290	117621478	-	AHA_1096	-	hypothetical protein
1057	 67.03	0	1193103..1193651	+	182	117620941	-	AHA_1097	-	hypothetical protein
1058	 59.21	0	1193836..1194465	+	209	117618324	-	AHA_1098	-	hypothetical protein
1059	 63.39	0	1194638..1195582	+	314	117617727	-	AHA_1099	-	hypothetical protein
1060	 69.03	+1	1195646..1196533	+	295	117620327	-	AHA_1100	-	MerR family transcriptional regulator
1061	 65.68	0	1196530..1197951	+	473	117618175	phrB	AHA_1101	-	deoxyribodipyrimidine photolyase
1062	 64.57	0	1197953..1198381	+	142	117617595	-	AHA_1102	-	putative transcriptional regulator
1063	 66.67	0	1198378..1199115	+	245	117621424	-	AHA_1103	-	short chain dehydrogenase/reductase family oxidoreductase
1064	 64.60	0	1199112..1200371	+	419	117620782	-	AHA_1104	-	amino-oxidase
1065	 64.37	0	1200368..1201150	+	260	117618378	-	AHA_1105	-	plasmid partition ParA protein
1066	 64.20	0	1201150..1202406	+	418	117620857	-	AHA_1106	-	cyclopropane-fatty-acyl-phospholipid synthase
1067	 56.16	-1	1202885..1203103	+	72	117619494	-	AHA_1107	-	hypothetical protein
1068	 66.67	0	1203120..1203611	+	163	117617951	-	AHA_1108	-	hypothetical protein
1069	 61.47	0	1203611..1204168	+	185	117620145	-	AHA_1109	-	putative lipoprotein
1070	 58.12	0	1204293..1204760	+	155	117618996	-	AHA_1110	-	DPS family protein
1071	 62.55	0	1205088..1206737	+	549	117618309	-	AHA_1111	-	hydroxylamine reductase
1072	 65.98	0	1206852..1207871	+	339	117617743	-	AHA_1112	-	iron-sulfur cluster-binding protein
1073	 62.18	0	1207957..1208982	+	341	117619556	galE-1	AHA_1113	-	UDP-glucose 4-epimerase
1074	 59.87	0	1209157..1209906	-	249	117621284	-	AHA_1114	-	outer membrane protein
62.23	MEAN

5.38	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the